These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_176#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 692 fasta sequence [TTTTGATAAATATTTTCTTGCACTTCTATGTGCAAAGTGCAAAGAGCAGTGCATAGTCAAAGTCTTGCACTGCGAATGTCTAAAATGCATACATGACTCATGACCAAGCAGGCCATTATATGTTACTGCAACATAAAAGATGCTACGGCAATCTAAGAACTGTGCTACAAAAACCACCATATAAAAACTAAATAAATTGAAATTTACATCTTTCATGTACATATACATAATTTTGCGTAGCTTAACAATTGAGACATGCTGCATATTTATATTGCTTCACTGAAGAACACAGAGATATCACTATGATATCTGGACTCAATACCAATTCCTGGACTGCAAGTGGTAATATGAGAACACAGAGATATCACTGTAATATGATGTTGAACACCACCTACAACAAAAGGAAGCAATCCATGACAATTGGTCAACTAAGACAATGTCCACAATAGAAGGTCAAGACCACATAACACATCANAATAAAAGATTGGATTTGATGCAGGTTAGTATAAAGTAAAATGAGTTAACTAAAAAGTTCTCATATAAACCACAAATAATGAGTCAAAACAGTTGTGTACTAATTATTCTAGTACCAACTCAAGGGGCAGCAAAAAACCACATTCTGCCCATCANATACTACCAAACTATTGATAATCCCATACTGANAAATGAAACTATTCCTCAGTTAATCGGTC] [+] EMBL CA761267 [TTTTGATAAATATTTTCTTGCACTTCTATGTGCAAAGTGCAAAGAGCAGTGCATAGTCAAAGTCTTGCACTGCGAATGTCTAAAATGCATACATGACTCATGACCAAGCAGGCCATTATATGTTACTGCAACATAAAAGATGCTACGGCAATCTAAGAACTGTGCTACAAAAACCACCATATAAAAACTAAATAAATTGAAATTTACATCTTTCATGTACATATACATAATTTTGCGTAGCTTAACAATTGAGACATGCTGCATATTTATATTGCTTCACTGAAGAACACAGAGATATCACTATGATATCTGGACTCAATACCAATTCCTGGACTGCAAGTGGTAATATGAGAACACAGAGATATCACTGTAATATGATGTTGAACACCACCTACAACAAAAGGAAGCAATCCATGACAATTGGTCAACTAAGACAATGTCCACAATAGAAGGTCAAGACCACATAACACATCANAATAAAAGATTGGATTTGATGCAGGTTAGTATAAAGTAAAATGAGTTAACTAAAAAGTTCTCATATAAACCACAAATAATGAGTCAAAACAGTTGTGTACTAATTATTCTAGTACCAACTCAAGGGGCAGCAAAAAACCACATTCTGCCCATCANATACTACCAAACTATTGATAATCCCATACTGANAAATGAAACTATTCCTCAGTTAATCGGTC] consensusID : consensus_176#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence [TTTTTTTTTTAAGAGCAGTGCATAGTCAAAATCTTGCACTGCGAATGTCTAAAATGCATACATGACTCATGACCAAGCAGGCCATTATATGTTACTGCAACATAAAAGATGCTACGGCAATCTAAGAACTGTGCTACAAAAACCACCATATAAAAACTAAATAAATTGAAATTTACATCTTTCATGTACATATACATAATTTTGCGTAGCTTAACAATTGAGACATGCTGCATATTTATATTGCTTCACTGAAGAACACAGAGATATCACTATGATATCTGGACTCAATACCAATCCCTGGACTGCAAGTGGTAATATGAGAACACAGAGATATCACCGTAATATGATGTTGAACACCACCTACAACAAAAGGGAGCAATCCATGACAATTGGTCAACTAAGACAATGTCCACAATAGAAGGTCAAGACCACATAACACATCATAATAAAAGATTGGATTTGATGCAGGTTAGTATAAAGTAAAATGAGTTAACTAAAAAGTTCTCATATAAACCACAAATAATGAGTCAAAACAGTTGTGTACTAATTATTCTAGTACCAACTCAGGGGGCTGCAAAAAACCACATTCTGCCCATCAAATACTACCAAACTATTGATAATCCAATACTGAAAAAATGAAACCCCCCTTGTCTCCGCAACCTAATCCAAGCTTATC] [+] EMBL CA760876 [TTTTTTTTTTAAGAGCAGTGCATAGTCAAAATCTTGCACTGCGAATGTCTAAAATGCATACATGACTCATGACCAAGCAGGCCATTATATGTTACTGCAACATAAAAGATGCTACGGCAATCTAAGAACTGTGCTACAAAAACCACCATATAAAAACTAAATAAATTGAAATTTACATCTTTCATGTACATATACATAATTTTGCGTAGCTTAACAATTGAGACATGCTGCATATTTATATTGCTTCACTGAAGAACACAGAGATATCACTATGATATCTGGACTCAATACCAATCCCTGGACTGCAAGTGGTAATATGAGAACACAGAGATATCACCGTAATATGATGTTGAACACCACCTACAACAAAAGGGAGCAATCCATGACAATTGGTCAACTAAGACAATGTCCACAATAGAAGGTCAAGACCACATAACACATCATAATAAAAGATTGGATTTGATGCAGGTTAGTATAAAGTAAAATGAGTTAACTAAAAAGTTCTCATATAAACCACAAATAATGAGTCAAAACAGTTGTGTACTAATTATTCTAGTACCAACTCAGGGGGCTGCAAAAAACCACATTCTGCCCATCAAATACTACCAAACTATTGATAATCCAATACTGAAAAAATGAAACCCCCCTTGTCTCCGCAACCTAATCCAAGCTTATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_176#0 TTTTGATAAATATTTTCTTGCACTTCTATGTGCAAAGTGCAAAGAGCAGTGCATAGTCAA 60 consensus_176#1 -------------------------------TTTTTTTTTTAAGAGCAGTGCATAGTCAA 29 * ******************* consensus_176#0 AGTCTTGCACTGCGAATGTCTAAAATGCATACATGACTCATGACCAAGCAGGCCATTATA 120 consensus_176#1 AATCTTGCACTGCGAATGTCTAAAATGCATACATGACTCATGACCAAGCAGGCCATTATA 89 * ********************************************************** consensus_176#0 TGTTACTGCAACATAAAAGATGCTACGGCAATCTAAGAACTGTGCTACAAAAACCACCAT 180 consensus_176#1 TGTTACTGCAACATAAAAGATGCTACGGCAATCTAAGAACTGTGCTACAAAAACCACCAT 149 ************************************************************ consensus_176#0 ATAAAAACTAAATAAATTGAAATTTACATCTTTCATGTACATATACATAATTTTGCGTAG 240 consensus_176#1 ATAAAAACTAAATAAATTGAAATTTACATCTTTCATGTACATATACATAATTTTGCGTAG 209 ************************************************************ consensus_176#0 CTTAACAATTGAGACATGCTGCATATTTATATTGCTTCACTGAAGAACACAGAGATATCA 300 consensus_176#1 CTTAACAATTGAGACATGCTGCATATTTATATTGCTTCACTGAAGAACACAGAGATATCA 269 ************************************************************ consensus_176#0 CTATGATATCTGGACTCAATACCAATTCCTGGACTGCAAGTGGTAATATGAGAACACAGA 360 consensus_176#1 CTATGATATCTGGACTCAATACCAATCCCTGGACTGCAAGTGGTAATATGAGAACACAGA 329 ************************** ********************************* consensus_176#0 GATATCACTGTAATATGATGTTGAACACCACCTACAACAAAAGGAAGCAATCCATGACAA 420 consensus_176#1 GATATCACCGTAATATGATGTTGAACACCACCTACAACAAAAGGGAGCAATCCATGACAA 389 ******** *********************************** *************** consensus_176#0 TTGGTCAACTAAGACAATGTCCACAATAGAAGGTCAAGACCACATAACACATCANAATAA 480 consensus_176#1 TTGGTCAACTAAGACAATGTCCACAATAGAAGGTCAAGACCACATAACACATCATAATAA 449 ****************************************************** ***** consensus_176#0 AAGATTGGATTTGATGCAGGTTAGTATAAAGTAAAATGAGTTAACTAAAAAGTTCTCATA 540 consensus_176#1 AAGATTGGATTTGATGCAGGTTAGTATAAAGTAAAATGAGTTAACTAAAAAGTTCTCATA 509 ************************************************************ consensus_176#0 TAAACCACAAATAATGAGTCAAAACAGTTGTGTACTAATTATTCTAGTACCAACTCAAGG 600 consensus_176#1 TAAACCACAAATAATGAGTCAAAACAGTTGTGTACTAATTATTCTAGTACCAACTCAGGG 569 ********************************************************* ** consensus_176#0 GGCAGCAAAAAACCACATTCTGCCCATCANATACTACCAAACTATTGATAATCCCATACT 660 consensus_176#1 GGCTGCAAAAAACCACATTCTGCCCATCAAATACTACCAAACTATTGATAATCCAATACT 629 *** ************************* ************************ ***** consensus_176#0 GANAAA-TGAAACTATTC----CTCAGTTAATCGGTC---------- 692 consensus_176#1 GAAAAAATGAAACCCCCCTTGTCTCCGCAACCTAATCCAAGCTTATC 676 ** *** ****** * *** * * ** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||