cluster # 1758

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Oryza sativa
cluster # 1758 cluster # 1758 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1758#0 length = 619 sequences # 1

consensus_1758#1 length = 582 sequences # 1

consensusID : consensus_1758#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 619
fasta sequence

                              [AACGTAATCGATTTGTCTCATCATCACGACGAANAGCTCGTAAACGTTATTTCAATGCACCATCACACGTTCGTCGTCGTTTAATGAGCGCACCATTAAATAAAGAATTACGACGACGATACAATGTTCGTAGTTTACCAGTTCGTAAAGATGATGAAGTGGCGATTACTCGTGGCCATTTCAAAGGTCAACCATCCGGTAAAATCACACAAGTTTACCAAAAAAAATTCGTCATTCATGTCGAACGAATTACACGTGAAAAAGCCAATGGTAATACTGTTCATATTGGTATCCATCCGTCGAAGGTTCAAATAACCGAATTGAAATTAGATCGTGATCGTAAACGTATTTTGGATCGTCGTTCGAAATCGAAATTGGCTGCGTAAGGCTAACATACCGAAGAAAGGATTCAACAAGCACCAATTGGAAACCTCCTGCTTAATCTTAGAGAAAGAAACAACATACGGAAGGAAAAACATGAAGCAAAATTCTATTCCAAGGTGTTGTGGTTTTCGTTTTGGTTTTGAGATTGCTTGTGGGCATGGGCGGTAAACCAGAGAACGAAAACAAGTCGTTACAGCTNTGGCACCAACGGAATGAGGACAGGAAGGATCAAGTA]

[+] EMBL CA755110             [AACGTAATCGATTTGTCTCATCATCACGACGAANAGCTCGTAAACGTTATTTCAATGCACCATCACACGTTCGTCGTCGTTTAATGAGCGCACCATTAAATAAAGAATTACGACGACGATACAATGTTCGTAGTTTACCAGTTCGTAAAGATGATGAAGTGGCGATTACTCGTGGCCATTTCAAAGGTCAACCATCCGGTAAAATCACACAAGTTTACCAAAAAAAATTCGTCATTCATGTCGAACGAATTACACGTGAAAAAGCCAATGGTAATACTGTTCATATTGGTATCCATCCGTCGAAGGTTCAAATAACCGAATTGAAATTAGATCGTGATCGTAAACGTATTTTGGATCGTCGTTCGAAATCGAAATTGGCTGCGTAAGGCTAACATACCGAAGAAAGGATTCAACAAGCACCAATTGGAAACCTCCTGCTTAATCTTAGAGAAAGAAACAACATACGGAAGGAAAAACATGAAGCAAAATTCTATTCCAAGGTGTTGTGGTTTTCGTTTTGGTTTTGAGATTGCTTGTGGGCATGGGCGGTAAACCAGAGAACGAAAACAAGTCGTTACAGCTNTGGCACCAACGGAATGAGGACAGGAAGGATCAAGTA]




>consensus_1758#0
AACGTAATCGATTTGTCTCATCATCACGACGAANAGCTCGTAAACGTTATTTCAATGCAC
CATCACACGTTCGTCGTCGTTTAATGAGCGCACCATTAAATAAAGAATTACGACGACGAT
ACAATGTTCGTAGTTTACCAGTTCGTAAAGATGATGAAGTGGCGATTACTCGTGGCCATT
TCAAAGGTCAACCATCCGGTAAAATCACACAAGTTTACCAAAAAAAATTCGTCATTCATG
TCGAACGAATTACACGTGAAAAAGCCAATGGTAATACTGTTCATATTGGTATCCATCCGT
CGAAGGTTCAAATAACCGAATTGAAATTAGATCGTGATCGTAAACGTATTTTGGATCGTC
GTTCGAAATCGAAATTGGCTGCGTAAGGCTAACATACCGAAGAAAGGATTCAACAAGCAC
CAATTGGAAACCTCCTGCTTAATCTTAGAGAAAGAAACAACATACGGAAGGAAAAACATG
AAGCAAAATTCTATTCCAAGGTGTTGTGGTTTTCGTTTTGGTTTTGAGATTGCTTGTGGG
CATGGGCGGTAAACCAGAGAACGAAAACAAGTCGTTACAGCTNTGGCACCAACGGAATGA
GGACAGGAAGGATCAAGTA

consensusID : consensus_1758#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 582
fasta sequence

                              [TAGCAACCNCGGCTGCAGGAATGCGGCACGAGCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGCTCTCTCTCTCTCTCTCTCACACAGAAGAAAATGAGACAAAATCGATTTGTCTCATCATCACGTCGAAAAGCTCGTAAACGTTATTTTATGCACCATCGCATATTCGTCGTCGTTTAATGAGCGCACCATTGAATAAAGAACTACGACGACGATACAATGTTCGTAGTTTACCTATTCGAAAAGATGATGAAGTTGCGATCACTCGTGGCCATTTCAGAGGGCAACCATCAGGCAAAATTACACAAGTTTACCGTAAGAAATATGTCATTCATGTTGGACGTATAACACGTGAAAAAGCCAATGGAAATACCGTTCACATTGGTATTCATCCATCGAAGGTGCAAATTACCAAAATCAAATTAGATCGTAATCGTCGTCAAATTCTCGAACGTCGTGCAAAATCGAAACTATTCCGGCAAAGGCAAACATACCGAAGAAAGCATTCAACAAGCACCAATGGAAACTCAGCTTATAAGAAACAAGAACAGCCCCAATGGTATA]

[+] EMBL BE039195             [TAGCAACCNCGGCTGCAGGAATGCGGCACGAGCTCTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGCTCTCTCTCTCTCTCTCTCACACAGAAGAAAATGAGACAAAATCGATTTGTCTCATCATCACGTCGAAAAGCTCGTAAACGTTATTTTATGCACCATCGCATATTCGTCGTCGTTTAATGAGCGCACCATTGAATAAAGAACTACGACGACGATACAATGTTCGTAGTTTACCTATTCGAAAAGATGATGAAGTTGCGATCACTCGTGGCCATTTCAGAGGGCAACCATCAGGCAAAATTACACAAGTTTACCGTAAGAAATATGTCATTCATGTTGGACGTATAACACGTGAAAAAGCCAATGGAAATACCGTTCACATTGGTATTCATCCATCGAAGGTGCAAATTACCAAAATCAAATTAGATCGTAATCGTCGTCAAATTCTCGAACGTCGTGCAAAATCGAAACTATTCCGGCAAAGGCAAACATACCGAAGAAAGCATTCAACAAGCACCAATGGAAACTCAGCTTATAAGAAACAAGAACAGCCCCAATGGTATA]




>consensus_1758#1
TAGCAACCNCGGCTGCAGGAATGCGGCACGAGCTCTCTCTTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTGTGTGTGCTCTCTCTCTCTCTCTCTCACACAGAAGAAAATGAGACAA
AATCGATTTGTCTCATCATCACGTCGAAAAGCTCGTAAACGTTATTTTATGCACCATCGC
ATATTCGTCGTCGTTTAATGAGCGCACCATTGAATAAAGAACTACGACGACGATACAATG
TTCGTAGTTTACCTATTCGAAAAGATGATGAAGTTGCGATCACTCGTGGCCATTTCAGAG
GGCAACCATCAGGCAAAATTACACAAGTTTACCGTAAGAAATATGTCATTCATGTTGGAC
GTATAACACGTGAAAAAGCCAATGGAAATACCGTTCACATTGGTATTCATCCATCGAAGG
TGCAAATTACCAAAATCAAATTAGATCGTAATCGTCGTCAAATTCTCGAACGTCGTGCAA
AATCGAAACTATTCCGGCAAAGGCAAACATACCGAAGAAAGCATTCAACAAGCACCAATG
GAAACTCAGCTTATAAGAAACAAGAACAGCCCCAATGGTATA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1758#0      ------------------------------------------------------------
consensus_1758#1      TAGCAACCNCGGCTGCAGGAATGCGGCACGAGCTCTCTCTTCTCTCTCTCTCTCTCTCTC 60
                                                                                  

consensus_1758#0      -------------------------------------------------------AACGT 5
consensus_1758#1      TCTCTCTCTCTCTGTGTGTGCTCTCTCTCTCTCTCTCTCACACAGAAGAAAATGAGACAA 120
                                                                              **  

consensus_1758#0      AATCGATTTGTCTCATCATCACGACGAANAGCTCGTAAACGTTATTTCAATGCACCATCA 65
consensus_1758#1      AATCGATTTGTCTCATCATCACGTCGAAAAGCTCGTAAACGTTATTTTA-TGCACCATCG 179
                      *********************** **** ****************** * ********* 

consensus_1758#0      CACGTTCGTCGTCGTTTAATGAGCGCACCATTAAATAAAGAATTACGACGACGATACAAT 125
consensus_1758#1      CATATTCGTCGTCGTTTAATGAGCGCACCATTGAATAAAGAACTACGACGACGATACAAT 239
                      **  **************************** ********* *****************

consensus_1758#0      GTTCGTAGTTTACCAGTTCGTAAAGATGATGAAGTGGCGATTACTCGTGGCCATTTCAAA 185
consensus_1758#1      GTTCGTAGTTTACCTATTCGAAAAGATGATGAAGTTGCGATCACTCGTGGCCATTTCAGA 299
                      **************  **** ************** ***** **************** *

consensus_1758#0      GGTCAACCATCCGGTAAAATCACACAAGTTTACCAAAAAAAATTCGTCATTCATGTCGAA 245
consensus_1758#1      GGGCAACCATCAGGCAAAATTACACAAGTTTACCGTAAGAAATATGTCATTCATGTTGGA 359
                      ** ******** ** ***** *************  ** ****  *********** * *

consensus_1758#0      CGAATTACACGTGAAAAAGCCAATGGTAATACTGTTCATATTGGTATCCATCCGTCGAAG 305
consensus_1758#1      CGTATAACACGTGAAAAAGCCAATGGAAATACCGTTCACATTGGTATTCATCCATCGAAG 419
                      ** ** ******************** ***** ***** ******** ***** ******

consensus_1758#0      GTTCAAATAACCGAATTGAAATTAGATCGTGATCGTAAACGTATTTTGGATCGTCGTTCG 365
consensus_1758#1      GTGCAAATTACCAAAATCAAATTAGATCGTAATCGTCGTCAAATTCTCGAACGTCGTGCA 479
                      ** ***** *** ** * ************ *****   *  *** * ** ****** * 

consensus_1758#0      AAATCGAAATTGGCTGCGTAA-GGCTAACATACCGAAGAAAGGATTCAACAAGCACCAAT 424
consensus_1758#1      AAATCGAAACTATTCCGGCAAAGGCAAACATACCGAAGAAAGCATTCAACAAGCACCAAT 539
                      ********* *      * ** *** **************** *****************

consensus_1758#0      TGGAAACCTCCTGCTTAATCTTAGAGAAAGAAACAACATACGGAAGGAAAAACATGAAGC 484
consensus_1758#1      -GGAAACT--CAGCTTA---TAAGAAACAAGAACAGCC--CCAATGGTATA--------- 582
                       ******   * *****   * *** * *  **** *   *  * ** * *         

consensus_1758#0      AAAATTCTATTCCAAGGTGTTGTGGTTTTCGTTTTGGTTTTGAGATTGCTTGTGGGCATG 544
consensus_1758#1      ------------------------------------------------------------
                                                                                  

consensus_1758#0      GGCGGTAAACCAGAGAACGAAAACAAGTCGTTACAGCTNTGGCACCAACGGAATGAGGAC 604
consensus_1758#1      ------------------------------------------------------------
                                                                                  

consensus_1758#0      AGGAAGGATCAAGTA 619
consensus_1758#1      ---------------