These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1229 fasta sequence [TCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTGGAGTAAGATGGCCATGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCGCCGCGCCCACGCGGCGCTCGACGCCGTGCTGCGGTTCAGTCCCGCGAGGCGGTGGCGCAACAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTCCTCTCCGAGAAGCTCTACGGCCGCGCCGGGCTCATGAGGTCGGTGGAAGTCTCGCCGGCGGTGAAGGACGCGGTTCTCAGGTCCTTGATGAGCAGCTACGGCAGGTCGAGCAGAGGACGCGCGGCGGAGCGGCGAGTCGGCAGCAAGGTCGACTGGCTGTGGTACGGCTCCCGAAAGAGCTGGGCGTCCGACGACGGCGACGGCTGCGTCAGCACCACCGACATCATCCTCGCGTGGCACGTCGCCACGAGGCTCTACGAGATGAGATGCTCGCTGCACGCTTCGTCTCCGACGCCGTCGGCATCATCGTCGGACATGGCCGCCGCGTGCCACCTCTCCAACTACTGCGCGTACCTGGCGTCGGCCGCGCCGGAGCTGCTGCCGGACATCGCCACGTGGACCGAGAAACGGTACAGGGAGGTGACGGCCGACGTCACCGCGGGCGCTGGGCAAGGACAGCGCCGCCGGTGAGACGACGACGGCGCAGCAGAGGTACGAGCGGCTCGTGGCGACGCTGAGCGCCGGCGCGCGCGACAAGGCGCTGCGTCGCGGCGCGGAGATCGCGCGCCGCCTTGCGGAGGAGTACACGACCGCCGCCGAGGACGACGACGAGGCGTCGGCGTGGCTGTTCCTGGCGGATTTCTGGTCGGAGATGATGCTCTACGTGGCGCCGTCGGAGAACGTCAAGGGGCACGTGGAGGCCATGGCGCGCGGCGGCGAGTTCGTCACGCTGCTCTGGGCGCTGCTCCTGCACGCCGGCATCACCGCTAGGCCTGAGGCGCCAAGCCGTATTATCCCGTAGGTTGTTACAGTGAAGTCTCCTGTCGGCTGTGGCCCCCGCGTTGTAGAATCAATTGCCGTATTGGTAGTTTTTGCATAGTATAAGCTGGTAGTAGTTCGCTTGTTGTCGTTCTCGTTTAGTTAAGCTAATTTGATTGTTTAATTTAGTATCGAACTGTAGTCCGATTTGCACCAGCACGCATTATCTTGTCCTCACACTATAGTGTATCG] [+] EMBL AK070305 [TCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTGGAGTAAGATGGCCATGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCGCCGCGCCCACGCGGCGCTCGACGCCGTGCTGCGGTTCAGTCCCGCGAGGCGGTGGCGCAACAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTCCTCTCCGAGAAGCTCTACGGCCGCGCCGGGCTCATGAGGTCGGTGGAAGTCTCGCCGGCGGTGAAGGACGCGGTTCTCAGGTCCTTGATGAGCAGCTACGGCAGGTCGAGCAGAGGACGCGCGGCGGAGCGGCGAGTCGGCAGCAAGGTCGACTGGCTGTGGTACGGCTCCCGAAAGAGCTGGGCGTCCGACGACGGCGACGGCTGCGTCAGCACCACCGACATCATCCTCGCGTGGCACGTCGCCACGAGGCTCTACGAGATGAGATGCTCGCTGCACGCTTCGTCTCCGACGCCGTCGGCATCATCGTCGGACATGGCCGCCGCGTGCCACCTCTCCAACTACTGCGCGTACCTGGCGTCGGCCGCGCCGGAGCTGCTGCCGGACATCGCCACGTGGACCGAGAAACGGTACAGGGAGGTGACGGCCGACGTCACCGCGGGCGCTGGGCAAGGACAGCGCCGCCGGTGAGACGACGACGGCGCAGCAGAGGTACGAGCGGCTCGTGGCGACGCTGAGCGCCGGCGCGCGCGACAAGGCGCTGCGTCGCGGCGCGGAGATCGCGCGCCGCCTTGCGGAGGAGTACACGACCGCCGCCGAGGACGACGACGAGGCGTCGGCGTGGCTGTTCCTGGCGGATTTCTGGTCGGAGATGATGCTCTACGTGGCGCCGTCGGAGAACGTCAAGGGGCACGTGGAGGCCATGGCGCGCGGCGGCGAGTTCGTCACGCTGCTCTGGGCGCTGCTCCTGCACGCCGGCATCACCGCTAGGCCTGAGGCGCCAAGCCGTATTATCCCGTAGGTTGTTACAGTGAAGTCTCCTGTCGGCTGTGGCCCCCGCGTTGTAGAATCAATTGCCGTATTGGTAGTTTTTGCATAGTATAAGCTGGTAGTAGTTCGCTTGTTGTCGTTCTCGTTTAGTTAAGCTAATTTGATTGTTTAATTTAGTATCGAACTGTAGTCCGATTTGCACCAGCACGCATTATCTTGTCCTCACACTATAGTGTATCG] consensusID : consensus_1695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence [CCTGGTGGCGGTGGCGCTCGTCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTGGAGTAAGATGGCCTTGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCGCCGCGCCCACGCGGGCTTCGACGNCATGCTGCGGTTCAGGCCCGCGAGGCGGTGGCGCAACAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTTCTCTCCGAGAAGCTCTACGGCCGCGCGGGCTCATGAGGTCGGTGGAAGTCTCGCCGGCGGTGAAGGCACGGTGCTCAGGTCCTTGATGAGCAGTACGGCAGGTCGAGCAGAGGAAGCNTAGGCGGGCGGANGGCGAGTCGGCGGAAAGGTCNCTTGCTGTGGAATTGTTCCCAAAGANTTGGCGTCG] [+] EMBL C72538 [CCTGGTGGCGGTGGCGCTCGTCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTGGAGTAAGATGGCCTTGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCGCCGCGCCCACGCGGGCTTCGACGNCATGCTGCGGTTCAGGCCCGCGAGGCGGTGGCGCAACAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTTCTCTCCGAGAAGCTCTACGGCCGCGCGGGCTCATGAGGTCGGTGGAAGTCTCGCCGGCGGTGAAGGCACGGTGCTCAGGTCCTTGATGAGCAGTACGGCAGGTCGAGCAGAGGAAGCNTAGGCGGGCGGANGGCGAGTCGGCGGAAAGGTCNCTTGCTGTGGAATTGTTCCCAAAGANTTGGCGTCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1695#0 --------------------TCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTG 40 consensus_1695#1 CCTGGTGGCGGTGGCGCTCGTCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTG 60 **************************************** consensus_1695#0 GAGTAAGATGGCCATGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCG 100 consensus_1695#1 GAGTAAGATGGCCTTGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCG 120 ************* ********************************************** consensus_1695#0 CCGCGCCCACGCGGCGCTCGACGCCGTGCTGCGGTTCAGTCCCGCGAGGCGGTGGCGCAA 160 consensus_1695#1 CCGCGCCCACGCGGGCTTCGACGNCATGCTGCGGTTCAGGCCCGCGAGGCGGTGGCGCAA 180 ************** ****** * ************* ******************** consensus_1695#0 CAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTCCT 220 consensus_1695#1 CAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTTCT 240 ********************************************************* ** consensus_1695#0 CTCCGAGAAGCTCTACGGCCGCGCCGGGCTCATGAGGTCGGTGGAAGTCTCGCCGGCGGT 280 consensus_1695#1 CTCCGAGAAGCTCTACGGCCGCGC-GGGCTCATGAGGTCGGTGGAAGTCTCGCCGGCGGT 299 ************************ *********************************** consensus_1695#0 GAAGGACGCGGTTCTCAGGTCCTTGATGAGCAGCTACGGCAGGTCGAGCAGAGGACGCG- 339 consensus_1695#1 GAAGG-CACGGTGCTCAGGTCCTTGATGAGCAG-TACGGCAGGTCGAGCAGAGGAAGCNT 357 ***** * **** ******************** ********************* ** consensus_1695#0 ---CGGCGGAGCGGCGAGTCGGCAGCAAGGTCGACTGGCTGTGGTACGGCTCCCGAAAGA 396 consensus_1695#1 AGGCGGGCGGANGGCGAGTCGGCGGAAAGGTCN-CTTGCTGTGGAATTGTTCCC-AAAGA 415 *** * *********** * ****** ** ******* * * **** ***** consensus_1695#0 GCTGGGCGTCCGACGACGGCGACGGCTGCGTCAGCACCACCGACATCATCCTCGCGTGGC 456 consensus_1695#1 NTTGG-CGTCG------------------------------------------------- 425 *** **** consensus_1695#0 ACGTCGCCACGAGGCTCTACGAGATGAGATGCTCGCTGCACGCTTCGTCTCCGACGCCGT 516 consensus_1695#1 ------------------------------------------------------------ consensus_1695#0 CGGCATCATCGTCGGACATGGCCGCCGCGTGCCACCTCTCCAACTACTGCGCGTACCTGG 576 consensus_1695#1 ------------------------------------------------------------ consensus_1695#0 CGTCGGCCGCGCCGGAGCTGCTGCCGGACATCGCCACGTGGACCGAGAAACGGTACAGGG 636 consensus_1695#1 ------------------------------------------------------------ consensus_1695#0 AGGTGACGGCCGACGTCACCGCGGGCGCTGGGCAAGGACAGCGCCGCCGGTGAGACGACG 696 consensus_1695#1 ------------------------------------------------------------ consensus_1695#0 ACGGCGCAGCAGAGGTACGAGCGGCTCGTGGCGACGCTGAGCGCCGGCGCGCGCGACAAG 756 consensus_1695#1 ------------------------------------------------------------ consensus_1695#0 GCGCTGCGTCGCGGCGCGGAGATCGCGCGCCGCCTTGCGGAGGAGTACACGACCGCCGCC 816 consensus_1695#1 ------------------------------------------------------------ consensus_1695#0 GAGGACGACGACGAGGCGTCGGCGTGGCTGTTCCTGGCGGATTTCTGGTCGGAGATGATG 876 consensus_1695#1 ------------------------------------------------------------ consensus_1695#0 CTCTACGTGGCGCCGTCGGAGAACGTCAAGGGGCACGTGGAGGCCATGGCGCGCGGCGGC 936 consensus_1695#1 ------------------------------------------------------------ consensus_1695#0 GAGTTCGTCACGCTGCTCTGGGCGCTGCTCCTGCACGCCGGCATCACCGCTAGGCCTGAG 996 consensus_1695#1 ------------------------------------------------------------ consensus_1695#0 GCGCCAAGCCGTATTATCCCGTAGGTTGTTACAGTGAAGTCTCCTGTCGGCTGTGGCCCC 1056 consensus_1695#1 ------------------------------------------------------------ consensus_1695#0 CGCGTTGTAGAATCAATTGCCGTATTGGTAGTTTTTGCATAGTATAAGCTGGTAGTAGTT 1116 consensus_1695#1 ------------------------------------------------------------ consensus_1695#0 CGCTTGTTGTCGTTCTCGTTTAGTTAAGCTAATTTGATTGTTTAATTTAGTATCGAACTG 1176 consensus_1695#1 ------------------------------------------------------------ consensus_1695#0 TAGTCCGATTTGCACCAGCACGCATTATCTTGTCCTCACACTATAGTGTATCG 1229 consensus_1695#1 ----------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||