These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1691 fasta sequence [TAGAAATATCTTTAAAATTATTGCAATGGACACCTGCTTTTTTCTAACATGACCAACCTCCTTATATTACAATTGTAATCTAAAAAACTAAATGTTTCTAAAGCATATGCAGTTATTAATATTTTCACATCTGCCCCTCAAGTAGTTTCGGATTCAGAAGGTTTGCTTTCTATGTGCAGATGTCGTATTTCCATGTGATGGTTAACCTTTAGTTGATTTTGCCTTTTGAGCAGTTTTTTTTTTATCATCTTTTCTTCTATTGATAAGGAGCCATGTTCAAGGAGAAGCCAAACCTTAGCTCAAGCAAACCGGCTTTGTATCTTTGAAGAATAGAATCAGGGATGGATCCATTGAGCTGGTTATTAGACAAGTCACTGAAAAAACAGCACTTCAAATCATTCATTCATTTAAATTTTATATTAGGCACTAAAGATCCCATCAATTGCTGTAGAGACTTACATAACAGTGAGGGAATTTACTTGATAGTCTGGAATGGTGCCTGTCAGGTTGTTGTGTGATAAATCCCTGCATGTTTTTAGATGTTTAGGATTGCATCGATGTCCACCCAATTTCATTTAGTTTGTGAATGGTAGATAGCACTTACAATTTCTTCAGTGATGACATTTTCATGAATGATATTTCTAACTCTCCTTGCAGACCGCTGCCAGATAGATTTCTGCATAGCAACTCGTTTTAACATAGTAATAATATCCACCATCATTTTTTTTTTCAAAACCAAAATGTTTTGTTCTTACATTTCAACAATCCTTGGGTTCTGGCCACCATTAGGGTAGGTGCAAGTCAAACCATTCCAGTTTTTGATTACCATGTACTTCTCTTTGATTGTTTTCATGGAGTCAACTAAGCAAATGGTACAAACAACACAGAATAGGTGTCAATATATGATGCTTCAGTCAGCTTGGTCTCAGGATAATCTACATTAGCATTGATGTGTTTACTGTATGTTATGCAACAGGTTCCTTACAAATTGGAATGAGTAATAGTGAAGCCAATTGACGTACCATCACTTGAAGCAGTGGTGAAGTTCTCCACCTGGACACGGGAGTACACCTCATATGCGTTAATAAGAGGTGGTAGCTGTGAGTCTGGGGTCTTGCGAAGCTGAAAATATGCCCTTCTGCCTTTGCGCAAGAACCAGTTGTGGAACATGGAGCTCAGGAATGACGGTGGGCTGAAGTTGGAGAACAGTGCTTGCGGTTCATCGACATTGTAGATGTCAAAAATTCTCTTTGAACCATTATTGCCGAGTTCAACAAAGTGAAAGACTGGAAGAAGCTCTAGGTCTGTTGCGAGAGAGTTACTGGCACTAACGCTGATGTTGAGCCAAGAGAAGTTTCCGTTTATGGTTGAAGCGCTTCCCAGAATGGCTGGAGGAAGCCCAAAGGTGTCAATATTAGGAAGTTCAGCCACCTTGCCGTTGCTACTCTTATTAACCCATGGAAAGGTGTGCATGGTAAAGACCCAGCCCTCCCAGAAGCGATCATACTGATCCGTTGGGAATCTGACCATGACAGAGGACAAAACAAAGAAAAGATTATGCCAACGTAAATATAACTGGATTCAGCATTGTCATTGCCGTTGTTTTTGCTAAGCTTTAAGGCTTATGGCTATTGATGTACTCGCTCCGGTCATAAATATTTGATATTTGGAGTAAATTTTGATCATATTTT] [+] EMBL AK063466 [TAGAAATATCTTTAAAATTATTGCAATGGACACCTGCTTTTTTCTAACATGACCAACCTCCTTATATTACAATTGTAATCTAAAAAACTAAATGTTTCTAAAGCATATGCAGTTATTAATATTTTCACATCTGCCCCTCAAGTAGTTTCGGATTCAGAAGGTTTGCTTTCTATGTGCAGATGTCGTATTTCCATGTGATGGTTAACCTTTAGTTGATTTTGCCTTTTGAGCAGTTTTTTTTTTATCATCTTTTCTTCTATTGATAAGGAGCCATGTTCAAGGAGAAGCCAAACCTTAGCTCAAGCAAACCGGCTTTGTATCTTTGAAGAATAGAATCAGGGATGGATCCATTGAGCTGGTTATTAGACAAGTCACTGAAAAAACAGCACTTCAAATCATTCATTCATTTAAATTTTATATTAGGCACTAAAGATCCCATCAATTGCTGTAGAGACTTACATAACAGTGAGGGAATTTACTTGATAGTCTGGAATGGTGCCTGTCAGGTTGTTGTGTGATAAATCCCTGCATGTTTTTAGATGTTTAGGATTGCATCGATGTCCACCCAATTTCATTTAGTTTGTGAATGGTAGATAGCACTTACAATTTCTTCAGTGATGACATTTTCATGAATGATATTTCTAACTCTCCTTGCAGACCGCTGCCAGATAGATTTCTGCATAGCAACTCGTTTTAACATAGTAATAATATCCACCATCATTTTTTTTTTCAAAACCAAAATGTTTTGTTCTTACATTTCAACAATCCTTGGGTTCTGGCCACCATTAGGGTAGGTGCAAGTCAAACCATTCCAGTTTTTGATTACCATGTACTTCTCTTTGATTGTTTTCATGGAGTCAACTAAGCAAATGGTACAAACAACACAGAATAGGTGTCAATATATGATGCTTCAGTCAGCTTGGTCTCAGGATAATCTACATTAGCATTGATGTGTTTACTGTATGTTATGCAACAGGTTCCTTACAAATTGGAATGAGTAATAGTGAAGCCAATTGACGTACCATCACTTGAAGCAGTGGTGAAGTTCTCCACCTGGACACGGGAGTACACCTCATATGCGTTAATAAGAGGTGGTAGCTGTGAGTCTGGGGTCTTGCGAAGCTGAAAATATGCCCTTCTGCCTTTGCGCAAGAACCAGTTGTGGAACATGGAGCTCAGGAATGACGGTGGGCTGAAGTTGGAGAACAGTGCTTGCGGTTCATCGACATTGTAGATGTCAAAAATTCTCTTTGAACCATTATTGCCGAGTTCAACAAAGTGAAAGACTGGAAGAAGCTCTAGGTCTGTTGCGAGAGAGTTACTGGCACTAACGCTGATGTTGAGCCAAGAGAAGTTTCCGTTTATGGTTGAAGCGCTTCCCAGAATGGCTGGAGGAAGCCCAAAGGTGTCAATATTAGGAAGTTCAGCCACCTTGCCGTTGCTACTCTTATTAACCCATGGAAAGGTGTGCATGGTAAAGACCCAGCCCTCCCAGAAGCGATCATACTGATCCGTTGGGAATCTGACCATGACAGAGGACAAAACAAAGAAAAGATTATGCCAACGTAAATATAACTGGATTCAGCATTGTCATTGCCGTTGTTTTTGCTAAGCTTTAAGGCTTATGGCTATTGATGTACTCGCTCCGGTCATAAATATTTGATATTTGGAGTAAATTTTGATCATATTTT] consensusID : consensus_1689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 468 fasta sequence [AGAGTAGTTCCGTTTATGTTGAAGCGTTTCCCAGGATGTCTTGAGGAAGCCCAAGGTGTCAATATTAGGAAGTGCAGCCACCTTGCCGTTGCTACTCATATTAACCCATGGAAAGGTGTTATTGTAAAAGACCCAGCTCTCCCAGAAGCGATCAGAAGGATCTGTTGGAAATCTGACCATGACAGTGATGATTATGACCAAACGAAGAAAAAAGAAGTGCCCATGTAAATAGCATGCTTCAGCATTGTTATCTCCGTTGTTTTTGTTAGGCTTTGAGGCTTATGATTGTACAGTACCCATTTATTCAGCTATAACGAGATGTACGGATAGTACGGGGGTTGTAGAAACCGGCAGTTAGTTTCCATCTAAGAATCTAGTCTTCTTGTGTTCTTGTAGTTGATCATATTTGTAAAAGTTTAGTTTCTCGAGACTATTATATAAAAATCATATCACTAAATTTTTAAAAAA] [+] EMBL BM038494 [AGAGTAGTTCCGTTTATGTTGAAGCGTTTCCCAGGATGTCTTGAGGAAGCCCAAGGTGTCAATATTAGGAAGTGCAGCCACCTTGCCGTTGCTACTCATATTAACCCATGGAAAGGTGTTATTGTAAAAGACCCAGCTCTCCCAGAAGCGATCAGAAGGATCTGTTGGAAATCTGACCATGACAGTGATGATTATGACCAAACGAAGAAAAAAGAAGTGCCCATGTAAATAGCATGCTTCAGCATTGTTATCTCCGTTGTTTTTGTTAGGCTTTGAGGCTTATGATTGTACAGTACCCATTTATTCAGCTATAACGAGATGTACGGATAGTACGGGGGTTGTAGAAACCGGCAGTTAGTTTCCATCTAAGAATCTAGTCTTCTTGTGTTCTTGTAGTTGATCATATTTGTAAAAGTTTAGTTTCTCGAGACTATTATATAAAAATCATATCACTAAATTTTTAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1689#0 TAGAAATATCTTTAAAATTATTGCAATGGACACCTGCTTTTTTCTAACATGACCAACCTC 60 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 CTTATATTACAATTGTAATCTAAAAAACTAAATGTTTCTAAAGCATATGCAGTTATTAAT 120 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 ATTTTCACATCTGCCCCTCAAGTAGTTTCGGATTCAGAAGGTTTGCTTTCTATGTGCAGA 180 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 TGTCGTATTTCCATGTGATGGTTAACCTTTAGTTGATTTTGCCTTTTGAGCAGTTTTTTT 240 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 TTTATCATCTTTTCTTCTATTGATAAGGAGCCATGTTCAAGGAGAAGCCAAACCTTAGCT 300 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 CAAGCAAACCGGCTTTGTATCTTTGAAGAATAGAATCAGGGATGGATCCATTGAGCTGGT 360 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 TATTAGACAAGTCACTGAAAAAACAGCACTTCAAATCATTCATTCATTTAAATTTTATAT 420 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 TAGGCACTAAAGATCCCATCAATTGCTGTAGAGACTTACATAACAGTGAGGGAATTTACT 480 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 TGATAGTCTGGAATGGTGCCTGTCAGGTTGTTGTGTGATAAATCCCTGCATGTTTTTAGA 540 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 TGTTTAGGATTGCATCGATGTCCACCCAATTTCATTTAGTTTGTGAATGGTAGATAGCAC 600 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 TTACAATTTCTTCAGTGATGACATTTTCATGAATGATATTTCTAACTCTCCTTGCAGACC 660 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 GCTGCCAGATAGATTTCTGCATAGCAACTCGTTTTAACATAGTAATAATATCCACCATCA 720 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 TTTTTTTTTTCAAAACCAAAATGTTTTGTTCTTACATTTCAACAATCCTTGGGTTCTGGC 780 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 CACCATTAGGGTAGGTGCAAGTCAAACCATTCCAGTTTTTGATTACCATGTACTTCTCTT 840 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 TGATTGTTTTCATGGAGTCAACTAAGCAAATGGTACAAACAACACAGAATAGGTGTCAAT 900 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 ATATGATGCTTCAGTCAGCTTGGTCTCAGGATAATCTACATTAGCATTGATGTGTTTACT 960 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 GTATGTTATGCAACAGGTTCCTTACAAATTGGAATGAGTAATAGTGAAGCCAATTGACGT 1020 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 ACCATCACTTGAAGCAGTGGTGAAGTTCTCCACCTGGACACGGGAGTACACCTCATATGC 1080 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 GTTAATAAGAGGTGGTAGCTGTGAGTCTGGGGTCTTGCGAAGCTGAAAATATGCCCTTCT 1140 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 GCCTTTGCGCAAGAACCAGTTGTGGAACATGGAGCTCAGGAATGACGGTGGGCTGAAGTT 1200 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 GGAGAACAGTGCTTGCGGTTCATCGACATTGTAGATGTCAAAAATTCTCTTTGAACCATT 1260 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 ATTGCCGAGTTCAACAAAGTGAAAGACTGGAAGAAGCTCTAGGTCTGTTGCGAGAGAGTT 1320 consensus_1689#1 ------------------------------------------------------------ consensus_1689#0 ACTGGCACTAACGCTGATGTTGAGCCAAGAGAAGTTTCCGTTTATGGTTGAAGCGCTTCC 1380 consensus_1689#1 ---------------------------AGAGTAGTT-CCGTTTATG-TTGAAGCGTTTCC 31 **** **** ********* ******** **** consensus_1689#0 CAGAATGGCTGGAGGAAGCCCAAAGGTGTCAATATTAGGAAGTTCAGCCACCTTGCCGTT 1440 consensus_1689#1 CAGGATGTCTTGAGGAAGCCCAA-GGTGTCAATATTAGGAAGTGCAGCCACCTTGCCGTT 90 *** *** ** ************ ******************* **************** consensus_1689#0 GCTACTCTTATTAACCCATGGAAAGGTGTGCATGGTAAAGACCCAGCCCTCCCAGAAGCG 1500 consensus_1689#1 GCTACTCATATTAACCCATGGAAAGGTGTTATTGTAAAAGACCCAGCTCTCCCAGAAGCG 150 ******* ********************* ** *********** ************ consensus_1689#0 ATCATACTGATCCGTTGGGAATCTGACCATGACAGAG--------GACAAAACAAAGAAA 1552 consensus_1689#1 ATCAGAAGGATCTGTTGGAAATCTGACCATGACAGTGATGATTATGACCAAACGAAGAAA 210 **** * **** ***** **************** * *** **** ****** consensus_1689#0 AGATTA-TGCCAACGTAAATATAACTGGATTCAGCATTGTCATTGCCGTTGTTTTTGCTA 1611 consensus_1689#1 AAAGAAGTGCCCATGTAAATA--GCATGCTTCAGCATTGTTATCTCCGTTGTTTTTGTTA 268 * * * **** * ******* * * *********** ** ************ ** consensus_1689#0 AGCTTTAAGGCTTATGGCTATTGATGTACTCGCTCCGGTCATAAATATTTGATATTTGGA 1671 consensus_1689#1 GGCTTTGAGGCTTATGATTGTACA-GTACCCATTTATTCAGCTATAACGAGATGTACGGA 327 ***** ********* * * * **** * * * * *** * *** consensus_1689#0 GTAAATTTTGATCATATTTT---------------------------------------- 1691 consensus_1689#1 TAGTACGGGGGTTGTAGAAACCGGCAGTTAGTTTCCATCTAAGAATCTAGTCTTCTTGTG 387 * * * ** consensus_1689#0 ------------------------------------------------------------ consensus_1689#1 TTCTTGTAGTTGATCATATTTGTAAAAGTTTAGTTTCTCGAGACTATTATATAAAAATCA 447 consensus_1689#0 --------------------- consensus_1689#1 TATCACTAAATTTTTAAAAAA 468 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||