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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1762#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1574 fasta sequence
[TAGGCTGCAGCAACCGAATCCTGTGAATCTGTGATCCCAGTTAGTTTATGCAATCAATGTTTTCTGGTTGGAATTTGTTCTTCTAGTCTAGTTGCAGCATGATCACCAGAGTACAAAACGGATCACTGCGAGGCGAGATGATCGATCTTGATCTTGTTCTTGTTTGATCTCATCTCATGGCGGATTAATTCTTGCTATCTGAGGCGGGAGTCGTCCTTGTGGCGGGTGACGAGCTTGGCGGTGTTGCGCCACCAGCAAACCTCGCGCTCCTTCTCCTGCAGCCTCTTCCTGGCGCGCTCCAGCGCCGTCTCCAGCTCCGCGATCCGCTCCTCGTGCCGCCACTGGAGCAGCTCGTGCAGCCTCCTCTCCAGCTCCCTCGCCGACACGCCGCCCTGCGCCGCCGCCCCGCTCTCCTCCTCCTCCTCCTCCTCGTCGTCAGCACCGTCCGTGTCATCGTCGGCGTCGGCGAAGGTGGCCGCGTGGGTGTCCGTGGACTCCTCCTCGTCGTCGCCGATCTGCGAAGATGGATTGGAGGAAATAAATGTTAGAAAATGGCGGCGAAATTGATCCGAATCGGTGGGCTTCTAGCTGTTCGACCTCGAGTTGACGATCCCGACGAGGAGTCGCGCATTGCAGGAGCGTCAGCTCCGCCTCGAGCTCCGCTTCCATCTGGTCCATTGGAACGGCGGCGTGGTGCCCTGCGTTTCCCGGGGCGGCGGCCGTGCGTGAGCAGCGGGATAATGCGCCGCCGGAGAAGGCGGTGGGCTCCTCCTTGGTGATGTCGGCGTGATCGTCGGACGCGTTGGGGTGGTTGCTGCTCCGCGCCTCCTCCTCCCCCTTGGTGTCGAGCACCAGCCGCTCCATCTGGGCGCGGAGCTCCGCCATCCTGTTCAGCTCCGCCGCGCTCTTGGAGAGCAGCAGCATGAGGCTCGCGCCCAGCCCCAGGCTCGCCGGCGACACCTCCTCCGCCGCCTTCTTCCCTGCACACGACGGACAACCAAATCAATCGAACCAGACCACGCCATCCGATCACTCGCTCTCGCCATGGACACGTACCGAGCGAGCTCCGAGGCGACTCGCGATCAACCGCTTGGCGGCCCACCACCTTCGGCGCCGCAGCCTCCGCCTCAACCTCAACCTCCACGTACTCGGCGGCGGCGTCCTCCTTGGCGGCCGCGCCGCTGGAGCAGTATCGGGGGAGGCGAAGGCGACACCCGAAGCCGCCGCCGCCGCCACTCCTATGGAGGATGCGCGACAGCAGCGACCGCGGCGAGGGGATCTCGCGTGCGGGAGCGGCAGCCACCGAGGCCTTCGAGAGGAGCGCACCGACGGTGGAGGGCGACGCCGCCGCCGACGACGAGGCCGAGACGCGCGGCGCCGCGTTTCTCTCCATCGCCATGGGCGTCGCGAGCTCGATCGCGAGGGGGAATTACGATTTACGAGGAATATTGCAAAGGTTTTGGAGGTTTTTGCGCCTGAATTCGATGGGGGCGTATCGTGTCGGCGTGCGTAATTTATAAGGCGGGGGTTTCGAGCCGGACTGGTCGCCTCTGGAATTCAAAATTTGGAGAAAT]
[+] EMBL AK106456 [TAGGCTGCAGCAACCGAATCCTGTGAATCTGTGATCCCAGTTAGTTTATGCAATCAATGTTTTCTGGTTGGAATTTGTTCTTCTAGTCTAGTTGCAGCATGATCACCAGAGTACAAAACGGATCACTGCGAGGCGAGATGATCGATCTTGATCTTGTTCTTGTTTGATCTCATCTCATGGCGGATTAATTCTTGCTATCTGAGGCGGGAGTCGTCCTTGTGGCGGGTGACGAGCTTGGCGGTGTTGCGCCACCAGCAAACCTCGCGCTCCTTCTCCTGCAGCCTCTTCCTGGCGCGCTCCAGCGCCGTCTCCAGCTCCGCGATCCGCTCCTCGTGCCGCCACTGGAGCAGCTCGTGCAGCCTCCTCTCCAGCTCCCTCGCCGACACGCCGCCCTGCGCCGCCGCCCCGCTCTCCTCCTCCTCCTCCTCCTCGTCGTCAGCACCGTCCGTGTCATCGTCGGCGTCGGCGAAGGTGGCCGCGTGGGTGTCCGTGGACTCCTCCTCGTCGTCGCCGATCTGCGAAGATGGATTGGAGGAAATAAATGTTAGAAAATGGCGGCGAAATTGATCCGAATCGGTGGGCTTCTAGCTGTTCGACCTCGAGTTGACGATCCCGACGAGGAGTCGCGCATTGCAGGAGCGTCAGCTCCGCCTCGAGCTCCGCTTCCATCTGGTCCATTGGAACGGCGGCGTGGTGCCCTGCGTTTCCCGGGGCGGCGGCCGTGCGTGAGCAGCGGGATAATGCGCCGCCGGAGAAGGCGGTGGGCTCCTCCTTGGTGATGTCGGCGTGATCGTCGGACGCGTTGGGGTGGTTGCTGCTCCGCGCCTCCTCCTCCCCCTTGGTGTCGAGCACCAGCCGCTCCATCTGGGCGCGGAGCTCCGCCATCCTGTTCAGCTCCGCCGCGCTCTTGGAGAGCAGCAGCATGAGGCTCGCGCCCAGCCCCAGGCTCGCCGGCGACACCTCCTCCGCCGCCTTCTTCCCTGCACACGACGGACAACCAAATCAATCGAACCAGACCACGCCATCCGATCACTCGCTCTCGCCATGGACACGTACCGAGCGAGCTCCGAGGCGACTCGCGATCAACCGCTTGGCGGCCCACCACCTTCGGCGCCGCAGCCTCCGCCTCAACCTCAACCTCCACGTACTCGGCGGCGGCGTCCTCCTTGGCGGCCGCGCCGCTGGAGCAGTATCGGGGGAGGCGAAGGCGACACCCGAAGCCGCCGCCGCCGCCACTCCTATGGAGGATGCGCGACAGCAGCGACCGCGGCGAGGGGATCTCGCGTGCGGGAGCGGCAGCCACCGAGGCCTTCGAGAGGAGCGCACCGACGGTGGAGGGCGACGCCGCCGCCGACGACGAGGCCGAGACGCGCGGCGCCGCGTTTCTCTCCATCGCCATGGGCGTCGCGAGCTCGATCGCGAGGGGGAATTACGATTTACGAGGAATATTGCAAAGGTTTTGGAGGTTTTTGCGCCTGAATTCGATGGGGGCGTATCGTGTCGGCGTGCGTAATTTATAAGGCGGGGGTTTCGAGCCGGACTGGTCGCCTCTGGAATTCAAAATTTGGAGAAAT]
consensusID : consensus_1762#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1290 fasta sequence
[TGTGATCCCAGTTAGTTTATGCAATCAATGTTTTCTGGTTGGAATTTGTTCTTCTAGTCTAGTTGCAGCATGATCACCAGAGTACAAAACGGATCACTGCGAGGCGAGATGATCGATCTTGATCTTGTTCTTGTTTGATCTCATCTCATGGCGGATTAATTCTTGCTATCTGAGGCGGGAGTCGTCCTTGTGGCGGGTGACGAGCTTGGCGGTGTTGCGCCACCAGCAAACCTCGCGCTCCTTCTCCTGCAGCCTCTTCCTGGCGCGCTCCAGCGCCGTCTCCAGCTCCGCGATCCGCTCCTCGTGCCGCCACTGGAGCAGCTCGTGCAGCCTCCTCTCCAGCTCCCTCGCCGACACGCCGCCCTGCGCCGCCGCCCCGCTCTCCTCCTCCTCCTCCTCCTCGTCGTCAGCACCGTCCGTGTCATCGTCGGCGTCGGCGAAGGTGGCCGCGTGGGTGTCCGTGGACTCCTCCTCGTCGTCGCCGATCTCGAGTTGACGATCCCGACGAGGAGTCGCGCATTGCAGGAGCGTCAGCTCCGCCTCGAGCTCCGCTTCCATCTGGTCCATTGGAACGGCGGCGTGGTGCCCTGCGTTTCCCGGGGCGGCGGCCGTGCGTGAGCAGCGGGATAATGCGCCGCCGGAGAAGGCGGTGGGCTCCTCCTTGGTGATGTCGGCGTGATCGTCGGACGCGTTGGGGTGGTTGCTGCTCCGCGCCTCCTCCTCCCCCTTGGTGTCGAGCACCAGCCGCTCCATCTGGGCGCGGAGCTCCGCCATCCTGTTCAGCTCCGCCGCGCTCTTGGAGAGCAGCAGCATGAGGCTCGCGCCCAGCCCCAGGCTCGCCGGCGACACCTCCTCCGCCGCCTTCTTCCCGAGCGAGCTCCGAGGCGACTCGCGATCAACCGCTTGGCGGCCCACCACCTTCGGCGCCGCAGCCTCCGCCTCAACCTCAACCTCCACGTACTCGGCGGCGGCGTCCTCCTTGGCGGCCGCGCCGCTGGAGCAGTATCGGGGGAGGCGAAGGCGACACCCGAAGCCGCCGCCGCCGCCACTCCTATGGAGGATGCGCGACAGCAGCGACCGCGGCGAGGGGATCTCGCGTGCGGGAGCGGCAGCCACCGAGGCCTTCGAGAGGAGCGCACCGACGGTGGAGGGCGACGCCGCCGCCGACGACGAGGCCGAGACGCGCGGCGCCGCGTTTCTCTCCATCGCCATGGGCGTCGCGAGCTCGATCGCGAGGGGGAATTACGATTTACGAGGAATATTGCAAAGGTTTTGGAGGTTTTTGCGCCT]
[-] EMBL AK059349 [TGTGATCCCAGTTAGTTTATGCAATCAATGTTTTCTGGTTGGAATTTGTTCTTCTAGTCTAGTTGCAGCATGATCACCAGAGTACAAAACGGATCACTGCGAGGCGAGATGATCGATCTTGATCTTGTTCTTGTTTGATCTCATCTCATGGCGGATTAATTCTTGCTATCTGAGGCGGGAGTCGTCCTTGTGGCGGGTGACGAGCTTGGCGGTGTTGCGCCACCAGCAAACCTCGCGCTCCTTCTCCTGCAGCCTCTTCCTGGCGCGCTCCAGCGCCGTCTCCAGCTCCGCGATCCGCTCCTCGTGCCGCCACTGGAGCAGCTCGTGCAGCCTCCTCTCCAGCTCCCTCGCCGACACGCCGCCCTGCGCCGCCGCCCCGCTCTCCTCCTCCTCCTCCTCCTCGTCGTCAGCACCGTCCGTGTCATCGTCGGCGTCGGCGAAGGTGGCCGCGTGGGTGTCCGTGGACTCCTCCTCGTCGTCGCCGATCTCGAGTTGACGATCCCGACGAGGAGTCGCGCATTGCAGGAGCGTCAGCTCCGCCTCGAGCTCCGCTTCCATCTGGTCCATTGGAACGGCGGCGTGGTGCCCTGCGTTTCCCGGGGCGGCGGCCGTGCGTGAGCAGCGGGATAATGCGCCGCCGGAGAAGGCGGTGGGCTCCTCCTTGGTGATGTCGGCGTGATCGTCGGACGCGTTGGGGTGGTTGCTGCTCCGCGCCTCCTCCTCCCCCTTGGTGTCGAGCACCAGCCGCTCCATCTGGGCGCGGAGCTCCGCCATCCTGTTCAGCTCCGCCGCGCTCTTGGAGAGCAGCAGCATGAGGCTCGCGCCCAGCCCCAGGCTCGCCGGCGACACCTCCTCCGCCGCCTTCTTCCCGAGCGAGCTCCGAGGCGACTCGCGATCAACCGCTTGGCGGCCCACCACCTTCGGCGCCGCAGCCTCCGCCTCAACCTCAACCTCCACGTACTCGGCGGCGGCGTCCTCCTTGGCGGCCGCGCCGCTGGAGCAGTATCGGGGGAGGCGAAGGCGACACCCGAAGCCGCCGCCGCCGCCACTCCTATGGAGGATGCGCGACAGCAGCGACCGCGGCGAGGGGATCTCGCGTGCGGGAGCGGCAGCCACCGAGGCCTTCGAGAGGAGCGCACCGACGGTGGAGGGCGACGCCGCCGCCGACGACGAGGCCGAGACGCGCGGCGCCGCGTTTCTCTCCATCGCCATGGGCGTCGCGAGCTCGATCGCGAGGGGGAATTACGATTTACGAGGAATATTGCAAAGGTTTTGGAGGTTTTTGCGCCT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1762#0 TAGGCTGCAGCAACCGAATCCTGTGAATCTGTGATCCCAGTTAGTTTATGCAATCAATGT 60
consensus_1762#1 -----------------------------TGTGATCCCAGTTAGTTTATGCAATCAATGT 31
*******************************
consensus_1762#0 TTTCTGGTTGGAATTTGTTCTTCTAGTCTAGTTGCAGCATGATCACCAGAGTACAAAACG 120
consensus_1762#1 TTTCTGGTTGGAATTTGTTCTTCTAGTCTAGTTGCAGCATGATCACCAGAGTACAAAACG 91
************************************************************
consensus_1762#0 GATCACTGCGAGGCGAGATGATCGATCTTGATCTTGTTCTTGTTTGATCTCATCTCATGG 180
consensus_1762#1 GATCACTGCGAGGCGAGATGATCGATCTTGATCTTGTTCTTGTTTGATCTCATCTCATGG 151
************************************************************
consensus_1762#0 CGGATTAATTCTTGCTATCTGAGGCGGGAGTCGTCCTTGTGGCGGGTGACGAGCTTGGCG 240
consensus_1762#1 CGGATTAATTCTTGCTATCTGAGGCGGGAGTCGTCCTTGTGGCGGGTGACGAGCTTGGCG 211
************************************************************
consensus_1762#0 GTGTTGCGCCACCAGCAAACCTCGCGCTCCTTCTCCTGCAGCCTCTTCCTGGCGCGCTCC 300
consensus_1762#1 GTGTTGCGCCACCAGCAAACCTCGCGCTCCTTCTCCTGCAGCCTCTTCCTGGCGCGCTCC 271
************************************************************
consensus_1762#0 AGCGCCGTCTCCAGCTCCGCGATCCGCTCCTCGTGCCGCCACTGGAGCAGCTCGTGCAGC 360
consensus_1762#1 AGCGCCGTCTCCAGCTCCGCGATCCGCTCCTCGTGCCGCCACTGGAGCAGCTCGTGCAGC 331
************************************************************
consensus_1762#0 CTCCTCTCCAGCTCCCTCGCCGACACGCCGCCCTGCGCCGCCGCCCCGCTCTCCTCCTCC 420
consensus_1762#1 CTCCTCTCCAGCTCCCTCGCCGACACGCCGCCCTGCGCCGCCGCCCCGCTCTCCTCCTCC 391
************************************************************
consensus_1762#0 TCCTCCTCCTCGTCGTCAGCACCGTCCGTGTCATCGTCGGCGTCGGCGAAGGTGGCCGCG 480
consensus_1762#1 TCCTCCTCCTCGTCGTCAGCACCGTCCGTGTCATCGTCGGCGTCGGCGAAGGTGGCCGCG 451
************************************************************
consensus_1762#0 TGGGTGTCCGTGGACTCCTCCTCGTCGTCGCCGATCTGCGAAGATGGATTGGAGGAAATA 540
consensus_1762#1 TGGGTGTCCGTGGACTCCTCCTCGTCGTCGCCGATCT----------------------- 488
*************************************
consensus_1762#0 AATGTTAGAAAATGGCGGCGAAATTGATCCGAATCGGTGGGCTTCTAGCTGTTCGACCTC 600
consensus_1762#1 -----------------------------------------------------------C 489
*
consensus_1762#0 GAGTTGACGATCCCGACGAGGAGTCGCGCATTGCAGGAGCGTCAGCTCCGCCTCGAGCTC 660
consensus_1762#1 GAGTTGACGATCCCGACGAGGAGTCGCGCATTGCAGGAGCGTCAGCTCCGCCTCGAGCTC 549
************************************************************
consensus_1762#0 CGCTTCCATCTGGTCCATTGGAACGGCGGCGTGGTGCCCTGCGTTTCCCGGGGCGGCGGC 720
consensus_1762#1 CGCTTCCATCTGGTCCATTGGAACGGCGGCGTGGTGCCCTGCGTTTCCCGGGGCGGCGGC 609
************************************************************
consensus_1762#0 CGTGCGTGAGCAGCGGGATAATGCGCCGCCGGAGAAGGCGGTGGGCTCCTCCTTGGTGAT 780
consensus_1762#1 CGTGCGTGAGCAGCGGGATAATGCGCCGCCGGAGAAGGCGGTGGGCTCCTCCTTGGTGAT 669
************************************************************
consensus_1762#0 GTCGGCGTGATCGTCGGACGCGTTGGGGTGGTTGCTGCTCCGCGCCTCCTCCTCCCCCTT 840
consensus_1762#1 GTCGGCGTGATCGTCGGACGCGTTGGGGTGGTTGCTGCTCCGCGCCTCCTCCTCCCCCTT 729
************************************************************
consensus_1762#0 GGTGTCGAGCACCAGCCGCTCCATCTGGGCGCGGAGCTCCGCCATCCTGTTCAGCTCCGC 900
consensus_1762#1 GGTGTCGAGCACCAGCCGCTCCATCTGGGCGCGGAGCTCCGCCATCCTGTTCAGCTCCGC 789
************************************************************
consensus_1762#0 CGCGCTCTTGGAGAGCAGCAGCATGAGGCTCGCGCCCAGCCCCAGGCTCGCCGGCGACAC 960
consensus_1762#1 CGCGCTCTTGGAGAGCAGCAGCATGAGGCTCGCGCCCAGCCCCAGGCTCGCCGGCGACAC 849
************************************************************
consensus_1762#0 CTCCTCCGCCGCCTTCTTCCCTGCACACGACGGACAACCAAATCAATCGAACCAGACCAC 1020
consensus_1762#1 CTCCTCCGCCGCCTTCTTCCC--------------------------------------- 870
*********************
consensus_1762#0 GCCATCCGATCACTCGCTCTCGCCATGGACACGTACCGAGCGAGCTCCGAGGCGACTCGC 1080
consensus_1762#1 -------------------------------------GAGCGAGCTCCGAGGCGACTCGC 893
***********************
consensus_1762#0 GATCAACCGCTTGGCGGCCCACCACCTTCGGCGCCGCAGCCTCCGCCTCAACCTCAACCT 1140
consensus_1762#1 GATCAACCGCTTGGCGGCCCACCACCTTCGGCGCCGCAGCCTCCGCCTCAACCTCAACCT 953
************************************************************
consensus_1762#0 CCACGTACTCGGCGGCGGCGTCCTCCTTGGCGGCCGCGCCGCTGGAGCAGTATCGGGGGA 1200
consensus_1762#1 CCACGTACTCGGCGGCGGCGTCCTCCTTGGCGGCCGCGCCGCTGGAGCAGTATCGGGGGA 1013
************************************************************
consensus_1762#0 GGCGAAGGCGACACCCGAAGCCGCCGCCGCCGCCACTCCTATGGAGGATGCGCGACAGCA 1260
consensus_1762#1 GGCGAAGGCGACACCCGAAGCCGCCGCCGCCGCCACTCCTATGGAGGATGCGCGACAGCA 1073
************************************************************
consensus_1762#0 GCGACCGCGGCGAGGGGATCTCGCGTGCGGGAGCGGCAGCCACCGAGGCCTTCGAGAGGA 1320
consensus_1762#1 GCGACCGCGGCGAGGGGATCTCGCGTGCGGGAGCGGCAGCCACCGAGGCCTTCGAGAGGA 1133
************************************************************
consensus_1762#0 GCGCACCGACGGTGGAGGGCGACGCCGCCGCCGACGACGAGGCCGAGACGCGCGGCGCCG 1380
consensus_1762#1 GCGCACCGACGGTGGAGGGCGACGCCGCCGCCGACGACGAGGCCGAGACGCGCGGCGCCG 1193
************************************************************
consensus_1762#0 CGTTTCTCTCCATCGCCATGGGCGTCGCGAGCTCGATCGCGAGGGGGAATTACGATTTAC 1440
consensus_1762#1 CGTTTCTCTCCATCGCCATGGGCGTCGCGAGCTCGATCGCGAGGGGGAATTACGATTTAC 1253
************************************************************
consensus_1762#0 GAGGAATATTGCAAAGGTTTTGGAGGTTTTTGCGCCTGAATTCGATGGGGGCGTATCGTG 1500
consensus_1762#1 GAGGAATATTGCAAAGGTTTTGGAGGTTTTTGCGCCT----------------------- 1290
*************************************
consensus_1762#0 TCGGCGTGCGTAATTTATAAGGCGGGGGTTTCGAGCCGGACTGGTCGCCTCTGGAATTCA 1560
consensus_1762#1 ------------------------------------------------------------
consensus_1762#0 AAATTTGGAGAAAT 1574
consensus_1762#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||