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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_16636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 33 consensus length = 534 fasta sequence
[AAACTGCCTGGAAGGAAGAACCAATCCAAGAAGAAGCGATGGCATCTCGT-CTCGTTGCGGC-GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT-CCCGCCG-TGGCCTCGCCGGCGC-TGCAGAT-CA-CCATGGGCCTCCGAAGGTCAACA-TTTGGCAAGA-ACCGAT-GAACCCGGCTAAC-TGG-AAGGA-AGAGCAATTT-GTGCTAGCCAGCTTAGCTAT-GTGGGGAGGTATTTTTT-ATGGT-GTCGGCAGGCTTTTTAGTGGGAA-GA-AGGAAGAC-AAAACTACTGA-GGCGGCGCCA-GCA-C-AGGCATA-ATAGGATTT-ACCAG-AGCCTTATTTCATGCTGCAGACGTGCAAC-TGTATGAAATAAAGAAGAATTTTATGGTC-TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG-ATGGGTGATTTT-GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGCAAAAAAAAAAA]
[+] EMBL AK059201 [AAACTGCCTGGAAGGAAGAACCAATCCAAGAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAAC ]
[+] EMBL CA758895 [ AGAACCAATCCAAGAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ]
[+] EMBL OSC28131 [ ccgGAACCAATCCAAGAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGNCGGNGC TGCAGAT CA CCATGGGCCTCCGAA GTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGACCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGNCA NA C AGGCATA ATAGGATTT ACCAN AGCCTTATTTCATG ]
[+] EMBL AU091337 [ AACCAATCCAAGAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAA AAAAAAAAA ]
[+] EMBL C74191 [ ACCAATCCAAGAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTNCGAA GTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCNATTT GTGCTAACCAGCCTAGCTAT GTTGGGAGGTA TTTTT ATGGT GTCGGCANGCTTTTTAGTGGGAA GA AGGAAGAC AAACTACTGA AGC ]
[+] EMBL OS1637A [ AATCCAAGAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCG CA GCA CAAGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC T ]
[+] EMBL OSC08161 [ AATCCAAGAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C Aag ]
[+] EMBL C29024 [ CAAGAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAA GTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTN ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA NA C AGGCATA ATAGGATTT ACCAG AGCCTTAT ]
[-] EMBL BU673449 [ CAAGAAGTAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGCA ]
[+] EMBL BI795583 [ ggCAAGAATA CGATGGCATCTC T CTCCTTTC GC GC GCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCC CCG TGGCCTCGCCGGCGC T CAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGC ATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGTTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCCGTGGAACTTTGGTTGAGAAA AAAAAA ]
[-] EMBL CB967259 [ GAAGTAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCCATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTTTTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGCA ]
[+] EMBL AU031613 [ GAAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAA GTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ]
[+] EMBL CF291141 [ AAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC CGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTA ]
[+] EMBL AK121839 [ AAGAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GGACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGGTTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ]
[+] EMBL C26987 [ GAAGCGATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTNTTCCCCGCTCGCCCGCNTCGTNT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGTCTCCGAA GTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT NTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTN ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA CACC AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTG ]
[+] EMBL C26952 [ GCGATGGCATCTCGT CTCGTTNCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCNAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTA ATGGT GTCGGCAGGCTTTTNAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA NA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAACTTGTATGna ]
[+] EMBL CB627438 [ GATGGCATCTCGT CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGTTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ]
[+] EMBL BI797262 [ CGTGCTCGTTGCAGCAGGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCACCG T GCCTCGCC GCGC TGCAGAT CACCCATGGGCCTCCGAAGCTCAACACTTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGA CCATTT GTGCTAACCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT TCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC CAACTTACTGA GCGGCGCCA GCA C AGGCATACATAGCATTT ACCCG ACCCTTACCCCATCCTCCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGTTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATCACCCCT CC CAGTGGAACTTTGGTTGAGAAAaaa ]
[+] EMBL AU065883 [ T CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGATAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT NTGGGGAGGTATTTTTN ATGGT GTCGGCAGGNTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGNCA GAN C AGGCATA ATAGGATTT ANCAG AGCCTTATTT ]
[+] EMBL OSS15459A [ T CTCGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGNTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAAGGA AGGAAGAC AAAACTACTGAGGGCGGCGGCANACA AGGCATA ATAGGATTT ACCAG AGCC ]
[+] EMBL AU165718 [ TCGTTGCGGC GNCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ]
[+] EMBL C73473 [ CGTTGCGGC GGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCT CCCGCCG TGGCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTCTTGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAGAATGGGTGATTTTNGTAAGAGGCGAGATTTTGT ]
[+] EMBL AU031614 [ CCTCCTCGTCTCCCCCGCTCGCCCGCCTCGTCTCCCCCCCG TGCCCTCGCC GCGC TGCAGAT CA CCATGGCCCTCCGAAGGTCAACA TTTGGCAAGANCCCGATGGACCCCGGCTAAC TGG AAGGA AGNGCAATTT GTGCTANCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GNCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ]
[-] EMBL CB965409 [ TCGTCTTCCCCGCTCGCCCGCTTCGTCT CCCGCTGTTGTCCTCGCCGGCGC TGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGCA ]
[+] EMBL AU165267 [ CGTCT CCCGCCG TGGCCTCGCCGGCGC TNCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ]
[+] EMBL AU092424 [ gnCCTCGCCGGCGCTTGCAGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ]
[+] EMBL CB000791 [ AGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ]
[+] EMBL CB000938 [ AGAT CA CCATGGGCCTCCGAAGGTCAACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ]
[+] EMBL C98154 [ ncaAGATCCA CCATGGGCCTCCGAAGGTCAACA TTTGNCAAGA ACCGAT GAACCCGGCTACC TGGAAAGGANAGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGNAGGTATTTTTTAATGGT GTCGGNAGGCTTTTTAGTGGGAA GACAGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCNGTGGAACTTTGGTTGAGAAA AAAAAAAAAAA]
[+] EMBL AU182108 [ ACA TTTGGCAAGA ACCGAT GAACCCGGCTAAC TGG AAGGA AGAGCAATTT GTGCTAGCCAGCTTAGCTAT GTGGGGAGGTATTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ]
[+] EMBL AU096758 [ TTGGCAAGA ACCGAT GAACCCGGCTAACTTGG AAGGA AGAGCAATTTNGTGCTAGCCAGCTTAGCTATNGTGGGGAGGTATTTTTT ATGGTAGTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGACNAAAACTACTGA GCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC ]
[-] EMBL BU673100 [ GGTTTTTTTT ATGGT GTCGGCAGGCTTTTTAGTGGGAA GA AGGAAGAC CAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTTAACCAGNAGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGCA ]
[-] EMBL CB967053 [ GGCTTTTTAGTGGGAA GA AGGAAGAC AAAACTACTGA GGCGGCGCCA GCA C AGGCATA ATAGGATTT ACCAG AGCCTTATTTCATGCTGCAGACGTGCAAC TGTATGAAATAAAGAAGAATTTTATGGTC TGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAG ATGGGTGATTTT GTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGCA ]
consensusID : consensus_16636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 395 fasta sequence
[TGCCCATTAAATGGGCCTCCGAAGGTCAACATTTGGCAAGAACCGATTTTCCCGGCTAACTGGAAGGAAGAGCAATTTGTGCTAGCCAGCTTAGCTATGTGGGGAGGTATTTTTTATGGTGTCGGCAGGCTTTTTAGTGGGAAGAAGGAAGACAAAACTA-CTGAGGCGGCGCCAGCACAGGCATAATAGGATTTACCAGAGCCTTATTTCATGCTGCAGACGTGCAACTGTATGAAATAAAGAAGAATTTTATGGTCTGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAGATGGGTGATTTTGTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC]
[+] EMBL CB000066 [TGCCCATTAAATGGGCCTCCGAAGGTCAACATTTGGCAAGAACCGATTTTCCCGGCTAACTGGAAGGAAGAGCAATTTGTGCTAGCCAGCTTAGCTATGTGGGGAGGTATTTTTTATGGTGTCGGCAGGCTTTTTAGTGGGAAGAAGGAAGACAAAACTA CTGAGGCGGCGCCAGCACAGGCATAATAGGATTTACCAGAGCCTTATTTCATGCTGCAGACGTGCAACTGTATGAAATAAAGAAGAATTTTATGGTCTGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAGATGGGTGATTTTGTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC]
[+] EMBL BI795442 [ ccGCTAACTGGAAGGAAGACCAATTTGTGCTAGCCAGCTTA CTATGTGGGGAGGTATTTTTTATGGTGTCGGCAGGCTTTTTAGTGGGAAGAAGGAAGACCAAACTATCTGA GCGGCGCCAGCACAGGCATAATAGGATTTACCCGAGCCTTATTTCATGCTGCAGACGTGCAACTGTATGAAATAAAGAAGAATTTTATGGTCTGTTTTAAGTTTGTATCGCTAATGTTAAATTGTGGCGACTAGATGGGTGATTTTGTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTG ]
[+] EMBL CB679667 [ GCATAATAGGATTTACCAGAGCCTTATTTCATGCTGCAGACGTGCAACTGTATGAAATAAAGAAGAATTTTATGGTCTGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAGATGGGTGATTTTGTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC]
[+] EMBL CB680094 [ GCATAATCTTATTTACCAGAGCCTTATTTCATGCTGCAGACGTGCAACTGTATGAAATAAAGAAGAATTTTATGGTCTGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGGCGACTAGATGGGTGATTTTGTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC]
[+] EMBL D42665 [ GTATGAAATNAAGAAGAATTTNATGGTCTGTTTTAAGTTTGNATCGCTAATGGTAAATTGTGGCGACTAGATGGGTGATTTTGTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGCATGAATAATCTTTACCGCAGTGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_16636#0 AAACTGCCTGGAAGGAAGAACCAATCCAAGAAGAAGCGATGGCATCTCGTCTCGTTGCGG 60
consensus_16636#1 ------------------------------------------------------------
consensus_16636#0 CGGCGGCGGCGTCCTCCTCGTCTTCCCCGCTCGCCCGCCTCGTCTCCCGCCGTGGCCTCG 120
consensus_16636#1 ------------------------------------------------------------
consensus_16636#0 CCGGCGCTGCAGATCACCATGGGCCTCCGAAGGTCAACATTTGGCAAGAACCGATGAACC 180
consensus_16636#1 -------TGCCCATTAA-ATGGGCCTCCGAAGGTCAACATTTGGCAAGAACCGATTTTCC 52
*** ** * ************************************* **
consensus_16636#0 CGGCTAACTGGAAGGAAGAGCAATTTGTGCTAGCCAGCTTAGCTATGTGGGGAGGTATTT 240
consensus_16636#1 CGGCTAACTGGAAGGAAGAGCAATTTGTGCTAGCCAGCTTAGCTATGTGGGGAGGTATTT 112
************************************************************
consensus_16636#0 TTTATGGTGTCGGCAGGCTTTTTAGTGGGAAGAAGGAAGACAAAACTACTGAGGCGGCGC 300
consensus_16636#1 TTTATGGTGTCGGCAGGCTTTTTAGTGGGAAGAAGGAAGACAAAACTACTGAGGCGGCGC 172
************************************************************
consensus_16636#0 CAGCACAGGCATAATAGGATTTACCAGAGCCTTATTTCATGCTGCAGACGTGCAACTGTA 360
consensus_16636#1 CAGCACAGGCATAATAGGATTTACCAGAGCCTTATTTCATGCTGCAGACGTGCAACTGTA 232
************************************************************
consensus_16636#0 TGAAATAAAGAAGAATTTTATGGTCTGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGG 420
consensus_16636#1 TGAAATAAAGAAGAATTTTATGGTCTGTTTTAAGTTTGTATCGCTAATGGTAAATTGTGG 292
************************************************************
consensus_16636#0 CGACTAGATGGGTGATTTTGTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGC 480
consensus_16636#1 CGACTAGATGGGTGATTTTGTAAGAGGCGAGATTTTGTGGACCTACACTTGTCAGCCAGC 352
************************************************************
consensus_16636#0 ATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGCAAAAAAAAAAA 534
consensus_16636#1 ATGAATAATCTTTACCGCAGTGGAACTTTGGTTGAGAAACTGC----------- 395
*******************************************
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||