cluster # 1663

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Oryza sativa
cluster # 1663 cluster # 1663 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1663#0 length = 169 sequences # 1

consensus_1663#1 length = 164 sequences # 1

consensusID : consensus_1663#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 169
fasta sequence

                              [CAGCACCCCGGCGGGAAGGTGGAGCGGCTCTACTGGCCCACCACCGCCGCCGACGTCATGCGGGCCAACCCCGGCCACTACGTCGCCCTCGTCATCCTCCGCATCTCCGCCGACAAGGCCGCCTCCGCCGCCGNCGNGGGGGACAACAAGACCAACGCCGGNGGAGCCA]

[+] EMBL AU222630             [CAGCACCCCGGCGGGAAGGTGGAGCGGCTCTACTGGCCCACCACCGCCGCCGACGTCATGCGGGCCAACCCCGGCCACTACGTCGCCCTCGTCATCCTCCGCATCTCCGCCGACAAGGCCGCCTCCGCCGCCGNCGNGGGGGACAACAAGACCAACGCCGGNGGAGCCA]




>consensus_1663#0
CAGCACCCCGGCGGGAAGGTGGAGCGGCTCTACTGGCCCACCACCGCCGCCGACGTCATG
CGGGCCAACCCCGGCCACTACGTCGCCCTCGTCATCCTCCGCATCTCCGCCGACAAGGCC
GCCTCCGCCGCCGNCGNGGGGGACAACAAGACCAACGCCGGNGGAGCCA

consensusID : consensus_1663#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 164
fasta sequence

                              [CCCAAGAACTCGCAATNGCCACNGNCGCCGCGGCGNGNTAGCTNNNATACCGGCGGNGCGAGAGGAAGGCGGAGGAGGGAGAGAGAAATGGGCAACTGCCAGGNGNNGGANGNGGCGGCGGTCGTCATCCAGCACCCCGGNGGGAAGGTGGAGCGGCTCTACTT]

[+] EMBL OSS10525A            [CCCAAGAACTCGCAATNGCCACNGNCGCCGCGGCGNGNTAGCTNNNATACCGGCGGNGCGAGAGGAAGGCGGAGGAGGGAGAGAGAAATGGGCAACTGCCAGGNGNNGGANGNGGCGGCGGTCGTCATCCAGCACCCCGGNGGGAAGGTGGAGCGGCTCTACTT]




>consensus_1663#1
CCCAAGAACTCGCAATNGCCACNGNCGCCGCGGCGNGNTAGCTNNNATACCGGCGGNGCG
AGAGGAAGGCGGAGGAGGGAGAGAGAAATGGGCAACTGCCAGGNGNNGGANGNGGCGGCG
GTCGTCATCCAGCACCCCGGNGGGAAGGTGGAGCGGCTCTACTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1663#0      --CAGCACCCCGGCGGGAAGGTGGAGCGGCTCTACTGGCCCACCACCGCCGCCGACGTCA 58
consensus_1663#1      CCCAAGAACTCG--CAATNGCCACNGNCGCCGCGGCGNGNTAGCTNNNATACCGGCGGNG 58
                        **  * * **       *     *  **      *    * *       *** **   

consensus_1663#0      TGCGGGCCAACCCCGGCCACTACGTCGCCCTCGTCATCCTCCGCATCTCCGCCGACAAGG 118
consensus_1663#1      CGAGAGGAAGGCGGAGGAGGGAGAGAGAAATGGGCAACTGCCAGGNGNNGGANGNGGCGG 118
                       * * *  *  *   *     *    *   * * ** *  **        *  *    **

consensus_1663#0      CCGCCTCCG-CCGCCGNCGNGGGGGACAACAAGACCAACGCCGGNGGAGCCA 169
consensus_1663#1      CGGTCGTCATCCAGCACCCCGGNGGGAAGGTGGAGCGGCTCTACTT------ 164
                      * * *  *  **  *  *  ** **  *    ** *  * *