cluster # 1719

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Oryza sativa
cluster # 1719 cluster # 1719 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1719#0 length = 721 sequences # 1

consensus_1719#1 length = 442 sequences # 1

consensusID : consensus_1719#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 721
fasta sequence

                              [GGAGAGTGGTAGCTGGTGTATCAATGTTCACAGAACCAATTGCTGGTATTCCTTCTCCAGCTACTCAGACGGCTCAGGAGAGAAATACTGGCAGGGACAATGTTGAAACCATGAAGTCTTCTCGATCGACATGTACTGAACATATAATTCTTCTGTCAGATAGTGAAGAAAATTCATTGACAGCTGATGTGTCTGGTGAGGATGTTTTGTCATCAGTTAAAGATAGTGATGGATCTGGTACTTCAGATATGCAGAAAGAAGTCGAGCATTCTGAACCAAGGATGCCTACTGAAGATAGACACGTGTCACTAAAACAACAGATTTGCAGCCCGGCCAGTGATATTGTAGCATCTTCTAAACCTGTATCAAAAGATAGAAGTATAATTGCTGCCAAAGAAGGATTGGGTAGAGCAAAAATTCCAACTGTTCCAGTGAATACAAATGATACTTCCCTTTTACCAAAGAAGATTAAACCACCCACCACAACACCATCAGCAGCAGCAGCAGCAGCATGATGCATGAGAGAGTGAGCGAGTAGAACAATGCAGAGAGGATGATGCATTAGCATTAGCTATTAATTAGCTCTCCTTTAGCTTTTCTTCTCCTGTGTAATTCTTCCAAGACTGCAGTAACCCTCCCTGTTGTTAAGTTTAACTCATGCAGCAGCATCAGTTACTTAGGAGAGTAGATGCATTGTTGCCATGAGAGGTAATTAAATCTG]

[+] EMBL AK063595             [GGAGAGTGGTAGCTGGTGTATCAATGTTCACAGAACCAATTGCTGGTATTCCTTCTCCAGCTACTCAGACGGCTCAGGAGAGAAATACTGGCAGGGACAATGTTGAAACCATGAAGTCTTCTCGATCGACATGTACTGAACATATAATTCTTCTGTCAGATAGTGAAGAAAATTCATTGACAGCTGATGTGTCTGGTGAGGATGTTTTGTCATCAGTTAAAGATAGTGATGGATCTGGTACTTCAGATATGCAGAAAGAAGTCGAGCATTCTGAACCAAGGATGCCTACTGAAGATAGACACGTGTCACTAAAACAACAGATTTGCAGCCCGGCCAGTGATATTGTAGCATCTTCTAAACCTGTATCAAAAGATAGAAGTATAATTGCTGCCAAAGAAGGATTGGGTAGAGCAAAAATTCCAACTGTTCCAGTGAATACAAATGATACTTCCCTTTTACCAAAGAAGATTAAACCACCCACCACAACACCATCAGCAGCAGCAGCAGCAGCATGATGCATGAGAGAGTGAGCGAGTAGAACAATGCAGAGAGGATGATGCATTAGCATTAGCTATTAATTAGCTCTCCTTTAGCTTTTCTTCTCCTGTGTAATTCTTCCAAGACTGCAGTAACCCTCCCTGTTGTTAAGTTTAACTCATGCAGCAGCATCAGTTACTTAGGAGAGTAGATGCATTGTTGCCATGAGAGGTAATTAAATCTG]




>consensus_1719#0
GGAGAGTGGTAGCTGGTGTATCAATGTTCACAGAACCAATTGCTGGTATTCCTTCTCCAG
CTACTCAGACGGCTCAGGAGAGAAATACTGGCAGGGACAATGTTGAAACCATGAAGTCTT
CTCGATCGACATGTACTGAACATATAATTCTTCTGTCAGATAGTGAAGAAAATTCATTGA
CAGCTGATGTGTCTGGTGAGGATGTTTTGTCATCAGTTAAAGATAGTGATGGATCTGGTA
CTTCAGATATGCAGAAAGAAGTCGAGCATTCTGAACCAAGGATGCCTACTGAAGATAGAC
ACGTGTCACTAAAACAACAGATTTGCAGCCCGGCCAGTGATATTGTAGCATCTTCTAAAC
CTGTATCAAAAGATAGAAGTATAATTGCTGCCAAAGAAGGATTGGGTAGAGCAAAAATTC
CAACTGTTCCAGTGAATACAAATGATACTTCCCTTTTACCAAAGAAGATTAAACCACCCA
CCACAACACCATCAGCAGCAGCAGCAGCAGCATGATGCATGAGAGAGTGAGCGAGTAGAA
CAATGCAGAGAGGATGATGCATTAGCATTAGCTATTAATTAGCTCTCCTTTAGCTTTTCT
TCTCCTGTGTAATTCTTCCAAGACTGCAGTAACCCTCCCTGTTGTTAAGTTTAACTCATG
CAGCAGCATCAGTTACTTAGGAGAGTAGATGCATTGTTGCCATGAGAGGTAATTAAATCT
G

consensusID : consensus_1719#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 442
fasta sequence

                              [CACCACCATGGGCAGGGAAGAAGGGTGGAGGCGCCTGGTGGGGAGAGCCAGCACCATCCCCAGCGCCATCATGAGCCGGCGAGAAATGGCGTTCTTGGCGGCGTCGCGGTTGCTCACGCGGCGTCTACGNTCCACCACCACCACCATCACCACCACCACCCACCACAACACCATCAGCAGCAGCAGCAGCAGCATGATGCATGANAGAGTTAGCGAGTAGAACAATGCAGAGAGGATGATGCATTAGCATTAGCTATTAATTAGCTCTCCTTTAGCTTTTCTTCTNCTGTGTAATTCTTCCAAGACTGCAGTAACCCTCCCTGTTGTTAAGTTTAACTCATGCAGCAGCATCAGTTACTTAGGAGGAGTAAGATGCATTGTTTGCCATGAGGAGGTAAATTAAAATCTGATCTTANGGACATGCATGCACGCATTGNTTTTG]

[+] EMBL C26814               [CACCACCATGGGCAGGGAAGAAGGGTGGAGGCGCCTGGTGGGGAGAGCCAGCACCATCCCCAGCGCCATCATGAGCCGGCGAGAAATGGCGTTCTTGGCGGCGTCGCGGTTGCTCACGCGGCGTCTACGNTCCACCACCACCACCATCACCACCACCACCCACCACAACACCATCAGCAGCAGCAGCAGCAGCATGATGCATGANAGAGTTAGCGAGTAGAACAATGCAGAGAGGATGATGCATTAGCATTAGCTATTAATTAGCTCTCCTTTAGCTTTTCTTCTNCTGTGTAATTCTTCCAAGACTGCAGTAACCCTCCCTGTTGTTAAGTTTAACTCATGCAGCAGCATCAGTTACTTAGGAGGAGTAAGATGCATTGTTTGCCATGAGGAGGTAAATTAAAATCTGATCTTANGGACATGCATGCACGCATTGNTTTTG]




>consensus_1719#1
CACCACCATGGGCAGGGAAGAAGGGTGGAGGCGCCTGGTGGGGAGAGCCAGCACCATCCC
CAGCGCCATCATGAGCCGGCGAGAAATGGCGTTCTTGGCGGCGTCGCGGTTGCTCACGCG
GCGTCTACGNTCCACCACCACCACCATCACCACCACCACCCACCACAACACCATCAGCAG
CAGCAGCAGCAGCATGATGCATGANAGAGTTAGCGAGTAGAACAATGCAGAGAGGATGAT
GCATTAGCATTAGCTATTAATTAGCTCTCCTTTAGCTTTTCTTCTNCTGTGTAATTCTTC
CAAGACTGCAGTAACCCTCCCTGTTGTTAAGTTTAACTCATGCAGCAGCATCAGTTACTT
AGGAGGAGTAAGATGCATTGTTTGCCATGAGGAGGTAAATTAAAATCTGATCTTANGGAC
ATGCATGCACGCATTGNTTTTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1719#0      GGAGAGTGGTAGCTGGTGTATCAATGTTCACAGAACCAATTGCTGGTATTCCTTCTCCAG 60
consensus_1719#1      ------------------------------------------------------------
                                                                                  

consensus_1719#0      CTACTCAGACGGCTCAGGAGAGAAATACTGGCAGGGACAATGTTGAAACCATGAAGTCTT 120
consensus_1719#1      ------------------------------------------------------------
                                                                                  

consensus_1719#0      CTCGATCGACATGTACTGAACATATAATTCTTCTGTCAGATAGTGAAGAAAATTCATTGA 180
consensus_1719#1      ------------------------------------------------------------
                                                                                  

consensus_1719#0      CAGCTGATGTGTCTGGTGAGGATGTTTTGTCATCAGTTAAAGATAGTGATGGATCTGGTA 240
consensus_1719#1      ------------------------------------------------------------
                                                                                  

consensus_1719#0      CTTCAGATATGCAGAAAGAAGTCGAGCATTCTGAACCAAGGATGCCTACTGAAGATAGAC 300
consensus_1719#1      ---------------------------------------------------------CAC 3
                                                                                **

consensus_1719#0      ACGTGTCACTAAAACAACAGATTTGCAGC-CCGGCCAGTGATATTGTAGCATCTTCTAAA 359
consensus_1719#1      CACCATGGGCAGGGAAGAAGGGTGGAGGCGCCTGGTGGGGAGAGC-CAGCACCATCCCCA 62
                           *    *    *  **  * *  ** ** *   * ** *    **** * **   *

consensus_1719#0      CCTGTATCAAAAGATAGAAGTATAATTGCTGCCAAAGAAGGATTGGGTAGAGCAAAAATT 419
consensus_1719#1      GCGCCATCATGAGCCGGCGAGA-----------AATGGCGTTCTTGGCGGCG------TC 105
                       *   ****  **   *    *           ** *  *   * **  * *      * 

consensus_1719#0      CCAACTGTTCCAGTGAATACAAATGATACTTCCCTTTTACCAAAGAAGATTAAACCACCC 479
consensus_1719#1      GCGGTTGCTCACGCGG-CGTCTACGNTCCACCACCACCACCATCACCACC---ACCACCC 161
                       *   ** **  * *       * * * *  * *    ****           *******

consensus_1719#0      ACCACAACACCATCAGCAGCAGCAGCAGCAGCATGATGCATGAGAGAGTGAGCGAGTAGA 539
consensus_1719#1      ACCACAACACCATCAGCAGCAGCAGCAGCAGCATGATGCATGANAGAGTTAGCGAGTAGA 221
                      ******************************************* ***** **********

consensus_1719#0      ACAATGCAGAGAGGATGATGCATTAGCATTAGCTATTAATTAGCTCTCCTTTAGCTTTTC 599
consensus_1719#1      ACAATGCAGAGAGGATGATGCATTAGCATTAGCTATTAATTAGCTCTCCTTTAGCTTTTC 281
                      ************************************************************

consensus_1719#0      TTCTCCTGTGTAATTCTTCCAAGACTGCAGTAACCCTCCCTGTTGTTAAGTTTAACTCAT 659
consensus_1719#1      TTCTNCTGTGTAATTCTTCCAAGACTGCAGTAACCCTCCCTGTTGTTAAGTTTAACTCAT 341
                      **** *******************************************************

consensus_1719#0      GCAGCAGCATCAGTTACTTAGGAG-AGTA-GATGCATTGTT-GCCATGAG-AGGTAATT- 714
consensus_1719#1      GCAGCAGCATCAGTTACTTAGGAGGAGTAAGATGCATTGTTTGCCATGAGGAGGTAAATT 401
                      ************************ **** *********** ******** ****** * 

consensus_1719#0      -AAATCTG--------------------------------- 721
consensus_1719#1      AAAATCTGATCTTANGGACATGCATGCACGCATTGNTTTTG 442
                       *******