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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_173#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1160 fasta sequence
[CTAGAGCAAATAACTCATATCCGTAGAGCAAATAACTCATATTCCTAGAGTTTATCATTGGTGTAAGCTTCAATAGGTTAGTGCGCTTGGCGAATTCACAGGCCCTATCTTGTGGTATGAACTGGGTACGCGATGATTTGCACTGCGTATTGGGGGCTTACCATAAGATAATGCCATGAATTTGTCAAGCGTTCAAACCCACTGAAATGTTGTGTGAAGGTAAATATTTCAAAGTGTTCATGAAGAAAAGGCAGGTAAATATTTCGTTACTTCCCCGTGACATGCTAAGCCAGAAACAATCTCGCTGCATGTGATATGCTCAGCCAGAAACAGAAACAAAAGAGAAAAAGAGAGTTTCTTCCCAGCTTTTTTCATGTGTTGTCTGGTTAGAGCCTACTCGTTGAGTGCCTATAAAAGGAACGTTACGAACGAAAGAAGCAGACTCAAGAATAGTATATCATTGGTGTAAGCTTCAATAGGTTAGTGTACTTTGCGAATTCACAGGCCCTATATTGTGGTATGAACTGAGTACGCGATGATTTATGGTGCATATTGGGGGCTTACCATAAGATAATGCCATGAATTCGCAAAGTGTTCAAACCCACTAAAGTGTTATGTAAAGGTAAATATTTGTAAGTATTCGGGATGGAAAGGCAGGTAAATATTTAAAGTTTATTAATTTAGAAATGTAGCTGAGACATTAGAAAGTTTTAACACACAACATTACATATTAGTTTGAATGAGCAAAATATAAAAGCGTTCTACTCATTAGCCTCATCATCGAAATTTCGTGACGTGTTAGTGTCCTTTTTCTTTCCCTTTCTTCTAGCACCGGTTGGAGGTCTGCATCCTGACAAAGATAATCTTTTAGGTGAATGTCGCTCGCGGACAGACCTACGGACCACCTCAACACCGCTGAGATCAACGTGGCCGTAGTTTTGGGTCGCTGAGTTACTGGTGGCGATTCATCAAGCTGTGACGGTCCTATCTCGTGTTGTGCTGTTGACGACCCCCCACCGTAGCTATATGGTTCTCCGTAGGACTATGTGCTGCCAGCATATCCCATCATTTGTTCAGGGTTGTACATTCCTACAAAACATTGAATGCAAAGTTGTAGCGTACACACATAATGGAAATAAAATATTTTGTAGTAAATTATA]
[+] EMBL AK102950 [CTAGAGCAAATAACTCATATCCGTAGAGCAAATAACTCATATTCCTAGAGTTTATCATTGGTGTAAGCTTCAATAGGTTAGTGCGCTTGGCGAATTCACAGGCCCTATCTTGTGGTATGAACTGGGTACGCGATGATTTGCACTGCGTATTGGGGGCTTACCATAAGATAATGCCATGAATTTGTCAAGCGTTCAAACCCACTGAAATGTTGTGTGAAGGTAAATATTTCAAAGTGTTCATGAAGAAAAGGCAGGTAAATATTTCGTTACTTCCCCGTGACATGCTAAGCCAGAAACAATCTCGCTGCATGTGATATGCTCAGCCAGAAACAGAAACAAAAGAGAAAAAGAGAGTTTCTTCCCAGCTTTTTTCATGTGTTGTCTGGTTAGAGCCTACTCGTTGAGTGCCTATAAAAGGAACGTTACGAACGAAAGAAGCAGACTCAAGAATAGTATATCATTGGTGTAAGCTTCAATAGGTTAGTGTACTTTGCGAATTCACAGGCCCTATATTGTGGTATGAACTGAGTACGCGATGATTTATGGTGCATATTGGGGGCTTACCATAAGATAATGCCATGAATTCGCAAAGTGTTCAAACCCACTAAAGTGTTATGTAAAGGTAAATATTTGTAAGTATTCGGGATGGAAAGGCAGGTAAATATTTAAAGTTTATTAATTTAGAAATGTAGCTGAGACATTAGAAAGTTTTAACACACAACATTACATATTAGTTTGAATGAGCAAAATATAAAAGCGTTCTACTCATTAGCCTCATCATCGAAATTTCGTGACGTGTTAGTGTCCTTTTTCTTTCCCTTTCTTCTAGCACCGGTTGGAGGTCTGCATCCTGACAAAGATAATCTTTTAGGTGAATGTCGCTCGCGGACAGACCTACGGACCACCTCAACACCGCTGAGATCAACGTGGCCGTAGTTTTGGGTCGCTGAGTTACTGGTGGCGATTCATCAAGCTGTGACGGTCCTATCTCGTGTTGTGCTGTTGACGACCCCCCACCGTAGCTATATGGTTCTCCGTAGGACTATGTGCTGCCAGCATATCCCATCATTTGTTCAGGGTTGTACATTCCTACAAAACATTGAATGCAAAGTTGTAGCGTACACACATAATGGAAATAAAATATTTTGTAGTAAATTATA]
consensusID : consensus_173#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence
[ATATTGTGGTATGAACCTAGGTCCCCGATTATTTATTGGTGCCTATTGGGGGCCTTACCATAAAATTAATGCCATGAATTCGCAAAGGGTTCCAACCCCCCTAAAGTGTTATGTAAAGGTAAATATTTGTAAGTTATTCTTGATGGAAAGGCAGGTAAATATTTCAAGTTTATTTATTTAGAAATGTAGCTGAGCCCTTAAAAAGTTTTTACCCCCACCACTTCCATATTAGTTCGAATGAGCAAAATATAAAAGCGTTTTACTCATTAGCCTCATCATCGAAATTTCGTGACGTGTTAGTGTCCTTTTTCTTTCCCTTTTTTCTAGCCCCGGTTGGAGGTTTGCATCCTGCCAAAAATAATTTTTTAGGTGAATGGCGCCCCCGGACAGACCTATGGACCCCCTCAACCCCCCTGAGATCAACGTGGCCGTAGTTTTGGGTCCCTGAGTTACTGGTGGCGATTCATCAGGCTGTGACGGTCCTATGTTGTGTTGTGCTGTTGACGACCCCCCCCCGTAGCTATATGGTTTTCCGTAGGACTATGTGCTACCGGCATATCCCATCATTTGTTCAGGGTTGTCCCTTCCTCCAAAACCTTGAATGTAAAGTTGTAGCGTCCCCCCATAATGGAAATAAAATTTTTTGTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA760885 [ATATTGTGGTATGAACCTAGGTCCCCGATTATTTATTGGTGCCTATTGGGGGCCTTACCATAAAATTAATGCCATGAATTCGCAAAGGGTTCCAACCCCCCTAAAGTGTTATGTAAAGGTAAATATTTGTAAGTTATTCTTGATGGAAAGGCAGGTAAATATTTCAAGTTTATTTATTTAGAAATGTAGCTGAGCCCTTAAAAAGTTTTTACCCCCACCACTTCCATATTAGTTCGAATGAGCAAAATATAAAAGCGTTTTACTCATTAGCCTCATCATCGAAATTTCGTGACGTGTTAGTGTCCTTTTTCTTTCCCTTTTTTCTAGCCCCGGTTGGAGGTTTGCATCCTGCCAAAAATAATTTTTTAGGTGAATGGCGCCCCCGGACAGACCTATGGACCCCCTCAACCCCCCTGAGATCAACGTGGCCGTAGTTTTGGGTCCCTGAGTTACTGGTGGCGATTCATCAGGCTGTGACGGTCCTATGTTGTGTTGTGCTGTTGACGACCCCCCCCCGTAGCTATATGGTTTTCCGTAGGACTATGTGCTACCGGCATATCCCATCATTTGTTCAGGGTTGTCCCTTCCTCCAAAACCTTGAATGTAAAGTTGTAGCGTCCCCCCATAATGGAAATAAAATTTTTTGTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_173#0 CTAGAGCAAATAACTCATATCCGTAGAGCAAATAACTCATATTCCTAGAGTTTATCATTG 60
consensus_173#1 ------------------------------------------------------------
consensus_173#0 GTGTAAGCTTCAATAGGTTAGTGCGCTTGGCGAATTCACAGGCCCTATCTTGTGGTATGA 120
consensus_173#1 ------------------------------------------------------------
consensus_173#0 ACTGGGTACGCGATGATTTGCACTGCGTATTGGGGGCTTACCATAAGATAATGCCATGAA 180
consensus_173#1 ------------------------------------------------------------
consensus_173#0 TTTGTCAAGCGTTCAAACCCACTGAAATGTTGTGTGAAGGTAAATATTTCAAAGTGTTCA 240
consensus_173#1 ------------------------------------------------------------
consensus_173#0 TGAAGAAAAGGCAGGTAAATATTTCGTTACTTCCCCGTGACATGCTAAGCCAGAAACAAT 300
consensus_173#1 ------------------------------------------------------------
consensus_173#0 CTCGCTGCATGTGATATGCTCAGCCAGAAACAGAAACAAAAGAGAAAAAGAGAGTTTCTT 360
consensus_173#1 ------------------------------------------------------------
consensus_173#0 CCCAGCTTTTTTCATGTGTTGTCTGGTTAGAGCCTACTCGTTGAGTGCCTATAAAAGGAA 420
consensus_173#1 ------------------------------------------------------------
consensus_173#0 CGTTACGAACGAAAGAAGCAGACTCAAGAATAGTATATCATTGGTGTAAGCTTCAATAGG 480
consensus_173#1 ------------------------------------------------------------
consensus_173#0 TTAGTGTACTTTGCGAATTCACAGGCCCTATATTGTGGTATGAAC-TGAGTACGCGATGA 539
consensus_173#1 -----------------------------ATATTGTGGTATGAACCTAGGTCCCCGATTA 31
**************** * ** * **** *
consensus_173#0 TTTAT-GGTGCATATTGGGGGC-TTACCATAAGAT-AATGCCATGAATTCGCAAAGTGTT 596
consensus_173#1 TTTATTGGTGCCTATTGGGGGCCTTACCATAAAATTAATGCCATGAATTCGCAAAGGGTT 91
***** ***** ********** ********* ** ******************** ***
consensus_173#0 CAAACCCAC-TAAAGTGTTATGTAAAGGTAAATATTTGTAAGT-ATTCGGGATGGAAAGG 654
consensus_173#1 CCAACCCCCCTAAAGTGTTATGTAAAGGTAAATATTTGTAAGTTATTCTTGATGGAAAGG 151
* ***** * ********************************* **** **********
consensus_173#0 CAGGTAAATATTTAAAGTTTATTAATTTAGAAATGTAGCTGAGACATTAGAAAGTTTTAA 714
consensus_173#1 CAGGTAAATATTTCAAGTTTATTTATTTAGAAATGTAGCTGAGCCCTTAAAAAGTTTTTA 211
************* ********* ******************* * *** ******** *
consensus_173#0 CACACAACA-TTACATATTAGTTTGAATGAGCAAAATATAAAAGCGTTCTACTCATTAGC 773
consensus_173#1 CCCCCACCACTTCCATATTAGTTCGAATGAGCAAAATATAAAAGCGTTTTACTCATTAGC 271
* * ** ** ** ********** ************************ ***********
consensus_173#0 CTCATCATCGAAATTTCGTGACGTGTTAGTGTCCTTTTTCTTTCCCTTTCTTCTAGCACC 833
consensus_173#1 CTCATCATCGAAATTTCGTGACGTGTTAGTGTCCTTTTTCTTTCCCTTTTTTCTAGCCCC 331
************************************************* ******* **
consensus_173#0 GGTTGGAGGTCTGCATCCTGACAAAGATAATCTTTTAGGTGAATGTCGCTCGCGGACAGA 893
consensus_173#1 GGTTGGAGGTTTGCATCCTGCCAAAAATAATTTTTTAGGTGAATGGCGCCCCCGGACAGA 391
********** ********* **** ***** ************* *** * ********
consensus_173#0 CCTACGGACCACCTCAACACCGCTGAGATCAACGTGGCCGTAGTTTTGGGTCGCTGAGTT 953
consensus_173#1 CCTATGGACCCCCTCAACCCCCCTGAGATCAACGTGGCCGTAGTTTTGGGTCCCTGAGTT 451
**** ***** ******* ** ****************************** *******
consensus_173#0 ACTGGTGGCGATTCATCAAGCTGTGACGGTCCTATCTCGTGTTGTGCTGTTGACGACCCC 1013
consensus_173#1 ACTGGTGGCGATTCATCAGGCTGTGACGGTCCTATGTTGTGTTGTGCTGTTGACGACCCC 511
****************** **************** * **********************
consensus_173#0 CCACCGTAGCTATATGGTTCTCCGTAGGACTATGTGCTGCCAGCATATCCCATCATTTGT 1073
consensus_173#1 CCCCCGTAGCTATATGGTTTTCCGTAGGACTATGTGCTACCGGCATATCCCATCATTTGT 571
** **************** ****************** ** ******************
consensus_173#0 TCAGGGTTGTACATTCCTACAAAACATTGAATGCAAAGTTGTAGCGTACACACATAATGG 1133
consensus_173#1 TCAGGGTTGTCCCTTCCTCCAAAACCTTGAATGTAAAGTTGTAGCGTCCCCCCATAATGG 631
********** * ***** ****** ******* ************* * * ********
consensus_173#0 AAATAAAATATTTTGTAGTAAATTATA--------------------- 1160
consensus_173#1 AAATAAAATTTTTTGTAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 679
********* ************ * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||