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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1229 fasta sequence
[CAGTGACAACAACTAACTAAGATGACCTCACAGCAATTAGGCTACTGCTGGGTCCTCCTAATTGCCTTGCTATCGTGCAGCGCAGCCACTGCCAGCGAGGTCCCGGCGATCATCGTGTTCGGGGACTCGACGGTCGACGCCGGCAACAACAACTACATCCTCACCGTCGCCAAGGGCAATTTCCCGCCTTATGGTCGCGACTTCGACGGCGGCGTCGCCACCGGCCGCTTCTCCAATGGCCGCCTTGTCACCGACTTCGTGTCGGAGGCGCTGGGGCTGCCGTCCTCTGTGCCGGCCTATCTCGACTCCACCTACACCATTGATCAGCTTGCTACTGGTGTCAGCTTTGCTCCAGGCGGCACCGGGCTCGATAGTCTCACTGCCAGAGTTGTATCCGTGATACCACTGAGCCAGCAGCTGGAATACTTCAAGGAATACATAGAAAAGCTAAAGCAAGCCAAGGGCGAAGATGTCGCGAACGAGATCATCACCGAAGCGCTCTACGTCTTCAGTATCGGCACCAACGATTTCATCATCAACTACTTTAATCTGCCTCTCCGGCGCGCAGTCTACACCACGGCGGAGTACACCGCTTACCTCGTTGGCGAGGCTGCAGCCGCCGTCCGCGACACCCACGAGCTCGGTGCCCACAAGATCATATTTGCCGGGCTCGCGCCGATCGGGTGCTTGCCATCGGCGAGGACGCTGAACCACGATGCGCCGGGGGAGTGCAACGAAGAGCACAGCCAGGTGGCGGTGGCATTCAACACCGCACTGACGGAGGCCATCGGCAAGCTCAACGACGAGCTCACCGGATTAAGGGTGGTATATTCAGATACTTACAGTGTTTTGTCCGCCATCCTGTCCAACCCGTCATACTACGGGTTTGTGAATATAGCTCAAGGTTGCTGTGGCACAGGACTTATTGAGACATCCGTCCTTTGCGGCTTCAACGATCATTTGACATGTCAAGATGCTAATTCTTATGTGTTCTTCGATTCAGTCCATCCGTCGGAGAGAACATATCAGATTATAGCTAACAAAATCATTAATACAGATCTTAAATTAGTACTATGATATGTATGTTCCGAGTTTACATGTAATGATAATTGAAATCTATACTGAGATATAAGCTAGTTGAACTTTACTACAGCCATCCACGAAAAAGTGTACGCGATCATTCCTGACCATCTGATCTCAAGATTCAATGGCCAAAATCGATTCCATGC]
[+] EMBL AK061026 [CAGTGACAACAACTAACTAAGATGACCTCACAGCAATTAGGCTACTGCTGGGTCCTCCTAATTGCCTTGCTATCGTGCAGCGCAGCCACTGCCAGCGAGGTCCCGGCGATCATCGTGTTCGGGGACTCGACGGTCGACGCCGGCAACAACAACTACATCCTCACCGTCGCCAAGGGCAATTTCCCGCCTTATGGTCGCGACTTCGACGGCGGCGTCGCCACCGGCCGCTTCTCCAATGGCCGCCTTGTCACCGACTTCGTGTCGGAGGCGCTGGGGCTGCCGTCCTCTGTGCCGGCCTATCTCGACTCCACCTACACCATTGATCAGCTTGCTACTGGTGTCAGCTTTGCTCCAGGCGGCACCGGGCTCGATAGTCTCACTGCCAGAGTTGTATCCGTGATACCACTGAGCCAGCAGCTGGAATACTTCAAGGAATACATAGAAAAGCTAAAGCAAGCCAAGGGCGAAGATGTCGCGAACGAGATCATCACCGAAGCGCTCTACGTCTTCAGTATCGGCACCAACGATTTCATCATCAACTACTTTAATCTGCCTCTCCGGCGCGCAGTCTACACCACGGCGGAGTACACCGCTTACCTCGTTGGCGAGGCTGCAGCCGCCGTCCGCGACACCCACGAGCTCGGTGCCCACAAGATCATATTTGCCGGGCTCGCGCCGATCGGGTGCTTGCCATCGGCGAGGACGCTGAACCACGATGCGCCGGGGGAGTGCAACGAAGAGCACAGCCAGGTGGCGGTGGCATTCAACACCGCACTGACGGAGGCCATCGGCAAGCTCAACGACGAGCTCACCGGATTAAGGGTGGTATATTCAGATACTTACAGTGTTTTGTCCGCCATCCTGTCCAACCCGTCATACTACGGGTTTGTGAATATAGCTCAAGGTTGCTGTGGCACAGGACTTATTGAGACATCCGTCCTTTGCGGCTTCAACGATCATTTGACATGTCAAGATGCTAATTCTTATGTGTTCTTCGATTCAGTCCATCCGTCGGAGAGAACATATCAGATTATAGCTAACAAAATCATTAATACAGATCTTAAATTAGTACTATGATATGTATGTTCCGAGTTTACATGTAATGATAATTGAAATCTATACTGAGATATAAGCTAGTTGAACTTTACTACAGCCATCCACGAAAAAGTGTACGCGATCATTCCTGACCATCTGATCTCAAGATTCAATGGCCAAAATCGATTCCATGC]
consensusID : consensus_1666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1058 fasta sequence
[CAGTGACAACAACTAACTAAGATGACCTCACAGCAATTAGGCTACTGCTGGGTCCTCCTAATTGCCTTGCTATCGTGCAGCGCAGCCACTGCCAGCGAGGTCCCGGCGATCATCGTGTTCGGGGACTCGACGGTCGACGCCGGCAACAACAACTACATCCTCACCGTCGCCAAGGGCAATTTCCCGCCTTATGGTCGCGACTTCGACGGCGGCGTCGCCACCGGCCGCTTCTCCAATGGCCGCCTTGTCACCGACTTCGTGTCGGAGGCGCTGGGGCTGCCGTCCTCTGTGCCGGCCTATCTCGACTCCACCTACACCATTGATCAGCTTGCTACTGGTGTCAGCTTTGCTTCAGGCGGCACCGGGCTCGATAGTCTCACTGCCAGAGTTGTATCCGTGATACCACTGAGCCAGCAGCTGGAATACTTCAAGGAATACATAGAAAAGCTAAAGCAAGCCAAGGGCGAAGATGTCGCGAACGAGATCATCACCGAAGCGCTCTACGTCTTCAGTATCGGCACCAACGATTTCATCATCAACTACTTTAATCTGCCTCTCCGGCGCGCAGTCTACACCACGGCGGAGTACACCGCTTACCTCGTTGGCGAGGCTGCAGCCGCCGTCCGCGACACCCACGAGCTCGGTGCCCACAAGATCATATTTGCCGGGCTCGCGCCGATCGGGTGCTTGCCATCGGCGAGGACGCTGAACCACGATGCGCCGGGGGAGTGCAACGAAGAGCACAGCCAGGTGGCGGTGGCATTCAACACCGCACTGACGGAGGCCATCGGCAAGCTCAACGACGAGCTCACCGGATTAAGGGTGGTATATTCAGATACTTACAGTGTTTTGTCCGCCATCCTGTCCAACCCGTCATACTACGGTTAGTGCTCAATCTTGCTCGTGTTTTTTATTTTTCATTTTTAAGACCTAAGGTCCGTTGAAAATAAATCCAATAGATTATGTGTTTTATAATTTTATTTGAAACAACCCGTATTAGATAGTGCGATGTTTCTATTGATATAGCATGAAAAAATACAAATCTATAGTCCTGGGTG]
[+] EMBL AK060124 [CAGTGACAACAACTAACTAAGATGACCTCACAGCAATTAGGCTACTGCTGGGTCCTCCTAATTGCCTTGCTATCGTGCAGCGCAGCCACTGCCAGCGAGGTCCCGGCGATCATCGTGTTCGGGGACTCGACGGTCGACGCCGGCAACAACAACTACATCCTCACCGTCGCCAAGGGCAATTTCCCGCCTTATGGTCGCGACTTCGACGGCGGCGTCGCCACCGGCCGCTTCTCCAATGGCCGCCTTGTCACCGACTTCGTGTCGGAGGCGCTGGGGCTGCCGTCCTCTGTGCCGGCCTATCTCGACTCCACCTACACCATTGATCAGCTTGCTACTGGTGTCAGCTTTGCTTCAGGCGGCACCGGGCTCGATAGTCTCACTGCCAGAGTTGTATCCGTGATACCACTGAGCCAGCAGCTGGAATACTTCAAGGAATACATAGAAAAGCTAAAGCAAGCCAAGGGCGAAGATGTCGCGAACGAGATCATCACCGAAGCGCTCTACGTCTTCAGTATCGGCACCAACGATTTCATCATCAACTACTTTAATCTGCCTCTCCGGCGCGCAGTCTACACCACGGCGGAGTACACCGCTTACCTCGTTGGCGAGGCTGCAGCCGCCGTCCGCGACACCCACGAGCTCGGTGCCCACAAGATCATATTTGCCGGGCTCGCGCCGATCGGGTGCTTGCCATCGGCGAGGACGCTGAACCACGATGCGCCGGGGGAGTGCAACGAAGAGCACAGCCAGGTGGCGGTGGCATTCAACACCGCACTGACGGAGGCCATCGGCAAGCTCAACGACGAGCTCACCGGATTAAGGGTGGTATATTCAGATACTTACAGTGTTTTGTCCGCCATCCTGTCCAACCCGTCATACTACGGTTAGTGCTCAATCTTGCTCGTGTTTTTTATTTTTCATTTTTAAGACCTAAGGTCCGTTGAAAATAAATCCAATAGATTATGTGTTTTATAATTTTATTTGAAACAACCCGTATTAGATAGTGCGATGTTTCTATTGATATAGCATGAAAAAATACAAATCTATAGTCCTGGGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1666#0 CAGTGACAACAACTAACTAAGATGACCTCACAGCAATTAGGCTACTGCTGGGTCCTCCTA 60
consensus_1666#1 CAGTGACAACAACTAACTAAGATGACCTCACAGCAATTAGGCTACTGCTGGGTCCTCCTA 60
************************************************************
consensus_1666#0 ATTGCCTTGCTATCGTGCAGCGCAGCCACTGCCAGCGAGGTCCCGGCGATCATCGTGTTC 120
consensus_1666#1 ATTGCCTTGCTATCGTGCAGCGCAGCCACTGCCAGCGAGGTCCCGGCGATCATCGTGTTC 120
************************************************************
consensus_1666#0 GGGGACTCGACGGTCGACGCCGGCAACAACAACTACATCCTCACCGTCGCCAAGGGCAAT 180
consensus_1666#1 GGGGACTCGACGGTCGACGCCGGCAACAACAACTACATCCTCACCGTCGCCAAGGGCAAT 180
************************************************************
consensus_1666#0 TTCCCGCCTTATGGTCGCGACTTCGACGGCGGCGTCGCCACCGGCCGCTTCTCCAATGGC 240
consensus_1666#1 TTCCCGCCTTATGGTCGCGACTTCGACGGCGGCGTCGCCACCGGCCGCTTCTCCAATGGC 240
************************************************************
consensus_1666#0 CGCCTTGTCACCGACTTCGTGTCGGAGGCGCTGGGGCTGCCGTCCTCTGTGCCGGCCTAT 300
consensus_1666#1 CGCCTTGTCACCGACTTCGTGTCGGAGGCGCTGGGGCTGCCGTCCTCTGTGCCGGCCTAT 300
************************************************************
consensus_1666#0 CTCGACTCCACCTACACCATTGATCAGCTTGCTACTGGTGTCAGCTTTGCTCCAGGCGGC 360
consensus_1666#1 CTCGACTCCACCTACACCATTGATCAGCTTGCTACTGGTGTCAGCTTTGCTTCAGGCGGC 360
*************************************************** ********
consensus_1666#0 ACCGGGCTCGATAGTCTCACTGCCAGAGTTGTATCCGTGATACCACTGAGCCAGCAGCTG 420
consensus_1666#1 ACCGGGCTCGATAGTCTCACTGCCAGAGTTGTATCCGTGATACCACTGAGCCAGCAGCTG 420
************************************************************
consensus_1666#0 GAATACTTCAAGGAATACATAGAAAAGCTAAAGCAAGCCAAGGGCGAAGATGTCGCGAAC 480
consensus_1666#1 GAATACTTCAAGGAATACATAGAAAAGCTAAAGCAAGCCAAGGGCGAAGATGTCGCGAAC 480
************************************************************
consensus_1666#0 GAGATCATCACCGAAGCGCTCTACGTCTTCAGTATCGGCACCAACGATTTCATCATCAAC 540
consensus_1666#1 GAGATCATCACCGAAGCGCTCTACGTCTTCAGTATCGGCACCAACGATTTCATCATCAAC 540
************************************************************
consensus_1666#0 TACTTTAATCTGCCTCTCCGGCGCGCAGTCTACACCACGGCGGAGTACACCGCTTACCTC 600
consensus_1666#1 TACTTTAATCTGCCTCTCCGGCGCGCAGTCTACACCACGGCGGAGTACACCGCTTACCTC 600
************************************************************
consensus_1666#0 GTTGGCGAGGCTGCAGCCGCCGTCCGCGACACCCACGAGCTCGGTGCCCACAAGATCATA 660
consensus_1666#1 GTTGGCGAGGCTGCAGCCGCCGTCCGCGACACCCACGAGCTCGGTGCCCACAAGATCATA 660
************************************************************
consensus_1666#0 TTTGCCGGGCTCGCGCCGATCGGGTGCTTGCCATCGGCGAGGACGCTGAACCACGATGCG 720
consensus_1666#1 TTTGCCGGGCTCGCGCCGATCGGGTGCTTGCCATCGGCGAGGACGCTGAACCACGATGCG 720
************************************************************
consensus_1666#0 CCGGGGGAGTGCAACGAAGAGCACAGCCAGGTGGCGGTGGCATTCAACACCGCACTGACG 780
consensus_1666#1 CCGGGGGAGTGCAACGAAGAGCACAGCCAGGTGGCGGTGGCATTCAACACCGCACTGACG 780
************************************************************
consensus_1666#0 GAGGCCATCGGCAAGCTCAACGACGAGCTCACCGGATTAAGGGTGGTATATTCAGATACT 840
consensus_1666#1 GAGGCCATCGGCAAGCTCAACGACGAGCTCACCGGATTAAGGGTGGTATATTCAGATACT 840
************************************************************
consensus_1666#0 TACAGTGTTTTGTCCGCCATCCTGTCCAACCCGTCATACTACGGGTTTGTGAATATAGCT 900
consensus_1666#1 TACAGTGTTTTGTCCGCCATCCTGTCCAACCCGTCATACTACGG-TTAGTG-------CT 892
******************************************** ** *** **
consensus_1666#0 CAAGGTTGCTGTGGCACAGGACTTATTGAGACATCCGTCCTTTGCGGCTTCAACGATCAT 960
consensus_1666#1 CAATCTTGCT----CGTGTTTTTTATT------TTTCATTTTTAAGACCT-AAGGTCCGT 941
*** ***** * ***** * *** * * * ** * * *
consensus_1666#0 TTGACATGTCAAGATGCTAATTCTTATGTGTTCTTCGATTCAGTCCATCCGTCGGAGAGA 1020
consensus_1666#1 TGAAAAT----AAATCCAATAGATTATGTGTTTTATAATTTTATTTG------AAACAAC 991
* * ** * ** * * ********* * *** * * *
consensus_1666#0 ACATATCAGATTATAGCTAACAAAATCATTAATACAGATCTTAAATTAGTACTATGATAT 1080
consensus_1666#1 CCGTATTAGATAGTG--CGATGTTTCTATTGATATAG--CATGAAAAAATACAA--ATCT 1045
* *** **** * * *** *** ** * * ** * *** * ** *
consensus_1666#0 GTATGTTCCGAGTTTACATGTAATGATAATTGAAATCTATACTGAGATATAAGCTAGTTG 1140
consensus_1666#1 ATA-GTCCTGGGTG---------------------------------------------- 1058
** ** * * **
consensus_1666#0 AACTTTACTACAGCCATCCACGAAAAAGTGTACGCGATCATTCCTGACCATCTGATCTCA 1200
consensus_1666#1 ------------------------------------------------------------
consensus_1666#0 AGATTCAATGGCCAAAATCGATTCCATGC 1229
consensus_1666#1 -----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||