cluster # 1769

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Oryza sativa
cluster # 1769 cluster # 1769 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1769#0 length = 1685 sequences # 1

consensus_1769#1 length = 608 sequences # 1

consensusID : consensus_1769#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1685
fasta sequence

                              [CCCGCGAGGGTTTAAGGGGGCCGGAAAGACGGCGCGGCAGCCTGAGTCGCAGGAATGGCCGCTCGCTCGCTGTAGGGTTTTTCGCCGCTCGCCGCCTCCGCCTCCGCCGCCGCGTGCCCGCGTCCACGCCCGAATCGAATCAGCCGCCGCCGCCGCAAACTCGCCGAGCAGCAGCTGAGCCTAGCACCGCGCCGCGCCGCGCTGCGCCTCGCCTGGCGGCGGATGGCCGCAAGCTAAACCCCCCCGACTCCGCGCGCTCCCCGTGCTGCCCATGGCGGCGGTTCGGAAGATGGCGGCCAATGGCCTCGCAGCAAAAAGGGAGAATACAGGGACAAAGAAATCTCCCCTGCAAATCCAGATGCTGGAGAGATTCTACTCTGAGGTACAATACCCTCAGTCGGAGGACATTGCAGAGTATGCAACATCTGTTGGTTTGACTTACAATCAGGTCAGAATATGGTTTAAGGAGCGGAGGAGGAAAGAGAGGAGAGAAACGGAATCTTTAGGGGCGCATATGGAAAAGCAACTTAGTGCAAGATCAAATGGGTTCAGATGCAGCAGCAGCAGGAGAGAAACACACACTCCGATCACAAGTTCTGTTTCCCAAGGATTATATCCTGAGGAAAGTCTTCCGCAAGGATGGTCCACCTCTTGGAAGCGAATTTGATCCCCTTCCCCATAGTGCACCTGGCCATCTCAGAGATACTACAGACGACCATTTCTACCAGAACCAAAGAGTAATAAAGAAGAGAAAGATTGTGGAGCCTACCACTCAGAGATCTTCCCTGCCATGTGGGGACAATGGTCCTGTGAGGAAACATGGAGCCGGGAAAGGTCTAATGACAGTGTGGCATGCAATGTATTCCCATAGTAGCAAAATTCAAGATGGATCTAATTTTATTGATGAAACTGGTTGCTTGAGGTCCTTGAGACCATTAGATGATTGTGGCAGAATAGAGGATTGCGATGATGGAAAGCTAATTCAGAAAAAAGTTTTGGCACGGAAAAAAGTGGTAAAAAGGACCAGGCCTCCATCCAATAAAAGAAAGGTGCCAAGTAGCAGAGTTACTGATCCGAAGAAGCATCCTCCAATGGAATGCCATCTTTCAGTTGATGAATCACAATCCCCAGTGCTACAGGCTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTCCTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTTGTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCACAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTACTTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACTGCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTTAATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTTTTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAGTGCTGTGCTATTCGTTTGGTGATCTTATCATCAATTAATCTGCATTGTTA]

[+] EMBL AK064123             [CCCGCGAGGGTTTAAGGGGGCCGGAAAGACGGCGCGGCAGCCTGAGTCGCAGGAATGGCCGCTCGCTCGCTGTAGGGTTTTTCGCCGCTCGCCGCCTCCGCCTCCGCCGCCGCGTGCCCGCGTCCACGCCCGAATCGAATCAGCCGCCGCCGCCGCAAACTCGCCGAGCAGCAGCTGAGCCTAGCACCGCGCCGCGCCGCGCTGCGCCTCGCCTGGCGGCGGATGGCCGCAAGCTAAACCCCCCCGACTCCGCGCGCTCCCCGTGCTGCCCATGGCGGCGGTTCGGAAGATGGCGGCCAATGGCCTCGCAGCAAAAAGGGAGAATACAGGGACAAAGAAATCTCCCCTGCAAATCCAGATGCTGGAGAGATTCTACTCTGAGGTACAATACCCTCAGTCGGAGGACATTGCAGAGTATGCAACATCTGTTGGTTTGACTTACAATCAGGTCAGAATATGGTTTAAGGAGCGGAGGAGGAAAGAGAGGAGAGAAACGGAATCTTTAGGGGCGCATATGGAAAAGCAACTTAGTGCAAGATCAAATGGGTTCAGATGCAGCAGCAGCAGGAGAGAAACACACACTCCGATCACAAGTTCTGTTTCCCAAGGATTATATCCTGAGGAAAGTCTTCCGCAAGGATGGTCCACCTCTTGGAAGCGAATTTGATCCCCTTCCCCATAGTGCACCTGGCCATCTCAGAGATACTACAGACGACCATTTCTACCAGAACCAAAGAGTAATAAAGAAGAGAAAGATTGTGGAGCCTACCACTCAGAGATCTTCCCTGCCATGTGGGGACAATGGTCCTGTGAGGAAACATGGAGCCGGGAAAGGTCTAATGACAGTGTGGCATGCAATGTATTCCCATAGTAGCAAAATTCAAGATGGATCTAATTTTATTGATGAAACTGGTTGCTTGAGGTCCTTGAGACCATTAGATGATTGTGGCAGAATAGAGGATTGCGATGATGGAAAGCTAATTCAGAAAAAAGTTTTGGCACGGAAAAAAGTGGTAAAAAGGACCAGGCCTCCATCCAATAAAAGAAAGGTGCCAAGTAGCAGAGTTACTGATCCGAAGAAGCATCCTCCAATGGAATGCCATCTTTCAGTTGATGAATCACAATCCCCAGTGCTACAGGCTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTCCTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTTGTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCACAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTACTTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACTGCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTTAATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTTTTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAGTGCTGTGCTATTCGTTTGGTGATCTTATCATCAATTAATCTGCATTGTTA]




>consensus_1769#0
CCCGCGAGGGTTTAAGGGGGCCGGAAAGACGGCGCGGCAGCCTGAGTCGCAGGAATGGCC
GCTCGCTCGCTGTAGGGTTTTTCGCCGCTCGCCGCCTCCGCCTCCGCCGCCGCGTGCCCG
CGTCCACGCCCGAATCGAATCAGCCGCCGCCGCCGCAAACTCGCCGAGCAGCAGCTGAGC
CTAGCACCGCGCCGCGCCGCGCTGCGCCTCGCCTGGCGGCGGATGGCCGCAAGCTAAACC
CCCCCGACTCCGCGCGCTCCCCGTGCTGCCCATGGCGGCGGTTCGGAAGATGGCGGCCAA
TGGCCTCGCAGCAAAAAGGGAGAATACAGGGACAAAGAAATCTCCCCTGCAAATCCAGAT
GCTGGAGAGATTCTACTCTGAGGTACAATACCCTCAGTCGGAGGACATTGCAGAGTATGC
AACATCTGTTGGTTTGACTTACAATCAGGTCAGAATATGGTTTAAGGAGCGGAGGAGGAA
AGAGAGGAGAGAAACGGAATCTTTAGGGGCGCATATGGAAAAGCAACTTAGTGCAAGATC
AAATGGGTTCAGATGCAGCAGCAGCAGGAGAGAAACACACACTCCGATCACAAGTTCTGT
TTCCCAAGGATTATATCCTGAGGAAAGTCTTCCGCAAGGATGGTCCACCTCTTGGAAGCG
AATTTGATCCCCTTCCCCATAGTGCACCTGGCCATCTCAGAGATACTACAGACGACCATT
TCTACCAGAACCAAAGAGTAATAAAGAAGAGAAAGATTGTGGAGCCTACCACTCAGAGAT
CTTCCCTGCCATGTGGGGACAATGGTCCTGTGAGGAAACATGGAGCCGGGAAAGGTCTAA
TGACAGTGTGGCATGCAATGTATTCCCATAGTAGCAAAATTCAAGATGGATCTAATTTTA
TTGATGAAACTGGTTGCTTGAGGTCCTTGAGACCATTAGATGATTGTGGCAGAATAGAGG
ATTGCGATGATGGAAAGCTAATTCAGAAAAAAGTTTTGGCACGGAAAAAAGTGGTAAAAA
GGACCAGGCCTCCATCCAATAAAAGAAAGGTGCCAAGTAGCAGAGTTACTGATCCGAAGA
AGCATCCTCCAATGGAATGCCATCTTTCAGTTGATGAATCACAATCCCCAGTGCTACAGG
CTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTC
CTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTT
GTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCA
CAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGATTCGATGTTGT
TGGGGGAAGTACATGTCAATCTCCTCAAGCTACTTTTGTTAAACACAGAACGGGGCAGCA
ATGATGTGTTTGTTCCACGATCTTCTAAAGACTGCAGATTTTTAAGTTTTGTGAACTTTG
TGAGTCTCGATAGTACCAATTTATGCTTCAGTTAATTTCAAATCTCGAGTATTAAATTAT
CTTCCGAAGTTTGAATGAATCAAACTCATTTTTTTCTGCACTGGAAAGTTGAATATATAT
TGTTGTAACACCAAGTGCTGTGCTATTCGTTTGGTGATCTTATCATCAATTAATCTGCAT
TGTTA

consensusID : consensus_1769#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence

                              [TACAGGCTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTCCTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTTGTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCACAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGTTGTCCGGTTTATCTACAATCGTTTTGGTTATATGGATGTCCATCCCTTCACACTTGATGAGTTGGCACAGGCATTTCATGACAAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTACTTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACTGCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTTAATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTATTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAAAAAAAAAAAAAAAAAAACTC]

[-] EMBL CF306973             [TACAGGCTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTCCTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTTGTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCACAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGTTGTCCGGTTTATCTACAATCGTTTTGGTTATATGGATGTCCATCCCTTCACACTTGATGAGTTGGCACAGGCATTTCATGACAAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTACTTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACTGCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTTAATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTATTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAAAAAAAAAAAAAAAAAAACTC]




>consensus_1769#1
TACAGGCTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAG
CAGGTCCTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCC
CTCTTTGTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCAT
TCTCCACAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGTTGTCC
GGTTTATCTACAATCGTTTTGGTTATATGGATGTCCATCCCTTCACACTTGATGAGTTGG
CACAGGCATTTCATGACAAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCA
AGCTACTTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTA
AAGACTGCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCT
TCAGTTAATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTC
ATTTTATTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAAAAAAAAAAAAAA
AAAAACTC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1769#0      CCCGCGAGGGTTTAAGGGGGCCGGAAAGACGGCGCGGCAGCCTGAGTCGCAGGAATGGCC 60
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      GCTCGCTCGCTGTAGGGTTTTTCGCCGCTCGCCGCCTCCGCCTCCGCCGCCGCGTGCCCG 120
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      CGTCCACGCCCGAATCGAATCAGCCGCCGCCGCCGCAAACTCGCCGAGCAGCAGCTGAGC 180
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      CTAGCACCGCGCCGCGCCGCGCTGCGCCTCGCCTGGCGGCGGATGGCCGCAAGCTAAACC 240
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      CCCCCGACTCCGCGCGCTCCCCGTGCTGCCCATGGCGGCGGTTCGGAAGATGGCGGCCAA 300
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      TGGCCTCGCAGCAAAAAGGGAGAATACAGGGACAAAGAAATCTCCCCTGCAAATCCAGAT 360
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      GCTGGAGAGATTCTACTCTGAGGTACAATACCCTCAGTCGGAGGACATTGCAGAGTATGC 420
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      AACATCTGTTGGTTTGACTTACAATCAGGTCAGAATATGGTTTAAGGAGCGGAGGAGGAA 480
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      AGAGAGGAGAGAAACGGAATCTTTAGGGGCGCATATGGAAAAGCAACTTAGTGCAAGATC 540
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      AAATGGGTTCAGATGCAGCAGCAGCAGGAGAGAAACACACACTCCGATCACAAGTTCTGT 600
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      TTCCCAAGGATTATATCCTGAGGAAAGTCTTCCGCAAGGATGGTCCACCTCTTGGAAGCG 660
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      AATTTGATCCCCTTCCCCATAGTGCACCTGGCCATCTCAGAGATACTACAGACGACCATT 720
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      TCTACCAGAACCAAAGAGTAATAAAGAAGAGAAAGATTGTGGAGCCTACCACTCAGAGAT 780
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      CTTCCCTGCCATGTGGGGACAATGGTCCTGTGAGGAAACATGGAGCCGGGAAAGGTCTAA 840
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      TGACAGTGTGGCATGCAATGTATTCCCATAGTAGCAAAATTCAAGATGGATCTAATTTTA 900
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      TTGATGAAACTGGTTGCTTGAGGTCCTTGAGACCATTAGATGATTGTGGCAGAATAGAGG 960
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      ATTGCGATGATGGAAAGCTAATTCAGAAAAAAGTTTTGGCACGGAAAAAAGTGGTAAAAA 1020
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      GGACCAGGCCTCCATCCAATAAAAGAAAGGTGCCAAGTAGCAGAGTTACTGATCCGAAGA 1080
consensus_1769#1      ------------------------------------------------------------
                                                                                  

consensus_1769#0      AGCATCCTCCAATGGAATGCCATCTTTCAGTTGATGAATCACAATCCCCAGTGCTACAGG 1140
consensus_1769#1      ------------------------------------------------------TACAGG 6
                                                                            ******

consensus_1769#0      CTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTC 1200
consensus_1769#1      CTAACCAAGTGACTTTAGTTGATGATGAGGAGCTTGAACTCCGTGAATTGCAAGCAGGTC 66
                      ************************************************************

consensus_1769#0      CTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTT 1260
consensus_1769#1      CTAACCCATTGAGATGTTCAGCTCACCTTTCTTCAAGTGGGAGACATGGCTGCCCTCTTT 126
                      ************************************************************

consensus_1769#0      GTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCA 1320
consensus_1769#1      GTAAAGATTTACTTTCCAGGTTTCCTCCATCAAGTGTCAAGATGAAACAGCCATTCTCCA 186
                      ************************************************************

consensus_1769#0      CAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGG------------ 1368
consensus_1769#1      CAAGACCTTGGGGGTCATCACCAGAAATGGTGAAAAAGCTTTTCCAGGTTGTCCGGTTTA 246
                      ************************************************            

consensus_1769#0      ------------------------------------------------------------
consensus_1769#1      TCTACAATCGTTTTGGTTATATGGATGTCCATCCCTTCACACTTGATGAGTTGGCACAGG 306
                                                                                  

consensus_1769#0      ---------------ATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTAC 1413
consensus_1769#1      CATTTCATGACAAGGATTCGATGTTGTTGGGGGAAGTACATGTCAATCTCCTCAAGCTAC 366
                                     *********************************************

consensus_1769#0      TTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACT 1473
consensus_1769#1      TTTTGTTAAACACAGAACGGGGCAGCAATGATGTGTTTGTTCCACGATCTTCTAAAGACT 426
                      ************************************************************

consensus_1769#0      GCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTT 1533
consensus_1769#1      GCAGATTTTTAAGTTTTGTGAACTTTGTGAGTCTCGATAGTACCAATTTATGCTTCAGTT 486
                      ************************************************************

consensus_1769#0      AATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTT 1593
consensus_1769#1      AATTTCAAATCTCGAGTATTAAATTATCTTCCGAAGTTTGAATGAATCAAACTCATTTTA 546
                      *********************************************************** 

consensus_1769#0      TTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAGTGCTGTGCTATTCGTTTG 1653
consensus_1769#1      TTCTGCACTGGAAAGTTGAATATATATTGTTGTAACACCAAAAAAAAAAAAA------AA 600
                      *****************************************          *        

consensus_1769#0      GTGATCTTATCATCAATTAATCTGCATTGTTA 1685
consensus_1769#1      AAAAACTC------------------------ 608
                         * **