cluster # 1698

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Oryza sativa
cluster # 1698 cluster # 1698 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1698#0 length = 634 sequences # 1

consensus_1698#1 length = 597 sequences # 1

consensusID : consensus_1698#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 634
fasta sequence

                              [GCGCGTACTTGTCGGCGGCGGCGGATTCCGACGAGCCATGCTCCTCCTGCGGCGGCGAGGATGAAGACGTCGTTGCCGCCGTCGAGGAGGAGGAGGCTCACCTGAGCAAGGTGGAGGTGGAGGAGATCATGGAGCGGATAGGGCTGGGCGTGGGCGGCCATGGCGAGGGGCTGAAGGCGAGGATGGGGCGCGACGAGGTGTCGAGGCTGTTCGACGCCGACGAGCCCAGCTTCGCCGAGGTGCGCCGCGCCTTCGCCGTGTTCGACGGCAACGCCGACGGGTTCATCGACGCCGACGACCTGCGGGCCGCGCTCGCCAGGCTGGGGTTCCGGGAGGACGCCGCCGCGTGCCGCGCCATGATCGCGGCGAGCTGCGGCAGCGTCGACGCCAGGATGAACTTGTTCCAGTTCGTCAAGTTCCTCGAGACCGGCCTCTGCTAATCAAGGCTGATTAATTAATTTTTTTTCAATTTTTTTTTCCGTTTTGGGTTCGTTGCACGGTGCACGGCTCAGCTCGTGGCAGAAGATGAGAGAGCTAGTGGTGTGTGTTGCAAATTTTCCTCTTTTTTTTTCTTTTTCCTTCTGCGAGGCATGAGTTGGTGCTTTGTGCAACAATTAACGGACTAATCTGTCAA]

[+] EMBL AK105175             [GCGCGTACTTGTCGGCGGCGGCGGATTCCGACGAGCCATGCTCCTCCTGCGGCGGCGAGGATGAAGACGTCGTTGCCGCCGTCGAGGAGGAGGAGGCTCACCTGAGCAAGGTGGAGGTGGAGGAGATCATGGAGCGGATAGGGCTGGGCGTGGGCGGCCATGGCGAGGGGCTGAAGGCGAGGATGGGGCGCGACGAGGTGTCGAGGCTGTTCGACGCCGACGAGCCCAGCTTCGCCGAGGTGCGCCGCGCCTTCGCCGTGTTCGACGGCAACGCCGACGGGTTCATCGACGCCGACGACCTGCGGGCCGCGCTCGCCAGGCTGGGGTTCCGGGAGGACGCCGCCGCGTGCCGCGCCATGATCGCGGCGAGCTGCGGCAGCGTCGACGCCAGGATGAACTTGTTCCAGTTCGTCAAGTTCCTCGAGACCGGCCTCTGCTAATCAAGGCTGATTAATTAATTTTTTTTCAATTTTTTTTTCCGTTTTGGGTTCGTTGCACGGTGCACGGCTCAGCTCGTGGCAGAAGATGAGAGAGCTAGTGGTGTGTGTTGCAAATTTTCCTCTTTTTTTTTCTTTTTCCTTCTGCGAGGCATGAGTTGGTGCTTTGTGCAACAATTAACGGACTAATCTGTCAA]




>consensus_1698#0
GCGCGTACTTGTCGGCGGCGGCGGATTCCGACGAGCCATGCTCCTCCTGCGGCGGCGAGG
ATGAAGACGTCGTTGCCGCCGTCGAGGAGGAGGAGGCTCACCTGAGCAAGGTGGAGGTGG
AGGAGATCATGGAGCGGATAGGGCTGGGCGTGGGCGGCCATGGCGAGGGGCTGAAGGCGA
GGATGGGGCGCGACGAGGTGTCGAGGCTGTTCGACGCCGACGAGCCCAGCTTCGCCGAGG
TGCGCCGCGCCTTCGCCGTGTTCGACGGCAACGCCGACGGGTTCATCGACGCCGACGACC
TGCGGGCCGCGCTCGCCAGGCTGGGGTTCCGGGAGGACGCCGCCGCGTGCCGCGCCATGA
TCGCGGCGAGCTGCGGCAGCGTCGACGCCAGGATGAACTTGTTCCAGTTCGTCAAGTTCC
TCGAGACCGGCCTCTGCTAATCAAGGCTGATTAATTAATTTTTTTTCAATTTTTTTTTCC
GTTTTGGGTTCGTTGCACGGTGCACGGCTCAGCTCGTGGCAGAAGATGAGAGAGCTAGTG
GTGTGTGTTGCAAATTTTCCTCTTTTTTTTTCTTTTTCCTTCTGCGAGGCATGAGTTGGT
GCTTTGTGCAACAATTAACGGACTAATCTGTCAA

consensusID : consensus_1698#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 597
fasta sequence

                              [GCGCGTACTTGTCGGCGGCGGCGGATTCCGACGAGCCATGCTCCTCCTGCGGCGGCGAGGATGAAGACGTCGTTGCCGCCGTCGAGGAGGAGGAGGCTCACCTGAGCAAGGTGGAGGTGGAGGAGATCATGGAGCGGATAGGGCTGGGCGTGGGCGGCCATGGCGAGGGGCTGAAGGCGAGGATGGGGCGCGACGAGGTGTCGAGGCTGTTCGACGCCGACGAGCCCAGCTTCGCCGAGGTGCGCCGCGCCTTCGCCGTGTTCGACGGCAACGCCGACGGGTTCATCGACGCCGACGACCTGCGGGCCGCGCTCGCCAGGCTGGGGTTCCGGGAGGACGCCATCCCATGCCATTTTTTATTTCATGTGAAAGATTGTATGGTTGGTCGTGTTGTTATTCCCCCCTCCCCTCCTCTTTGTAATTTTTATTCCATTGTTGCCCCGCCGANAGTTTGTCCCTGATCTTGCAGGCACCCCCATCTTCACGGATTGTTACGAGTCTTTTATGCCGCCTCTCGTCCTCTTTTTGGTCCTACCGGACTATTCTTTATTTTCCTTACACCCCCCCTGGTCGATTCTCTTAGTACATTTCCCCCCA]

[+] EMBL CA756949             [GCGCGTACTTGTCGGCGGCGGCGGATTCCGACGAGCCATGCTCCTCCTGCGGCGGCGAGGATGAAGACGTCGTTGCCGCCGTCGAGGAGGAGGAGGCTCACCTGAGCAAGGTGGAGGTGGAGGAGATCATGGAGCGGATAGGGCTGGGCGTGGGCGGCCATGGCGAGGGGCTGAAGGCGAGGATGGGGCGCGACGAGGTGTCGAGGCTGTTCGACGCCGACGAGCCCAGCTTCGCCGAGGTGCGCCGCGCCTTCGCCGTGTTCGACGGCAACGCCGACGGGTTCATCGACGCCGACGACCTGCGGGCCGCGCTCGCCAGGCTGGGGTTCCGGGAGGACGCCATCCCATGCCATTTTTTATTTCATGTGAAAGATTGTATGGTTGGTCGTGTTGTTATTCCCCCCTCCCCTCCTCTTTGTAATTTTTATTCCATTGTTGCCCCGCCGANAGTTTGTCCCTGATCTTGCAGGCACCCCCATCTTCACGGATTGTTACGAGTCTTTTATGCCGCCTCTCGTCCTCTTTTTGGTCCTACCGGACTATTCTTTATTTTCCTTACACCCCCCCTGGTCGATTCTCTTAGTACATTTCCCCCCA]




>consensus_1698#1
GCGCGTACTTGTCGGCGGCGGCGGATTCCGACGAGCCATGCTCCTCCTGCGGCGGCGAGG
ATGAAGACGTCGTTGCCGCCGTCGAGGAGGAGGAGGCTCACCTGAGCAAGGTGGAGGTGG
AGGAGATCATGGAGCGGATAGGGCTGGGCGTGGGCGGCCATGGCGAGGGGCTGAAGGCGA
GGATGGGGCGCGACGAGGTGTCGAGGCTGTTCGACGCCGACGAGCCCAGCTTCGCCGAGG
TGCGCCGCGCCTTCGCCGTGTTCGACGGCAACGCCGACGGGTTCATCGACGCCGACGACC
TGCGGGCCGCGCTCGCCAGGCTGGGGTTCCGGGAGGACGCCATCCCATGCCATTTTTTAT
TTCATGTGAAAGATTGTATGGTTGGTCGTGTTGTTATTCCCCCCTCCCCTCCTCTTTGTA
ATTTTTATTCCATTGTTGCCCCGCCGANAGTTTGTCCCTGATCTTGCAGGCACCCCCATC
TTCACGGATTGTTACGAGTCTTTTATGCCGCCTCTCGTCCTCTTTTTGGTCCTACCGGAC
TATTCTTTATTTTCCTTACACCCCCCCTGGTCGATTCTCTTAGTACATTTCCCCCCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1698#0      GCGCGTACTTGTCGGCGGCGGCGGATTCCGACGAGCCATGCTCCTCCTGCGGCGGCGAGG 60
consensus_1698#1      GCGCGTACTTGTCGGCGGCGGCGGATTCCGACGAGCCATGCTCCTCCTGCGGCGGCGAGG 60
                      ************************************************************

consensus_1698#0      ATGAAGACGTCGTTGCCGCCGTCGAGGAGGAGGAGGCTCACCTGAGCAAGGTGGAGGTGG 120
consensus_1698#1      ATGAAGACGTCGTTGCCGCCGTCGAGGAGGAGGAGGCTCACCTGAGCAAGGTGGAGGTGG 120
                      ************************************************************

consensus_1698#0      AGGAGATCATGGAGCGGATAGGGCTGGGCGTGGGCGGCCATGGCGAGGGGCTGAAGGCGA 180
consensus_1698#1      AGGAGATCATGGAGCGGATAGGGCTGGGCGTGGGCGGCCATGGCGAGGGGCTGAAGGCGA 180
                      ************************************************************

consensus_1698#0      GGATGGGGCGCGACGAGGTGTCGAGGCTGTTCGACGCCGACGAGCCCAGCTTCGCCGAGG 240
consensus_1698#1      GGATGGGGCGCGACGAGGTGTCGAGGCTGTTCGACGCCGACGAGCCCAGCTTCGCCGAGG 240
                      ************************************************************

consensus_1698#0      TGCGCCGCGCCTTCGCCGTGTTCGACGGCAACGCCGACGGGTTCATCGACGCCGACGACC 300
consensus_1698#1      TGCGCCGCGCCTTCGCCGTGTTCGACGGCAACGCCGACGGGTTCATCGACGCCGACGACC 300
                      ************************************************************

consensus_1698#0      TGCGGGCCGCGCTCGCCAGGCTGGGGTTCCGGGAGGACGCCGCCGCGTGCCGCGCCATGA 360
consensus_1698#1      TGCGGGCCGCGCTCGCCAGGCTGGGGTTCCGGGAGGACGCCATCCCATGCCATTTTTTAT 360
                      *****************************************  * * ****      *  

consensus_1698#0      TCGCGGCGAGCTGCGGCAGCGTCGACGCCAGGATGAACTTGTTCCAGTTCGTCAAGTTCC 420
consensus_1698#1      TTCATGTGAAAGATTGTATGGTTG--GTCGTGTTG---TTATTCCCCCCTCCCCTCCTCT 415
                      *    * **      * *  ** *  * *  * **   ** ****       *    ** 

consensus_1698#0      TCGAGACCGGCCTCTGCTAATCAAGGCTGATTAATTAATTTTTTTTCAATTTTTTTTTCC 480
consensus_1698#1      TTGTAATT--TTTATTCCATTGTTGCCCCGCCGAN-AGTTTGTCCCTGATCTTGCAGGCA 472
                      * *  *      * * * * *   * *      *  * *** *     ** **     * 

consensus_1698#0      GTTTTGGGTTCGTTGCACGGTGCACGGCTCAGCTCGTGGCAGAAGATGAGAGAGCTAGTG 540
consensus_1698#1      CCCCCATCTTCACGGATTGTTACGAGTCTT---TTATGCC----GCCTCTCGTCCTCTTT 525
                              ***   *   * * *  * **    *  ** *    *      *  **  * 

consensus_1698#0      GTGTGTGTTGCAAATTTTCCTCTTTTTTTTTCTTTTTCCTTCTGCGAGGCATGAGTTGGT 600
consensus_1698#1      TTGGTCCTACCGGACTATTCTTTATTTTCCTTACACCCCCCCTG-GTCGATTCTCTTAGT 584
                       **    *  *  * * * ** * ****  *      **  *** *  *  *   ** **

consensus_1698#0      GCTTTGTGCAACAATTAACGGACTAATCTGTCAA 634
consensus_1698#1      ACATTTCCCCCCA--------------------- 597
                       * **   *  **