These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 33 consensus length = 534 fasta sequence [AAACTGCCTGGAAGGAAGAACCAATCCAAGAAGAAGCGATGGCATCTCGT-CTCGTTGCGGC-GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT-CCCGCCG-TGGCCTCGCCGGCGC-TGCAGAT-CA-CCATGGGCCTCCGAAGGTCAACA-TTTGGCAAGA-ACCGAT-GAACCCGGCTAAC-TGG-AAGGA-AGAGCAATTT-GTGCTAGCCAGCTTAGCTAT-GTGGGGAGGTATTTTTT-ATGGT-GTCGGCAGGCTTTTTAGTGGGAA-GA-AGGAAGAC-AAAACTACTGA-GGCGGCGCCA-GCA-C-AGGCATA-ATAGGATTT-ACCAG-AGCCTTATTTCATGCTGCAGACGTGCAAC-TGTATGAAATAAAGAAGAATTTTATGGTC-TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG-ATGGGTGATTTT-GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGCAAAAAAAAAAA] [+] EMBL AK059201 [AAACTGCCTGGAAGGAAGAACCAATCCAAGAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAAC ] [+] EMBL CA758895 [ AGAACCAATCCAAGAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ] [+] EMBL OSC28131 [ ccgGAACCAATCCAAGAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGNCGGNGC TGCAGAT CA CCATGGGCCTCCGAA GTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGACCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGNCA NA C AGGCATA ATAGGATTT ACCAN AGCCTTATTTCATG ] [+] EMBL AU091337 [ AACCAATCCAAGAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAA AAAAAAAAA ] [+] EMBL C74191 [ ACCAATCCAAGAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTNCGAA GTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCNATTT GTGCTAACCAGCCTAGCTAT GTTGGGAGGTA TTTTT ATGGT GTCGGCANGCTTTTTAGTGGGAA GA AGGAAGAC AAACTACTGA AGC ] [+] EMBL OS1637A [ AATCCAAGAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCG CA GCA CAAGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC T ] [+] EMBL OSC08161 [ AATCCAAGAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C Aag ] [+] EMBL C29024 [ CAAGAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAA GTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTN ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA NA C AGGCATA ATAGGATTT ACCAG AGCCTTAT ] [-] EMBL BU673449 [ CAAGAAGTAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGCA ] [+] EMBL BI795583 [ ggCAAGAATA CGATGGCATCTC T CTCCTTTC GC GC GCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCC CCG TGGCCTCGCCGGCGC T CAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGC ATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGTTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCCGTGGAACTTTGGTTGAGAAA AAAAAA ] [-] EMBL CB967259 [ GAAGTAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCCATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTTTTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGCA ] [+] EMBL AU031613 [ GAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAA GTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ] [+] EMBL CF291141 [ AAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC CGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTA ] [+] EMBL AK121839 [ AAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GGACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGGTTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ] [+] EMBL C26987 [ GAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTNTTCCCCGCTCGCCCGCNTCGTNT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGTCTCCGAA GTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT NTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTN ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA CACC AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTG ] [+] EMBL C26952 [ GCGATGGCATCTCGT CTCGTTNCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCNAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTA ATGGT GTCGGCAGGCTTTTNAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA NA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAACTTGTATGna ] [+] EMBL CB627438 [ GATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGTTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ] [+] EMBL BI797262 [ CGTGCTCGTTGCAGCAGGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCACCG T GCCTCGCC GCGC TGCAGAT CACCCATGGGCCTCCGAAGCTCAACACTTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGA CCATTT GTGCTAACCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT TCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC CAACTTACTGA GCGGCGCCA GCA C AGGCATACATAGCATTT ACCCG ACCCTTACCCCATCCTCCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGTTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATCACCCCT CC CAGTGGAACTTTGGTTGAGAAAaaa ] [+] EMBL AU065883 [ T CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGATAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT NTGGGGAGGTATTTTTN ATGGT GTCGGCAGGNTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGNCA GAN C AGGCATA ATAGGATTT ANCAG AGCCTTATTT ] [+] EMBL OSS15459A [ T CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGNTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAAGGA AGGAAGAC AAAACTACTGAGGGCGGCGGCANACA AGGCATA ATAGGATTT ACCAG AGCC ] [+] EMBL AU165718 [ TCGTTGCGGC GNCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ] [+] EMBL C73473 [ CGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTCTTGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAGAATGGGTGATTTTNGTAAGAGGCGAGATTTTGT ] [+] EMBL AU031614 [ CCTCCTCGTCTCCCCCGCTCGCCCGCCTCGTCTCCCCCCCG TGCCCTCGCC GCGC TGCAGAT CA CCATGGCCCTCCGAAGGTCAACA TTTGGCAAGANCCCGATGGACCCCGGCTAAC TGG AAGGA AGNGCAATTT GTGCTANCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GNCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ] [-] EMBL CB965409 [ TCGTCTTCCCCGCTCGCCCGCTTCGTCT CCCGCTGTTGTCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGCA ] [+] EMBL AU165267 [ CGTCT CCCGCCG TGGCCTCGCCGGCGC TNCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ] [+] EMBL AU092424 [ gnCCTCGCCGGCGCTTGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ] [+] EMBL CB000791 [ AGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ] [+] EMBL CB000938 [ AGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ] [+] EMBL C98154 [ ncaAGATCCA CCATGGGCCTCCGAAGGTCAACA TTTGNCAAGA ACCGAT GAACCCGGCTACC TGGAAAGGANAGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGNAGGTATTTTTTAATGGT GTCGGNAGGCTTTTTAGTGGGAA GACAGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCNGTGGAACTTTGGTTGAGAAA AAAAAAAAAAA] [+] EMBL AU182108 [ ACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ] [+] EMBL AU096758 [ TTGGCAAGA ACCGAT GAACCCGGCTAACTTGG AAGGA AGAGCAATTTNGTGCTAGCCAGCTTAGCTATNGTGGGGAGGTATTTTTT ATGGTAGTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGACNAAAACTACTGA GCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ] [-] EMBL BU673100 [ GGTTTTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC CAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTTAACCAGNAGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGCA ] [-] EMBL CB967053 [ GGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGCA ] consensusID : consensus_16636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 395 fasta sequence [TGCCCATTAAATGGGCCTCCGAAGGTCAACATTTGGCAAGAACCGATTTTCCCGGCTAACTGGAAGGAAGAGCAATTTGTGCTAGCCAGCTTAGCTATGTGGGGAGGTATTTTTTATGGTGTCGGCAGGCTTTTTAGTGGGAAGAAGGAAGACAAAACTA-CTGAGGCGGCGCCAGCACAGGCATAATAGGATTTACCAGAGCCTTATTTCATGCTGCAGACGTGCAACTGTATGAAATAAAGAAGAATTTTATGGTCTGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAGATGGGTGATTTTGTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC] [+] EMBL CB000066 [TGCCCATTAAATGGGCCTCCGAAGGTCAACATTTGGCAAGAACCGATTTTCCCGGCTAACTGGAAGGAAGAGCAATTTGTGCTAGCCAGCTTAGCTATGTGGGGAGGTATTTTTTATGGTGTCGGCAGGCTTTTTAGTGGGAAGAAGGAAGACAAAACTA CTGAGGCGGCGCCAGCACAGGCATAATAGGATTTACCAGAGCCTTATTTCATGCTGCAGACGTGCAACTGTATGAAATAAAGAAGAATTTTATGGTCTGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAGATGGGTGATTTTGTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC] [+] EMBL BI795442 [ ccGCTAACTGGAAGGAAGACCAATTTGTGCTAGCCAGCTTA CTATGTGGGGAGGTATTTTTTATGGTGTCGGCAGGCTTTTTAGTGGGAAGAAGGAAGACCAAACTATCTGA GCGGCGCCAGCACAGGCATAATAGGATTTACCCGAGCCTTATTTCATGCTGCAGACGTGCAACTGTATGAAATAAAGAAGAATTTTATGGTCTGTTTTAAGTTTGTATCGCTAATGTTAAATTGTGGCGACTAGATGGGTGATTTTGTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTG ] [+] EMBL CB679667 [ GCATAATAGGATTTACCAGAGCCTTATTTCATGCTGCAGACGTGCAACTGTATGAAATAAAGAAGAATTTTATGGTCTGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAGATGGGTGATTTTGTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC] [+] EMBL CB680094 [ GCATAATCTTATTTACCAGAGCCTTATTTCATGCTGCAGACGTGCAACTGTATGAAATAAAGAAGAATTTTATGGTCTGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAGATGGGTGATTTTGTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC] [+] EMBL D42665 [ GTATGAAATNAAGAAGAATTTNATGGTCTGTTTTAAGTTTGNATCGCTAATGGTAAATTGTGGCGACTAGATGGGTGATTTTGTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_16636#0 AAACTGCCTGGAAGGAAGAACCAATCCAAGAAGAAGCGATGGCATCTCGTCTCGTTGCGG 60 consensus_16636#1 ------------------------------------------------------------ consensus_16636#0 CGGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCTCCCGCCGTGGCCTCG 120 consensus_16636#1 ------------------------------------------------------------ consensus_16636#0 CCGGCGCTGCAGATCACCATGGGCCTCCGAAGGTCAACATTTGGCAAGAACCGATGAACC 180 consensus_16636#1 -------TGCCCATTAA-ATGGGCCTCCGAAGGTCAACATTTGGCAAGAACCGATTTTCC 52 *** ** * ************************************* ** consensus_16636#0 CGGCTAACTGGAAGGAAGAGCAATTTGTGCTAGCCAGCTTAGCTATGTGGGGAGGTATTT 240 consensus_16636#1 CGGCTAACTGGAAGGAAGAGCAATTTGTGCTAGCCAGCTTAGCTATGTGGGGAGGTATTT 112 ************************************************************ consensus_16636#0 TTTATGGTGTCGGCAGGCTTTTTAGTGGGAAGAAGGAAGACAAAACTACTGAGGCGGCGC 300 consensus_16636#1 TTTATGGTGTCGGCAGGCTTTTTAGTGGGAAGAAGGAAGACAAAACTACTGAGGCGGCGC 172 ************************************************************ consensus_16636#0 CAGCACAGGCATAATAGGATTTACCAGAGCCTTATTTCATGCTGCAGACGTGCAACTGTA 360 consensus_16636#1 CAGCACAGGCATAATAGGATTTACCAGAGCCTTATTTCATGCTGCAGACGTGCAACTGTA 232 ************************************************************ consensus_16636#0 TGAAATAAAGAAGAATTTTATGGTCTGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGG 420 consensus_16636#1 TGAAATAAAGAAGAATTTTATGGTCTGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGG 292 ************************************************************ consensus_16636#0 CGACTAGATGGGTGATTTTGTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGC 480 consensus_16636#1 CGACTAGATGGGTGATTTTGTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGC 352 ************************************************************ consensus_16636#0 ATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGCAAAAAAAAAAA 534 consensus_16636#1 ATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC----------- 395 ******************************************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||