These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 30 consensus length = 998 fasta sequence [TTTTTTTTTTTTTTTTTAATGTAATTATGTATCCAGGTATTAGTATGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA-CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT-CCTTGAGTT-CCAGCT-TGGATGCAT-CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT-T-TGTGTTATCCGAGTTAGTGTCA-GTTTGAGCCATGCTGCAGATAAA-TTGGGAGAGCA-GTGGAT-CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA-GGG-TGTAGGCCATG-AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC-TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGAGTGGAGTTTTTCTACTCCTTCA] [-] EMBL AU057067 [TTTTTTTTTTTTTTTTTAATGTAATTATGTATCCAGGTATTAGTATGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT TGTGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGANGGG TGTAGGCCATGAAGCTGCTGGGCCTAGAAGGTTTCCNTCT ] [+] EMBL CF294717 [ TTTTTTAATGTAATTATGTATCCAGGTATTANTATGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAAAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGGCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAAC ] [+] EMBL CB678911 [ TCCAGGTATTACTATGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAAAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAAATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAAAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAAATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCctcgtgccg ] [-] EMBL CB678910 [ TTAGTATGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGA ] [+] EMBL CF297103 [ ttttTGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGTGT TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGG ] [+] EMBL CF292917 [ tttttGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGTATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGC ] [+] EMBL CF296423 [ tttttTATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGCCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGAGGGG TGTAGGCCA ] [+] EMBL CF296319 [ ttTTCTCCTGCCAGATGTATATTAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTT ] [-] EMBL BI810523 [ ttttttTGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGGGACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAG GG T TGTGTTATCCGAGTTAGTGTCACGTTTGAGCCATGCTGCAGATAAACTTGGGAGAGCACGTGGAT CAGGTGCAGGATCTTGGTATGTC ] [-] EMBL BI809298 [ ttttttTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTCGCTAAGTAACACTAGACAACAAATTAAAGAA TGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCTGTGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTG TGAAACTG AATTTCAGTG T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA G GGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGA ] [-] EMBL AK069516 [ GGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGA ] [-] EMBL CA766210 [ CCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTT AACTCTGA ] [+] EMBL CF281474 [ ttttttttTATGCAAACATTCCTCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACATCTTTTTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTTTTTTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAG AGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCC ] [+] EMBL CF332743 [ tttttttttTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGGTTGTAGGCCATG A ] [+] EMBL CF293444 [ tttttTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCG GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGGATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATG ] [-] EMBL BQ529583 [ GAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCA ] [-] EMBL AU057066 [ TTGNCGACCATGA TATCNCCTTGACAANCTCGATCCTTTGCAACCTTTCCCTTGAGTTCCCAGCT NGGATGCATCCATCAGTCAGAGTCACCCGCTGACTCACCCTCTGATCATGTGAGACTGCTGAAACTGCAATTNCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGANCCATGCTGCAGATAAA TTGGGAGAGCA GTGGATCCAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAA ] [-] EMBL CF332744 [ T TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGGAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGAGTGGAGTTTTTCTACTC ] [-] EMBL CF293445 [ AGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCG GTNTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGGATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGAGTGGAGTTATTCTACTCCTTCA] [-] EMBL CF294718 [ GACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAGCAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTATACAAAAAGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGAAAAAAAACCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTACAATGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAAAAATTGAAACACAGAGTGAGT AAATTTTTCTACTCCTTCA] [-] EMBL CF281473 [ GTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGA ] [-] EMBL CF294916 [ GCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAGGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTG ] [-] EMBL CF311474 [ GCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCTGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGGT AACC T AACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGA ] [-] EMBL CF294671 [ TGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGCTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGGAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGAGTG TTTCTACTC ] [-] EMBL CF297104 [ GTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGAG ] [-] EMBL CF308859 [ caTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGA ] [-] EMBL CF296786 [ A GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGA ] [-] EMBL CF292918 [ CTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGA ] [-] EMBL CF296424 [ TGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCAAGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACCATGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGT AGAACAGCT ] [-] EMBL CF296318 [ CTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTATGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGGAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACA ] consensusID : consensus_16556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 390 fasta sequence [ACGATACGCTACGTAACGGCTGACATTTTTTTTTTTTTTTTTTTTATGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTAT-AGATTATATATCTGTGAGCCA-GGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGACATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTTCCTTGAGTTCCAGCTTGGATGCATCATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAAC] [+] EMBL CF294917 [ACGATACGCTACGTAACGGCTGACATTTTTTTTTTTTTTTTTTTTATGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTAT AGATTATATATCTGTGAGCCA GGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGACATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTTCCTTGAGTTCCAGCTTGGATGCATCATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAAC] [+] EMBL CF296785 [ TTTTTTAGTATGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATNAGATTATATATCTGTGAGCCA GGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAA ] [+] EMBL CF296021 [ CTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTAT AGATTATATATCTGTGAGCCATGTGGATGTTGCGCATACATGATTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGACATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTTCCTTGAGTTCCAGCTTGGATGCATCATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAAC] [+] EMBL CF311473 [ tttttTACTAGAATATTACATGGTAT AGATTATATATCTGTGAGCCA GGGGATGTTG ] [+] EMBL CF294672 [ CAACAAATTAAAGAATTGTCGACATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTTCCTTGAGTTCCAGCTTGGATGCATCATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAA ] consensusID : consensus_16556#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 47 fasta sequence [CTGACTGGACTGAAGGAGTAGAAAAACTCCACTCACTCTGTGTTTCA] [+] EMBL CF296020 [CTGACTGGACTGAAGGAGTAGAAAAACTCCACTCACTCTGTGTTTCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16556#0 -TTTTTTTTTTTTTTTTTAATGTAATTATGTATCCAGGTATTAGTATGGGATATGGCATA 59 consensus_16556#1 ACGATACGCTACGTAACGGCTGACATTTTTTTTTTTTTTTTTTTTATGGGATATGGCATA 60 consensus_16556#2 ------------------------------------------------------------ consensus_16556#0 TTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCAT 119 consensus_16556#1 TTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCAT 120 consensus_16556#2 ------------------------------------------------------------ consensus_16556#0 TCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGC 179 consensus_16556#1 TCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGC 180 consensus_16556#2 ------------------------------------------------------------ consensus_16556#0 ATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTA 239 consensus_16556#1 ATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTA 240 consensus_16556#2 ------------------------------------------------------------ consensus_16556#0 ACACTAGACAACAAATTAAAGAATTGTCGACATGATTATCTCCTTGACAAACTCGATTCT 299 consensus_16556#1 ACACTAGACAACAAATTAAAGAATTGTCGACATGATTATCTCCTTGACAAACTCGATTCT 300 consensus_16556#2 ------------------------------------------------------------ consensus_16556#0 TTGCAACCTTTCCTTGAGTTCCAGCTTGGATGCATCATCAGTCAGAGTCACACGCTGACT 359 consensus_16556#1 TTGCAACCTTTCCTTGAGTTCCAGCTTGGATGCATCATCAGTCAGAGTCACACGCTGACT 360 consensus_16556#2 --------------------CTGACTGGACTGAAGGAGTAGAAAAACTC---CACTCACT 37 * ** * ** * * ** * * ** * ** *** consensus_16556#0 CAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGTTTGTGTTATCCGAGTT 419 consensus_16556#1 CAACCTCTGATCATGTGAGACTGCTGAAAC------------------------------ 390 consensus_16556#2 CTGTGTTTCA-------------------------------------------------- 47 * * * * consensus_16556#0 AGTGTCAGTTTGAGCCATGCTGCAGATAAATTGGGAGAGCAGTGGATCAGGTGCAGGATC 479 consensus_16556#1 ------------------------------------------------------------ consensus_16556#2 ------------------------------------------------------------ consensus_16556#0 TTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATT 539 consensus_16556#1 ------------------------------------------------------------ consensus_16556#2 ------------------------------------------------------------ consensus_16556#0 GTTGGAGGGTGTAGGCCATGAGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATG 599 consensus_16556#1 ------------------------------------------------------------ consensus_16556#2 ------------------------------------------------------------ consensus_16556#0 TGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGG 659 consensus_16556#1 ------------------------------------------------------------ consensus_16556#2 ------------------------------------------------------------ consensus_16556#0 GCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGG 719 consensus_16556#1 ------------------------------------------------------------ consensus_16556#2 ------------------------------------------------------------ consensus_16556#0 CACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTC 779 consensus_16556#1 ------------------------------------------------------------ consensus_16556#2 ------------------------------------------------------------ consensus_16556#0 TGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATA 839 consensus_16556#1 ------------------------------------------------------------ consensus_16556#2 ------------------------------------------------------------ consensus_16556#0 GCTGTAGGAAGCCTCAACCTCCATGGCTGAACCTGAACTCCACTGCTTCCCTTCTCTGCT 899 consensus_16556#1 ------------------------------------------------------------ consensus_16556#2 ------------------------------------------------------------ consensus_16556#0 AACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCA 959 consensus_16556#1 ------------------------------------------------------------ consensus_16556#2 ------------------------------------------------------------ consensus_16556#0 AGTGAAACACAGAGTGAGTGGAGTTTTTCTACTCCTTCA 998 consensus_16556#1 --------------------------------------- consensus_16556#2 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||