These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1664#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 854 fasta sequence [GAGCCGGAGATGGGGGCGCAGCCTCAGCAGCAGTGGGAGGGCGCGGTGGAGGCGCGGCTGCCGTCGACACCGGCCGCCGCGGCGTGGCCGCACCTTGCCGCCTTCTGCTCGCTGCACCGCTACAACCCCGGCATCGACGTCTGCGAGCGCGTCGCCGGCGACGACGGCGTCCCCGGCTGCGTCCGCTACGTCGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGACGACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGGGAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGCAACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGACGTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGCCGCCGCAGGGTGCAAGCTCGTGTGGGCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGCTTGCTCGCCTACCTCGACGCCGCCGGCAAGGGCATGGCCGAGCGGATCGAGGCCGCCGCCGCCGCCGCCGTCACCGACATTGCCGTAGAAGACGACGCCGCCGCCGCTCGCAGCTAGAAGAATAAATCGAGTAAACTTTTAATTACTTTTCCTGCTTAATTAGCCTCTTCTAATGATTTGTTTGGTTCATCTAGATATCAAGTCACATTTTATTACTCTTTAATTCATCGTGTAAAAGTCTAAAAGAACATATATTAGAAGGTAGTGTTCGTTTGCTAGTCAATGTGTACGTGGACGATGGTGAAATATTTTTCCATATGTGAGACTTTTTA] [+] EMBL AK109150 [GAGCCGGAGATGGGGGCGCAGCCTCAGCAGCAGTGGGAGGGCGCGGTGGAGGCGCGGCTGCCGTCGACACCGGCCGCCGCGGCGTGGCCGCACCTTGCCGCCTTCTGCTCGCTGCACCGCTACAACCCCGGCATCGACGTCTGCGAGCGCGTCGCCGGCGACGACGGCGTCCCCGGCTGCGTCCGCTACGTCGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGACGACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGGGAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGCAACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGACGTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGCCGCCGCAGGGTGCAAGCTCGTGTGGGCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGCTTGCTCGCCTACCTCGACGCCGCCGGCAAGGGCATGGCCGAGCGGATCGAGGCCGCCGCCGCCGCCGCCGTCACCGACATTGCCGTAGAAGACGACGCCGCCGCCGCTCGCAGCTAGAAGAATAAATCGAGTAAACTTTTAATTACTTTTCCTGCTTAATTAGCCTCTTCTAATGATTTGTTTGGTTCATCTAGATATCAAGTCACATTTTATTACTCTTTAATTCATCGTGTAAAAGTCTAAAAGAACATATATTAGAAGGTAGTGTTCGTTTGCTAGTCAATGTGTACGTGGACGATGGTGAAATATTTTTCCATATGTGAGACTTTTTA] consensusID : consensus_1664#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 852 fasta sequence [CGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGACGACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGGGAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGCAACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGACGTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGNCGNCGCAGGGTCCAAGCTCGTGTGGGCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGTATGCTTGTTTTCCTTGACGACGTCGGTAAGGGTATGGTCGAGCGGATCGTGGCCGCCGTCGCCGTTGTCGTTTTTTTATTTGTTGCAAACACGACGTCGTCGTCGTTTCCCATTTTTTCCATTCCTTCAGTTATTTTCTTATTTCCTTTCTCTCCGCTACCTTACCTTTTTTTTCCTGATTTTTTTTTTCTCCCTTTTTCCCGCCTTTTTTTTTTTCCCTCACTCCTCCCTATTCATTTTCCGTAATTTTCCTTTTTTTTCATATCTCTTCCTAATGTTCTCTACCCATACCCCTTTTCTTTGCCCACATCGCCCTTTCGGTTCCCAGATTTACCCCCTTACATCATACGTTCTTCCTTTTCTTCGTTGAACTCTCAACTTCTTTTTCCCCTTGTTCTTTTTCACCCTCCACAAACACCTTTTACCTCTTTCTCCCCCTTTTTTTCTTTTTTCGCATCCCCCCCCCCTATCATCCCTTACGTTCCTTTTCCGCCTTATTCCCCCCCCTCTCTTTCCTCCCC] [+] EMBL CA757051 [CGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGACGACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGGGAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGCAACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGACGTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGNCGNCGCAGGGTCCAAGCTCGTGTGGGCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGTATGCTTGTTTTCCTTGACGACGTCGGTAAGGGTATGGTCGAGCGGATCGTGGCCGCCGTCGCCGTTGTCGTTTTTTTATTTGTTGCAAACACGACGTCGTCGTCGTTTCCCATTTTTTCCATTCCTTCAGTTATTTTCTTATTTCCTTTCTCTCCGCTACCTTACCTTTTTTTTCCTGATTTTTTTTTTCTCCCTTTTTCCCGCCTTTTTTTTTTTCCCTCACTCCTCCCTATTCATTTTCCGTAATTTTCCTTTTTTTTCATATCTCTTCCTAATGTTCTCTACCCATACCCCTTTTCTTTGCCCACATCGCCCTTTCGGTTCCCAGATTTACCCCCTTACATCATACGTTCTTCCTTTTCTTCGTTGAACTCTCAACTTCTTTTTCCCCTTGTTCTTTTTCACCCTCCACAAACACCTTTTACCTCTTTCTCCCCCTTTTTTTCTTTTTTCGCATCCCCCCCCCCTATCATCCCTTACGTTCCTTTTCCGCCTTATTCCCCCCCCTCTCTTTCCTCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1664#0 GAGCCGGAGATGGGGGCGCAGCCTCAGCAGCAGTGGGAGGGCGCGGTGGAGGCGCGGCTG 60 consensus_1664#1 ------------------------------------------------------------ consensus_1664#0 CCGTCGACACCGGCCGCCGCGGCGTGGCCGCACCTTGCCGCCTTCTGCTCGCTGCACCGC 120 consensus_1664#1 ------------------------------------------------------------ consensus_1664#0 TACAACCCCGGCATCGACGTCTGCGAGCGCGTCGCCGGCGACGACGGCGTCCCCGGCTGC 180 consensus_1664#1 ------------------------------------------------------------ consensus_1664#0 GTCCGCTACGTCGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGAC 240 consensus_1664#1 -----------CGCCTCCCGCCCGCCACCACCACCTCCGCGAGCTAAGGATGGTGGTGAC 49 ************************************************* consensus_1664#0 GACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGG 300 consensus_1664#1 GACGACGACGACGACCAGCAGCCGGCGGCCGCCGCCGCCGGGGTGGAGACGTGGGCGCGG 109 ************************************************************ consensus_1664#0 GAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGC 360 consensus_1664#1 GAGGAGCTTCTCGAGAGGGACGACGCCCGGCGCCGCCTCGTCTACGCCGTCGTCGGCAGC 169 ************************************************************ consensus_1664#0 AACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGAC 420 consensus_1664#1 AACTTGGGGTTCGGCCGCTACGTCGCCACCATGACGCTCGTCGACGACGACGGCGAGGAC 229 ************************************************************ consensus_1664#0 GTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGCCGCCGCAGGGTGCAAGCTCGTGTGG 480 consensus_1664#1 GTGGATGTCAACGCTCCGGCGCCGGCGGCCGCCGNCGNCGCAGGGTCCAAGCTCGTGTGG 289 ********************************** ** ******** ************* consensus_1664#0 GCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGCTTGCTCGCCTACCTCGAC 540 consensus_1664#1 GCGTTCGAGTGCGAGCCCGTGAAGGGGTGGACAAGGGACGGTATGCTTGTTTTCCTTGAC 349 ***************************************** **** * * *** *** consensus_1664#0 GCCGCCGGCAAGGGCATGGCCGAGCGGATCGAGGCCGCCGCCGCCGCCGCCGTCACCGAC 600 consensus_1664#1 GACGTCGGTAAGGGTATGGTCGAGCGGATCGTGGCCGCCGTCGCCGTTGTCGTTTTTTTA 409 * ** *** ***** **** *********** ******** ***** * *** consensus_1664#0 ATTGCCGTAGAAGACGACGCCGCCGCCGCTCGCAGCTAGAAGAATAAATCGAGTAAACTT 660 consensus_1664#1 TTTGTTGCA-AACACGACGTCGTCGTCGTTTCCCATTTTTTCCATTCCTTCAGTTATTTT 468 *** * * ** ****** ** ** ** * * * ** * *** * ** consensus_1664#0 TTAATTACTTTTC---CTGCTTAATTAGCCTCTTCTAA-TGATTTGTTTGGTTCATCTAG 716 consensus_1664#1 CTTATTTCCTTTCTCTCCGCTACCTTACCTTTTTTTTCCTGATTTTTTTTTTCTCCCTTT 528 * *** * **** * *** *** * * ** * ****** *** * ** consensus_1664#0 ATATCAAGTCACATTTTATTACTCTTTA------ATTCATCGTGTAAAAGTCTAAAAGAA 770 consensus_1664#1 TTCCCGCCTTTTTTTTTTTCCCTCACTCCTCCCTATTCATTTTCCGTAATTTTCCTTTTT 588 * * * **** * *** * ****** * ** * * consensus_1664#0 CAT-ATATTAGAAGGTAGTGTTCGTTTGCTAGTCAATGTGTACGTGGACGATGGTGAAAT 829 consensus_1664#1 TTTCATATCTCTTCCTAATGTTC-TCTACCCATACCCCTTTTCTTTGCCCACATCGCCCT 647 * **** ** ***** * * * * * * * * * * * * * consensus_1664#0 ATT--TTTCCATATGTGAGACTTTTTA--------------------------------- 854 consensus_1664#1 TTCGGTTCCCAGATTTACCCCCTTACATCATACGTTCTTCCTTTTCTTCGTTGAACTCTC 707 * ** *** ** * * ** * consensus_1664#0 ------------------------------------------------------------ consensus_1664#1 AACTTCTTTTTCCCCTTGTTCTTTTTCACCCTCCACAAACACCTTTTACCTCTTTCTCCC 767 consensus_1664#0 ------------------------------------------------------------ consensus_1664#1 CCTTTTTTTCTTTTTTCGCATCCCCCCCCCCTATCATCCCTTACGTTCCTTTTCCGCCTT 827 consensus_1664#0 ------------------------- consensus_1664#1 ATTCCCCCCCCTCTCTTTCCTCCCC 852 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||