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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1229 fasta sequence
[TCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTGGAGTAAGATGGCCATGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCGCCGCGCCCACGCGGCGCTCGACGCCGTGCTGCGGTTCAGTCCCGCGAGGCGGTGGCGCAACAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTCCTCTCCGAGAAGCTCTACGGCCGCGCCGGGCTCATGAGGTCGGTGGAAGTCTCGCCGGCGGTGAAGGACGCGGTTCTCAGGTCCTTGATGAGCAGCTACGGCAGGTCGAGCAGAGGACGCGCGGCGGAGCGGCGAGTCGGCAGCAAGGTCGACTGGCTGTGGTACGGCTCCCGAAAGAGCTGGGCGTCCGACGACGGCGACGGCTGCGTCAGCACCACCGACATCATCCTCGCGTGGCACGTCGCCACGAGGCTCTACGAGATGAGATGCTCGCTGCACGCTTCGTCTCCGACGCCGTCGGCATCATCGTCGGACATGGCCGCCGCGTGCCACCTCTCCAACTACTGCGCGTACCTGGCGTCGGCCGCGCCGGAGCTGCTGCCGGACATCGCCACGTGGACCGAGAAACGGTACAGGGAGGTGACGGCCGACGTCACCGCGGGCGCTGGGCAAGGACAGCGCCGCCGGTGAGACGACGACGGCGCAGCAGAGGTACGAGCGGCTCGTGGCGACGCTGAGCGCCGGCGCGCGCGACAAGGCGCTGCGTCGCGGCGCGGAGATCGCGCGCCGCCTTGCGGAGGAGTACACGACCGCCGCCGAGGACGACGACGAGGCGTCGGCGTGGCTGTTCCTGGCGGATTTCTGGTCGGAGATGATGCTCTACGTGGCGCCGTCGGAGAACGTCAAGGGGCACGTGGAGGCCATGGCGCGCGGCGGCGAGTTCGTCACGCTGCTCTGGGCGCTGCTCCTGCACGCCGGCATCACCGCTAGGCCTGAGGCGCCAAGCCGTATTATCCCGTAGGTTGTTACAGTGAAGTCTCCTGTCGGCTGTGGCCCCCGCGTTGTAGAATCAATTGCCGTATTGGTAGTTTTTGCATAGTATAAGCTGGTAGTAGTTCGCTTGTTGTCGTTCTCGTTTAGTTAAGCTAATTTGATTGTTTAATTTAGTATCGAACTGTAGTCCGATTTGCACCAGCACGCATTATCTTGTCCTCACACTATAGTGTATCG]
[+] EMBL AK070305 [TCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTGGAGTAAGATGGCCATGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCGCCGCGCCCACGCGGCGCTCGACGCCGTGCTGCGGTTCAGTCCCGCGAGGCGGTGGCGCAACAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTCCTCTCCGAGAAGCTCTACGGCCGCGCCGGGCTCATGAGGTCGGTGGAAGTCTCGCCGGCGGTGAAGGACGCGGTTCTCAGGTCCTTGATGAGCAGCTACGGCAGGTCGAGCAGAGGACGCGCGGCGGAGCGGCGAGTCGGCAGCAAGGTCGACTGGCTGTGGTACGGCTCCCGAAAGAGCTGGGCGTCCGACGACGGCGACGGCTGCGTCAGCACCACCGACATCATCCTCGCGTGGCACGTCGCCACGAGGCTCTACGAGATGAGATGCTCGCTGCACGCTTCGTCTCCGACGCCGTCGGCATCATCGTCGGACATGGCCGCCGCGTGCCACCTCTCCAACTACTGCGCGTACCTGGCGTCGGCCGCGCCGGAGCTGCTGCCGGACATCGCCACGTGGACCGAGAAACGGTACAGGGAGGTGACGGCCGACGTCACCGCGGGCGCTGGGCAAGGACAGCGCCGCCGGTGAGACGACGACGGCGCAGCAGAGGTACGAGCGGCTCGTGGCGACGCTGAGCGCCGGCGCGCGCGACAAGGCGCTGCGTCGCGGCGCGGAGATCGCGCGCCGCCTTGCGGAGGAGTACACGACCGCCGCCGAGGACGACGACGAGGCGTCGGCGTGGCTGTTCCTGGCGGATTTCTGGTCGGAGATGATGCTCTACGTGGCGCCGTCGGAGAACGTCAAGGGGCACGTGGAGGCCATGGCGCGCGGCGGCGAGTTCGTCACGCTGCTCTGGGCGCTGCTCCTGCACGCCGGCATCACCGCTAGGCCTGAGGCGCCAAGCCGTATTATCCCGTAGGTTGTTACAGTGAAGTCTCCTGTCGGCTGTGGCCCCCGCGTTGTAGAATCAATTGCCGTATTGGTAGTTTTTGCATAGTATAAGCTGGTAGTAGTTCGCTTGTTGTCGTTCTCGTTTAGTTAAGCTAATTTGATTGTTTAATTTAGTATCGAACTGTAGTCCGATTTGCACCAGCACGCATTATCTTGTCCTCACACTATAGTGTATCG]
consensusID : consensus_1695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 425 fasta sequence
[CCTGGTGGCGGTGGCGCTCGTCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTGGAGTAAGATGGCCTTGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCGCCGCGCCCACGCGGGCTTCGACGNCATGCTGCGGTTCAGGCCCGCGAGGCGGTGGCGCAACAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTTCTCTCCGAGAAGCTCTACGGCCGCGCGGGCTCATGAGGTCGGTGGAAGTCTCGCCGGCGGTGAAGGCACGGTGCTCAGGTCCTTGATGAGCAGTACGGCAGGTCGAGCAGAGGAAGCNTAGGCGGGCGGANGGCGAGTCGGCGGAAAGGTCNCTTGCTGTGGAATTGTTCCCAAAGANTTGGCGTCG]
[+] EMBL C72538 [CCTGGTGGCGGTGGCGCTCGTCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTGGAGTAAGATGGCCTTGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCGCCGCGCCCACGCGGGCTTCGACGNCATGCTGCGGTTCAGGCCCGCGAGGCGGTGGCGCAACAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTTCTCTCCGAGAAGCTCTACGGCCGCGCGGGCTCATGAGGTCGGTGGAAGTCTCGCCGGCGGTGAAGGCACGGTGCTCAGGTCCTTGATGAGCAGTACGGCAGGTCGAGCAGAGGAAGCNTAGGCGGGCGGANGGCGAGTCGGCGGAAAGGTCNCTTGCTGTGGAATTGTTCCCAAAGANTTGGCGTCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1695#0 --------------------TCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTG 40
consensus_1695#1 CCTGGTGGCGGTGGCGCTCGTCGAGGTATGGGACATCGTCGCCGGCGTGTGCTCCAATTG 60
****************************************
consensus_1695#0 GAGTAAGATGGCCATGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCG 100
consensus_1695#1 GAGTAAGATGGCCTTGCTCGGCCACTACATCAGGCACGAGCCACAGTGGCGTCGGTGTCG 120
************* **********************************************
consensus_1695#0 CCGCGCCCACGCGGCGCTCGACGCCGTGCTGCGGTTCAGTCCCGCGAGGCGGTGGCGCAA 160
consensus_1695#1 CCGCGCCCACGCGGGCTTCGACGNCATGCTGCGGTTCAGGCCCGCGAGGCGGTGGCGCAA 180
************** ****** * ************* ********************
consensus_1695#0 CAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTCCT 220
consensus_1695#1 CAAGATCGGGCAGAACTCGGTGCTGGAGCCCCGCCGCTTCTGCCGGCGGTCCGGCCTTCT 240
********************************************************* **
consensus_1695#0 CTCCGAGAAGCTCTACGGCCGCGCCGGGCTCATGAGGTCGGTGGAAGTCTCGCCGGCGGT 280
consensus_1695#1 CTCCGAGAAGCTCTACGGCCGCGC-GGGCTCATGAGGTCGGTGGAAGTCTCGCCGGCGGT 299
************************ ***********************************
consensus_1695#0 GAAGGACGCGGTTCTCAGGTCCTTGATGAGCAGCTACGGCAGGTCGAGCAGAGGACGCG- 339
consensus_1695#1 GAAGG-CACGGTGCTCAGGTCCTTGATGAGCAG-TACGGCAGGTCGAGCAGAGGAAGCNT 357
***** * **** ******************** ********************* **
consensus_1695#0 ---CGGCGGAGCGGCGAGTCGGCAGCAAGGTCGACTGGCTGTGGTACGGCTCCCGAAAGA 396
consensus_1695#1 AGGCGGGCGGANGGCGAGTCGGCGGAAAGGTCN-CTTGCTGTGGAATTGTTCCC-AAAGA 415
*** * *********** * ****** ** ******* * * **** *****
consensus_1695#0 GCTGGGCGTCCGACGACGGCGACGGCTGCGTCAGCACCACCGACATCATCCTCGCGTGGC 456
consensus_1695#1 NTTGG-CGTCG------------------------------------------------- 425
*** ****
consensus_1695#0 ACGTCGCCACGAGGCTCTACGAGATGAGATGCTCGCTGCACGCTTCGTCTCCGACGCCGT 516
consensus_1695#1 ------------------------------------------------------------
consensus_1695#0 CGGCATCATCGTCGGACATGGCCGCCGCGTGCCACCTCTCCAACTACTGCGCGTACCTGG 576
consensus_1695#1 ------------------------------------------------------------
consensus_1695#0 CGTCGGCCGCGCCGGAGCTGCTGCCGGACATCGCCACGTGGACCGAGAAACGGTACAGGG 636
consensus_1695#1 ------------------------------------------------------------
consensus_1695#0 AGGTGACGGCCGACGTCACCGCGGGCGCTGGGCAAGGACAGCGCCGCCGGTGAGACGACG 696
consensus_1695#1 ------------------------------------------------------------
consensus_1695#0 ACGGCGCAGCAGAGGTACGAGCGGCTCGTGGCGACGCTGAGCGCCGGCGCGCGCGACAAG 756
consensus_1695#1 ------------------------------------------------------------
consensus_1695#0 GCGCTGCGTCGCGGCGCGGAGATCGCGCGCCGCCTTGCGGAGGAGTACACGACCGCCGCC 816
consensus_1695#1 ------------------------------------------------------------
consensus_1695#0 GAGGACGACGACGAGGCGTCGGCGTGGCTGTTCCTGGCGGATTTCTGGTCGGAGATGATG 876
consensus_1695#1 ------------------------------------------------------------
consensus_1695#0 CTCTACGTGGCGCCGTCGGAGAACGTCAAGGGGCACGTGGAGGCCATGGCGCGCGGCGGC 936
consensus_1695#1 ------------------------------------------------------------
consensus_1695#0 GAGTTCGTCACGCTGCTCTGGGCGCTGCTCCTGCACGCCGGCATCACCGCTAGGCCTGAG 996
consensus_1695#1 ------------------------------------------------------------
consensus_1695#0 GCGCCAAGCCGTATTATCCCGTAGGTTGTTACAGTGAAGTCTCCTGTCGGCTGTGGCCCC 1056
consensus_1695#1 ------------------------------------------------------------
consensus_1695#0 CGCGTTGTAGAATCAATTGCCGTATTGGTAGTTTTTGCATAGTATAAGCTGGTAGTAGTT 1116
consensus_1695#1 ------------------------------------------------------------
consensus_1695#0 CGCTTGTTGTCGTTCTCGTTTAGTTAAGCTAATTTGATTGTTTAATTTAGTATCGAACTG 1176
consensus_1695#1 ------------------------------------------------------------
consensus_1695#0 TAGTCCGATTTGCACCAGCACGCATTATCTTGTCCTCACACTATAGTGTATCG 1229
consensus_1695#1 -----------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||