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Oryza sativa
cluster # 1749 cluster # 1749       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1749#0 length = 2038 sequences # 2  

consensusID : consensus_1749#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2038
fasta sequence
                              [GACGCCGCGGGCTTAGTCCAGTGGAAGGTGTTCGTCCACTCGCGCTCGCACTCCCGCCGTTACGCGCGCGCGCGCCGCCGCCGCCCCGACCTCGCCGCGCGCGCCGACGAACCTAGATGCGGTGATGGGAAGAAGGGGCGCGGGCGCGGGCGCTGCGGTGGTGGTGGTCGCGGCCTTCGTGGCGGCGGCCGTGGCGTCGGGGGACACGCTCGCCGATCTCGGCGGCGCCGCCAAGGGGATCGACAGCGTGCCAGAAGTGAATAACTTGGGACCATGGGCGAAGGGGCTTCTGAAAGGGATGCCGGACTCGGCGGCAGGGCCAGCAGAGGGCCCCATCGCAAAGTATCCGCTGGTTCTGGCAGAGGAGAGGACGCGGCGGCCGGATGTTCTTGACCACCTTAGGATGTATGGAGGAGGGTGGAACATCACTAACAAGCACTATTGGGCGTCTGTTTCATTCACAGGAATTGCTGGGTTTGTTCTTGCTGCTGGGTGGTTTATTTCGTTTGGAATTGCTGTAGCTGCAAGCTGCTTTTGGAAATCAAGAATAGACAAAGAAAATGATTTTCATGCAGATATACTGCGCCTTGTGTTGCTTGTGGTCTTCATATTTACTTTAACGGCTGGATCTGTTATCCTCTTTTGTGGACAGAGTAAATTCGGACAAGAAGCTACTAGCACTGTCGATTTTGTTGTGAATCAATCTGATTTCACCATTCAGACGCTAAGGAATGTTACCGATTACTTATCGCTTGCAAAGACAATCAGTGTGGCAGCACTCTATCTTCCTTCAGATGTACAAGGGCAAATTGACAATTTGAAAGTGGACTTAAATAAAGCGGCTGATACTATATCCCAAAAGACATCAGAAAACTACAGAAGGATAAGAAAAGTTCTCCATAACTTGTCAGTTGCTTTGATTTGCATAGCTGCGTTGATGCCTGTTCTTGCATTCTTGGGATATGTTTTGGAGCTGTATGGACAAAGAAGTACAGTTTATGTATTTGTTACCTTATGCTGGACAGTAGTGGCAACTCTCTTCATTCTTCTAGGGATTTTCCTGATATTGAACAGTGCTGCAAAGGATACCTGTGAAGCAATGGATGAATGGGCACAACATCCTCAAGCAGAGACAGCTCTCAGCAACATCCTTCCACGTGTAGATGAAAGCACAACCAATCAAACCTTGTACCAGAGTAAACATGTTGTGGTAATTCTTGTAGGCATAGTTAATAGGGCTATATCTGCTCTTTCAAATCGAAGGCCACATCATAAACATCCTGGGCAGTTCATGCCTTACCTGTGTTCTCCCTATGATGCGAACCTGACTGATCGGCAGTGCAAGTCTAGGGAGGTCACCTTCGATAATGCAACCACAGCATGGCTGAACTATACATGCACAGTTCCTGACTCAGATTTGTGCTCTGGCTCCAGAACCATAACTCCAGAGATATACAGTCAGCTTGTTTTAGCTGCCAATGTAAGCTATGCTCTGTACCATTATGCCCCTCTCATGCTCAATCTCCAGGACTGCAAGTTCGTCCGCAACACATTCAGCTCCATCGCTTCGCAGTACTGCCCTCCTATATGGCGCGACCTCAGCTTGGTCTCAGCAGGCCTGGCTCTCATTGCCTCTGGCTTAACACTTGGCCTCCTCTTGATGCTTTTTGCGGACCGCCCCCAAAGGGAGGAGGTGTCCGAGCTGCCATCAGGGTCAAGGATCACCCCAGTAGACTGCTCTCCATGACGAGCTCAGTCTCTATGGTCATTCAGACTAGTATAGCAATTGCCTGTAATAGTTAGGAAAAGAAGAAGGTGAAGCACTGGGGCAAAGCCCCATTTTGCAGTGGAGATGATCTAGGTGGATGAGTGCTTCCTTCCGTGGTATACATGGTATGTTTCAGGGAATAGTTGTAAAGGCTAATGCCTAATGGCAAACAAAATTTGGGCAAAACCCCACTATGATATGAAGAGCAATGTTCTGTATCCCCTATGATTGTTCAGCTGGACATGTTTCTTTCTTATGTACATGTCTTGT]

[+] EMBL AK103404             [GACGCCGCGGGCTTAGTCCAGTGGAAGGTGTTCGTCCACTCGCGCTCGCACTCCCGCCGTTACGCGCGCGCGCGCCGCCGCCGCCCCGACCTCGCCGCGCGCGCCGACGAACCTAGATGCGGTGATGGGAAGAAGGGGCGCGGGCGCGGGCGCTGCGGTGGTGGTGGTCGCGGCCTTCGTGGCGGCGGCCGTGGCGTCGGGGGACACGCTCGCCGATCTCGGCGGCGCCGCCAAGGGGATCGACAGCGTGCCAGAAGTGAATAACTTGGGACCATGGGCGAAGGGGCTTCTGAAAGGGATGCCGGACTCGGCGGCAGGGCCAGCAGAGGGCCCCATCGCAAAGTATCCGCTGGTTCTGGCAGAGGAGAGGACGCGGCGGCCGGATGTTCTTGACCACCTTAGGATGTATGGAGGAGGGTGGAACATCACTAACAAGCACTATTGGGCGTCTGTTTCATTCACAGGAATTGCTGGGTTTGTTCTTGCTGCTGGGTGGTTTATTTCGTTTGGAATTGCTGTAGCTGCAAGCTGCTTTTGGAAATCAAGAATAGACAAAGAAAATGATTTTCATGCAGATATACTGCGCCTTGTGTTGCTTGTGGTCTTCATATTTACTTTAACGGCTGGATCTGTTATCCTCTTTTGTGGACAGAGTAAATTCGGACAAGAAGCTACTAGCACTGTCGATTTTGTTGTGAATCAATCTGATTTCACCATTCAGACGCTAAGGAATGTTACCGATTACTTATCGCTTGCAAAGACAATCAGTGTGGCAGCACTCTATCTTCCTTCAGATGTACAAGGGCAAATTGACAATTTGAAAGTGGACTTAAATAAAGCGGCTGATACTATATCCCAAAAGACATCAGAAAACTACAGAAGGATAAGAAAAGTTCTCCATAACTTGTCAGTTGCTTTGATTTGCATAGCTGCGTTGATGCCTGTTCTTGCATTCTTGGGATATGTTTTGGAGCTGTATGGACAAAGAAGTACAGTTTATGTATTTGTTACCTTATGCTGGACAGTAGTGGCAACTCTCTTCATTCTTCTAGGGATTTTCCTGATATTGAACAGTGCTGCAAAGGATACCTGTGAAGCAATGGATGAATGGGCACAACATCCTCAAGCAGAGACAGCTCTCAGCAACATCCTTCCACGTGTAGATGAAAGCACAACCAATCAAACCTTGTACCAGAGTAAACATGTTGTGGTAATTCTTGTAGGCATAGTTAATAGGGCTATATCTGCTCTTTCAAATCGAAGGCCACATCATAAACATCCTGGGCAGTTCATGCCTTACCTGTGTTCTCCCTATGATGCGAACCTGACTGATCGGCAGTGCAAGTCTAGGGAGGTCACCTTCGATAATGCAACCACAGCATGGCTGAACTATACATGCACAGTTCCTGACTCAGATTTGTGCTCTGGCTCCAGAACCATAACTCCAGAGATATACAGTCAGCTTGTTTTAGCTGCCAATGTAAGCTATGCTCTGTACCATTATGCCCCTCTCATGCTCAATCTCCAGGACTGCAAGTTCGTCCGCAACACATTCAGCTCCATCGCTTCGCAGTACTGCCCTCCTATATGGCGCGACCTCAGCTTGGTCTCAGCAGGCCTGGCTCTCATTGCCTCTGGCTTAACACTTGGCCTCCTCTTGATGCTTTTTGCGGACCGCCCCCAAAGGGAGGAGGTGTCCGAGCTGCCATCAGGGTCAAGGATCACCCCAGTAGACTGCTCTCCATGACGAGCTCAGTCTCTATGGTCATTCAGACTAGTATAGCAATTGCCTGTAATAGTTAGGAAAAGAAGAAGGTGAAGCACTGGGGCAAAGCCCCATTTTGCAGTGGAGATGATCTAGGTGGATGAGTGCTTCCTTCCGTGGTATACATGGTATGTTTCAGGGAATAGTTGTAAAGGCTAATGCCTAATGGCAAACAAAATTTGGGCAAAACCCCACTATGATATGAAGAGCAATGTTCTGTATCCCCTATGATTGTTCAGCTGGACATGTTTCTTTCTTATGTACATGTCTTGT]
[+] EMBL CB639668             [                                                                                                                                                                                           GCCGTGGCGTCGGGGGACACGCTCGCCGATCTCGGCGGCGCCGCCAAGGGGATCGACAGCGTGCCAGAAGTGAATAACTTGGGACCATGGGCGAAGGGGCTTCTGAAAGGGATGCCGGACTCGGCGGCAGGGCCAGCAGAGGGCCCCATCGCAAAGTATCCGCTGGTTCTGGCAGAGGAGAGGACGCGGCGGCCGGATGTTCTTGACCACCTTANGATGTATGGAGGAGGGTGGAACATCACTAACAAGCACTATTGGGCGTCTGTTTCATTCACAGGAATTGCTGGGTTTGTTCTTGCTGCTGGGTGGTTTATTTCGTTTGGAATTGCTGTAGCTGCAAGCTGCTTTTGGAAATCAAGAATAGACAAAGAAAATGATTTTCATGCAGATATACTGCGCCTTGTGTTGCTTGTGGTCTTCATATTTACTTTAACGGCTGGATCTGTTATCCTCTTTTGTGGACAGAGTAAAATCGGACAAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]


>consensus_1749#0 GACGCCGCGGGCTTAGTCCAGTGGAAGGTGTTCGTCCACTCGCGCTCGCACTCCCGCCGT TACGCGCGCGCGCGCCGCCGCCGCCCCGACCTCGCCGCGCGCGCCGACGAACCTAGATGC GGTGATGGGAAGAAGGGGCGCGGGCGCGGGCGCTGCGGTGGTGGTGGTCGCGGCCTTCGT GGCGGCGGCCGTGGCGTCGGGGGACACGCTCGCCGATCTCGGCGGCGCCGCCAAGGGGAT CGACAGCGTGCCAGAAGTGAATAACTTGGGACCATGGGCGAAGGGGCTTCTGAAAGGGAT GCCGGACTCGGCGGCAGGGCCAGCAGAGGGCCCCATCGCAAAGTATCCGCTGGTTCTGGC AGAGGAGAGGACGCGGCGGCCGGATGTTCTTGACCACCTTAGGATGTATGGAGGAGGGTG GAACATCACTAACAAGCACTATTGGGCGTCTGTTTCATTCACAGGAATTGCTGGGTTTGT TCTTGCTGCTGGGTGGTTTATTTCGTTTGGAATTGCTGTAGCTGCAAGCTGCTTTTGGAA ATCAAGAATAGACAAAGAAAATGATTTTCATGCAGATATACTGCGCCTTGTGTTGCTTGT GGTCTTCATATTTACTTTAACGGCTGGATCTGTTATCCTCTTTTGTGGACAGAGTAAATT CGGACAAGAAGCTACTAGCACTGTCGATTTTGTTGTGAATCAATCTGATTTCACCATTCA GACGCTAAGGAATGTTACCGATTACTTATCGCTTGCAAAGACAATCAGTGTGGCAGCACT CTATCTTCCTTCAGATGTACAAGGGCAAATTGACAATTTGAAAGTGGACTTAAATAAAGC GGCTGATACTATATCCCAAAAGACATCAGAAAACTACAGAAGGATAAGAAAAGTTCTCCA TAACTTGTCAGTTGCTTTGATTTGCATAGCTGCGTTGATGCCTGTTCTTGCATTCTTGGG ATATGTTTTGGAGCTGTATGGACAAAGAAGTACAGTTTATGTATTTGTTACCTTATGCTG GACAGTAGTGGCAACTCTCTTCATTCTTCTAGGGATTTTCCTGATATTGAACAGTGCTGC AAAGGATACCTGTGAAGCAATGGATGAATGGGCACAACATCCTCAAGCAGAGACAGCTCT CAGCAACATCCTTCCACGTGTAGATGAAAGCACAACCAATCAAACCTTGTACCAGAGTAA ACATGTTGTGGTAATTCTTGTAGGCATAGTTAATAGGGCTATATCTGCTCTTTCAAATCG AAGGCCACATCATAAACATCCTGGGCAGTTCATGCCTTACCTGTGTTCTCCCTATGATGC GAACCTGACTGATCGGCAGTGCAAGTCTAGGGAGGTCACCTTCGATAATGCAACCACAGC ATGGCTGAACTATACATGCACAGTTCCTGACTCAGATTTGTGCTCTGGCTCCAGAACCAT AACTCCAGAGATATACAGTCAGCTTGTTTTAGCTGCCAATGTAAGCTATGCTCTGTACCA TTATGCCCCTCTCATGCTCAATCTCCAGGACTGCAAGTTCGTCCGCAACACATTCAGCTC CATCGCTTCGCAGTACTGCCCTCCTATATGGCGCGACCTCAGCTTGGTCTCAGCAGGCCT GGCTCTCATTGCCTCTGGCTTAACACTTGGCCTCCTCTTGATGCTTTTTGCGGACCGCCC CCAAAGGGAGGAGGTGTCCGAGCTGCCATCAGGGTCAAGGATCACCCCAGTAGACTGCTC TCCATGACGAGCTCAGTCTCTATGGTCATTCAGACTAGTATAGCAATTGCCTGTAATAGT TAGGAAAAGAAGAAGGTGAAGCACTGGGGCAAAGCCCCATTTTGCAGTGGAGATGATCTA GGTGGATGAGTGCTTCCTTCCGTGGTATACATGGTATGTTTCAGGGAATAGTTGTAAAGG CTAATGCCTAATGGCAAACAAAATTTGGGCAAAACCCCACTATGATATGAAGAGCAATGT TCTGTATCCCCTATGATTGTTCAGCTGGACATGTTTCTTTCTTATGTACATGTCTTGT



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)