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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 30 consensus length = 998 fasta sequence
[TTTTTTTTTTTTTTTTTAATGTAATTATGTATCCAGGTATTAGTATGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA-CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT-CCTTGAGTT-CCAGCT-TGGATGCAT-CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT-T-TGTGTTATCCGAGTTAGTGTCA-GTTTGAGCCATGCTGCAGATAAA-TTGGGAGAGCA-GTGGAT-CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA-GGG-TGTAGGCCATG-AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC-TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGAGTGGAGTTTTTCTACTCCTTCA]
[-] EMBL AU057067 [TTTTTTTTTTTTTTTTTAATGTAATTATGTATCCAGGTATTAGTATGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT TGTGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGANGGG TGTAGGCCATGAAGCTGCTGGGCCTAGAAGGTTTCCNTCT ]
[+] EMBL CF294717 [ TTTTTTAATGTAATTATGTATCCAGGTATTANTATGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAAAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGGCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAAC ]
[+] EMBL CB678911 [ TCCAGGTATTACTATGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAAAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAAATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAAAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAAATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCctcgtgccg ]
[-] EMBL CB678910 [ TTAGTATGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGA ]
[+] EMBL CF297103 [ ttttTGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGTGT TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGG ]
[+] EMBL CF292917 [ tttttGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGTATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGC ]
[+] EMBL CF296423 [ tttttTATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGCCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGAGGGG TGTAGGCCA ]
[+] EMBL CF296319 [ ttTTCTCCTGCCAGATGTATATTAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTT ]
[-] EMBL BI810523 [ ttttttTGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGGGACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAG GG T TGTGTTATCCGAGTTAGTGTCACGTTTGAGCCATGCTGCAGATAAACTTGGGAGAGCACGTGGAT CAGGTGCAGGATCTTGGTATGTC ]
[-] EMBL BI809298 [ ttttttTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTCGCTAAGTAACACTAGACAACAAATTAAAGAA TGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCTGTGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTG TGAAACTG AATTTCAGTG T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA G GGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGA ]
[-] EMBL AK069516 [ GGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGA ]
[-] EMBL CA766210 [ CCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTT AACTCTGA ]
[+] EMBL CF281474 [ ttttttttTATGCAAACATTCCTCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACATCTTTTTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTTTTTTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAG AGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCC ]
[+] EMBL CF332743 [ tttttttttTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGGTTGTAGGCCATG A ]
[+] EMBL CF293444 [ tttttTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCG GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGGATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATG ]
[-] EMBL BQ529583 [ GAATTGTCGA CATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTT CCTTGAGTT CCAGCT TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCA ]
[-] EMBL AU057066 [ TTGNCGACCATGA TATCNCCTTGACAANCTCGATCCTTTGCAACCTTTCCCTTGAGTTCCCAGCT NGGATGCATCCATCAGTCAGAGTCACCCGCTGACTCACCCTCTGATCATGTGAGACTGCTGAAACTGCAATTNCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGANCCATGCTGCAGATAAA TTGGGAGAGCA GTGGATCCAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAA ]
[-] EMBL CF332744 [ T TGGATGCAT CATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGGAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGAGTGGAGTTTTTCTACTC ]
[-] EMBL CF293445 [ AGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCG GTNTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGGATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGAGTGGAGTTATTCTACTCCTTCA]
[-] EMBL CF294718 [ GACTGCTGAAACTGCAATTTCAGTGT T TGTGTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAGCAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTATACAAAAAGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGAAAAAAAACCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTACAATGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAAAAATTGAAACACAGAGTGAGT AAATTTTTCTACTCCTTCA]
[-] EMBL CF281473 [ GTTATCCGAGTTAGTGTCA GTTTGAGCCATGCTGCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGA ]
[-] EMBL CF294916 [ GCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAGGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTG ]
[-] EMBL CF311474 [ GCAGATAAA TTGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCTGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGGT AACC T AACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGA ]
[-] EMBL CF294671 [ TGGGAGAGCA GTGGAT CAGGTGCAGGATCTTGGTATGTCCTGTTGCTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGGAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGAGTG TTTCTACTC ]
[-] EMBL CF297104 [ GTGCAGGATCTTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGAG ]
[-] EMBL CF308859 [ caTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATTGTTGGA GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGA ]
[-] EMBL CF296786 [ A GGG TGTAGGCCATG AGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGA ]
[-] EMBL CF292918 [ CTTCTCTTGAGAAGATGTGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACAGAGTGA ]
[-] EMBL CF296424 [ TGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCAAGAAGGAAGGAAGCCATAGCTGTAGGAAGCCTCAACCTCCATGGCTGAACCATGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGT AGAACAGCT ]
[-] EMBL CF296318 [ CTCTCCCTATATTGTCGGCGCACAACGGGCACACAGCATTTATGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGGCACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTCTGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATAGCTGTAGGGAGCCTCAACCTCCATGGCTGAACC TGAACTCCACTGCTTCCCTTCTCTGCTAACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCAAGTGAAACACA ]
consensusID : consensus_16556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 390 fasta sequence
[ACGATACGCTACGTAACGGCTGACATTTTTTTTTTTTTTTTTTTTATGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTAT-AGATTATATATCTGTGAGCCA-GGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGACATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTTCCTTGAGTTCCAGCTTGGATGCATCATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAAC]
[+] EMBL CF294917 [ACGATACGCTACGTAACGGCTGACATTTTTTTTTTTTTTTTTTTTATGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTAT AGATTATATATCTGTGAGCCA GGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGACATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTTCCTTGAGTTCCAGCTTGGATGCATCATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAAC]
[+] EMBL CF296785 [ TTTTTTAGTATGGGATATGGCATATTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTATNAGATTATATATCTGTGAGCCA GGGGATGTTGCGCATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAA ]
[+] EMBL CF296021 [ CTTGGAGCCAAAGTATGCAAGCATTCATCTACTAGAATATTACATGGTAT AGATTATATATCTGTGAGCCATGTGGATGTTGCGCATACATGATTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTAACACTAGACAACAAATTAAAGAATTGTCGACATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTTCCTTGAGTTCCAGCTTGGATGCATCATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAAAC]
[+] EMBL CF311473 [ tttttTACTAGAATATTACATGGTAT AGATTATATATCTGTGAGCCA GGGGATGTTG ]
[+] EMBL CF294672 [ CAACAAATTAAAGAATTGTCGACATGATTATCTCCTTGACAAACTCGATTCTTTGCAACCTTTCCTTGAGTTCCAGCTTGGATGCATCATCAGTCAGAGTCACACGCTGACTCAACCTCTGATCATGTGAGACTGCTGAA ]
consensusID : consensus_16556#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 47 fasta sequence
[CTGACTGGACTGAAGGAGTAGAAAAACTCCACTCACTCTGTGTTTCA]
[+] EMBL CF296020 [CTGACTGGACTGAAGGAGTAGAAAAACTCCACTCACTCTGTGTTTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16556#0 -TTTTTTTTTTTTTTTTTAATGTAATTATGTATCCAGGTATTAGTATGGGATATGGCATA 59
consensus_16556#1 ACGATACGCTACGTAACGGCTGACATTTTTTTTTTTTTTTTTTTTATGGGATATGGCATA 60
consensus_16556#2 ------------------------------------------------------------
consensus_16556#0 TTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCAT 119
consensus_16556#1 TTCTCCTGCCAGATGTATAATAATTCATATGACAAACTTGGAGCCAAAGTATGCAAGCAT 120
consensus_16556#2 ------------------------------------------------------------
consensus_16556#0 TCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGC 179
consensus_16556#1 TCATCTACTAGAATATTACATGGTATAGATTATATATCTGTGAGCCAGGGGATGTTGCGC 180
consensus_16556#2 ------------------------------------------------------------
consensus_16556#0 ATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTA 239
consensus_16556#1 ATACATGACTGATACATCTGCGCTCACAAAACACAAAACATAAATAAAACTTGCTAAGTA 240
consensus_16556#2 ------------------------------------------------------------
consensus_16556#0 ACACTAGACAACAAATTAAAGAATTGTCGACATGATTATCTCCTTGACAAACTCGATTCT 299
consensus_16556#1 ACACTAGACAACAAATTAAAGAATTGTCGACATGATTATCTCCTTGACAAACTCGATTCT 300
consensus_16556#2 ------------------------------------------------------------
consensus_16556#0 TTGCAACCTTTCCTTGAGTTCCAGCTTGGATGCATCATCAGTCAGAGTCACACGCTGACT 359
consensus_16556#1 TTGCAACCTTTCCTTGAGTTCCAGCTTGGATGCATCATCAGTCAGAGTCACACGCTGACT 360
consensus_16556#2 --------------------CTGACTGGACTGAAGGAGTAGAAAAACTC---CACTCACT 37
* ** * ** * * ** * * ** * ** ***
consensus_16556#0 CAACCTCTGATCATGTGAGACTGCTGAAACTGCAATTTCAGTGTTTGTGTTATCCGAGTT 419
consensus_16556#1 CAACCTCTGATCATGTGAGACTGCTGAAAC------------------------------ 390
consensus_16556#2 CTGTGTTTCA-------------------------------------------------- 47
* * * *
consensus_16556#0 AGTGTCAGTTTGAGCCATGCTGCAGATAAATTGGGAGAGCAGTGGATCAGGTGCAGGATC 479
consensus_16556#1 ------------------------------------------------------------
consensus_16556#2 ------------------------------------------------------------
consensus_16556#0 TTGGTATGTCCTGTTGTTCATCATATACTGTGGAGGCCCCTCAAAGTAGGGGTCTGAATT 539
consensus_16556#1 ------------------------------------------------------------
consensus_16556#2 ------------------------------------------------------------
consensus_16556#0 GTTGGAGGGTGTAGGCCATGAGCTGCTGGGCCTAGAAGGTTTCCTTCTCTTGAGAAGATG 599
consensus_16556#1 ------------------------------------------------------------
consensus_16556#2 ------------------------------------------------------------
consensus_16556#0 TGAGTGTTGAACTCTGAAATGGGCACCCATGTCTCTCCCTATATTGTCGGCGCACAACGG 659
consensus_16556#1 ------------------------------------------------------------
consensus_16556#2 ------------------------------------------------------------
consensus_16556#0 GCACACAGCATTTCTGGTGTCAAAGCAATGCTCTTCCTGAAGATGGTTGCAGATGAAGGG 719
consensus_16556#1 ------------------------------------------------------------
consensus_16556#2 ------------------------------------------------------------
consensus_16556#0 CACCTCAACCTCGATGTAACAGAAAGGGCATGGAAAGTACTCCCACAATTCGCCTTCCTC 779
consensus_16556#1 ------------------------------------------------------------
consensus_16556#2 ------------------------------------------------------------
consensus_16556#0 TGCAGGGTGGGGAGGAGGTGGTGCATAAGGCTGGTGCCTGCCTGAAGGAAGGAAGCCATA 839
consensus_16556#1 ------------------------------------------------------------
consensus_16556#2 ------------------------------------------------------------
consensus_16556#0 GCTGTAGGAAGCCTCAACCTCCATGGCTGAACCTGAACTCCACTGCTTCCCTTCTCTGCT 899
consensus_16556#1 ------------------------------------------------------------
consensus_16556#2 ------------------------------------------------------------
consensus_16556#0 AACCACTCTAGCTACAAGGCAGGTGTGAGAACAGCTATGCTTTGCAACTGAAAGGCAGCA 959
consensus_16556#1 ------------------------------------------------------------
consensus_16556#2 ------------------------------------------------------------
consensus_16556#0 AGTGAAACACAGAGTGAGTGGAGTTTTTCTACTCCTTCA 998
consensus_16556#1 ---------------------------------------
consensus_16556#2 ---------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||