cluster # 1770

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Oryza sativa
cluster # 1770 cluster # 1770 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1770#0 length = 627 sequences # 1

consensus_1770#1 length = 281 sequences # 1

consensusID : consensus_1770#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 627
fasta sequence

                              [GCTCGCCGTTCGTCCGCAACAAACCAAACCAACAACACCGAAAACCACCTGCGATTCTGCCGCCGCACGGCCCCGAGGATCCGAAGCGAGAGAAAGCGATGGCCCCGACCGCATCGATGCTGTTCCTGAGCTACCACCAGCTGCACAGGCCCGCCTCTGCGGCGGAGGCGGCGCCGGCCAGCCGGAGGAAGGAGGCGGAGGAGGAGGGGAGTAATGGCGGCGCGGCCGGCGGTCGCGTCCGGGTCAGCCTGAGCAGCGCGCTGTCCCTCCTGGCACGGCGGAGGGAGGCGGCGCCGACGCCGACGCCGCAGGCCGCCGCGGCGAAGGAGGTGACCAGGCGTGGCGGTGGTGGTGGAGATGGCGTCGCCGGCGAGGGTGAGCCGGAGGAGGCGGCGTCGCTGGAGCGTAGGTTCGAGGAGGCGGTCCGGCTCAGCTGCTGGTCTTCTTGAACATCTAAATTAGCTCTTTGCGATAATTGCATATTATCCCACATGTACATAGGTAGTGCTACTGCTGCTAGTGCCAAGCACATGCACCTTTTTTTTTCTTTTTTCTTTTGTTTGCTATGATATTGCCGCTCTGTTCCTGCATCTGCATGTTAGCTTGTACATGGATGTATAATCGATT]

[+] EMBL AK106493             [GCTCGCCGTTCGTCCGCAACAAACCAAACCAACAACACCGAAAACCACCTGCGATTCTGCCGCCGCACGGCCCCGAGGATCCGAAGCGAGAGAAAGCGATGGCCCCGACCGCATCGATGCTGTTCCTGAGCTACCACCAGCTGCACAGGCCCGCCTCTGCGGCGGAGGCGGCGCCGGCCAGCCGGAGGAAGGAGGCGGAGGAGGAGGGGAGTAATGGCGGCGCGGCCGGCGGTCGCGTCCGGGTCAGCCTGAGCAGCGCGCTGTCCCTCCTGGCACGGCGGAGGGAGGCGGCGCCGACGCCGACGCCGCAGGCCGCCGCGGCGAAGGAGGTGACCAGGCGTGGCGGTGGTGGTGGAGATGGCGTCGCCGGCGAGGGTGAGCCGGAGGAGGCGGCGTCGCTGGAGCGTAGGTTCGAGGAGGCGGTCCGGCTCAGCTGCTGGTCTTCTTGAACATCTAAATTAGCTCTTTGCGATAATTGCATATTATCCCACATGTACATAGGTAGTGCTACTGCTGCTAGTGCCAAGCACATGCACCTTTTTTTTTCTTTTTTCTTTTGTTTGCTATGATATTGCCGCTCTGTTCCTGCATCTGCATGTTAGCTTGTACATGGATGTATAATCGATT]




>consensus_1770#0
GCTCGCCGTTCGTCCGCAACAAACCAAACCAACAACACCGAAAACCACCTGCGATTCTGC
CGCCGCACGGCCCCGAGGATCCGAAGCGAGAGAAAGCGATGGCCCCGACCGCATCGATGC
TGTTCCTGAGCTACCACCAGCTGCACAGGCCCGCCTCTGCGGCGGAGGCGGCGCCGGCCA
GCCGGAGGAAGGAGGCGGAGGAGGAGGGGAGTAATGGCGGCGCGGCCGGCGGTCGCGTCC
GGGTCAGCCTGAGCAGCGCGCTGTCCCTCCTGGCACGGCGGAGGGAGGCGGCGCCGACGC
CGACGCCGCAGGCCGCCGCGGCGAAGGAGGTGACCAGGCGTGGCGGTGGTGGTGGAGATG
GCGTCGCCGGCGAGGGTGAGCCGGAGGAGGCGGCGTCGCTGGAGCGTAGGTTCGAGGAGG
CGGTCCGGCTCAGCTGCTGGTCTTCTTGAACATCTAAATTAGCTCTTTGCGATAATTGCA
TATTATCCCACATGTACATAGGTAGTGCTACTGCTGCTAGTGCCAAGCACATGCACCTTT
TTTTTTCTTTTTTCTTTTGTTTGCTATGATATTGCCGCTCTGTTCCTGCATCTGCATGTT
AGCTTGTACATGGATGTATAATCGATT

consensusID : consensus_1770#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 281
fasta sequence

                              [CCGCAACAAACCAAACCAACAACACCGAAAACNACCTGCNATTNTCCCGCCGCACGNCCCGAGGTTCCGAAGCGAGAGAAAGCNATGGCCCCGACCGCNTCGNTGCTGTTCCTGAGCTACCACCAGCTGCACAGGCCCGCTTNTNCGGCGGAGGCGGCGCCGTCCAGCCGGAGGAAGGAGGCGGAGGAGGAGGGGAGTAATGGCGGCGCGGCCGGCGGTCGTTTCCGGTTCAGCNTNAGCAGCGCGCTTGTCCCTCCTGGCACGNCGGAGGGAGGNGGCGC]

[+] EMBL C27693               [CCGCAACAAACCAAACCAACAACACCGAAAACNACCTGCNATTNTCCCGCCGCACGNCCCGAGGTTCCGAAGCGAGAGAAAGCNATGGCCCCGACCGCNTCGNTGCTGTTCCTGAGCTACCACCAGCTGCACAGGCCCGCTTNTNCGGCGGAGGCGGCGCCGTCCAGCCGGAGGAAGGAGGCGGAGGAGGAGGGGAGTAATGGCGGCGCGGCCGGCGGTCGTTTCCGGTTCAGCNTNAGCAGCGCGCTTGTCCCTCCTGGCACGNCGGAGGGAGGNGGCGC]




>consensus_1770#1
CCGCAACAAACCAAACCAACAACACCGAAAACNACCTGCNATTNTCCCGCCGCACGNCCC
GAGGTTCCGAAGCGAGAGAAAGCNATGGCCCCGACCGCNTCGNTGCTGTTCCTGAGCTAC
CACCAGCTGCACAGGCCCGCTTNTNCGGCGGAGGCGGCGCCGTCCAGCCGGAGGAAGGAG
GCGGAGGAGGAGGGGAGTAATGGCGGCGCGGCCGGCGGTCGTTTCCGGTTCAGCNTNAGC
AGCGCGCTTGTCCCTCCTGGCACGNCGGAGGGAGGNGGCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1770#0      GCTCGCCGTTCGTCCGCAACAAACCAAACCAACAACACCGAAAACCACCTGCGATTCTGC 60
consensus_1770#1      -------------CCGCAACAAACCAAACCAACAACACCGAAAACNACCTGCNATTNTCC 47
                                   ******************************** ****** *** * *

consensus_1770#0      CGCCGCACGGCCCCGAGGATCCGAAGCGAGAGAAAGCGATGGCCCCGACCGCATCGATGC 120
consensus_1770#1      CGCCGCACGNCCC-GAGGTTCCGAAGCGAGAGAAAGCNATGGCCCCGACCGCNTCGNTGC 106
                      ********* *** **** ****************** ************** *** ***

consensus_1770#0      TGTTCCTGAGCTACCACCAGCTGCACAGGCCCGCCTCTGCGGCGGAGGCGGCGCCGGCCA 180
consensus_1770#1      TGTTCCTGAGCTACCACCAGCTGCACAGGCCCGCTTNTNCGGCGGAGGCGGCGCCGTCCA 166
                      ********************************** * * ***************** ***

consensus_1770#0      GCCGGAGGAAGGAGGCGGAGGAGGAGGGGAGTAATGGCGGCGCGGCCGGCGGTCGCGTCC 240
consensus_1770#1      GCCGGAGGAAGGAGGCGGAGGAGGAGGGGAGTAATGGCGGCGCGGCCGGCGGTCGTTTCC 226
                      *******************************************************  ***

consensus_1770#0      GGGTCAGCCTGAGCAGCGCGCT-GTCCCTCCTGGCACGGCGGAGGGAGGCGGCGCCGACG 299
consensus_1770#1      GGTTCAGCNTNAGCAGCGCGCTTGTCCCTCCTGGCACGNCGGAGGGAGGNGGCGC----- 281
                      ** ***** * *********** *************** ********** *****     

consensus_1770#0      CCGACGCCGCAGGCCGCCGCGGCGAAGGAGGTGACCAGGCGTGGCGGTGGTGGTGGAGAT 359
consensus_1770#1      ------------------------------------------------------------
                                                                                  

consensus_1770#0      GGCGTCGCCGGCGAGGGTGAGCCGGAGGAGGCGGCGTCGCTGGAGCGTAGGTTCGAGGAG 419
consensus_1770#1      ------------------------------------------------------------
                                                                                  

consensus_1770#0      GCGGTCCGGCTCAGCTGCTGGTCTTCTTGAACATCTAAATTAGCTCTTTGCGATAATTGC 479
consensus_1770#1      ------------------------------------------------------------
                                                                                  

consensus_1770#0      ATATTATCCCACATGTACATAGGTAGTGCTACTGCTGCTAGTGCCAAGCACATGCACCTT 539
consensus_1770#1      ------------------------------------------------------------
                                                                                  

consensus_1770#0      TTTTTTTCTTTTTTCTTTTGTTTGCTATGATATTGCCGCTCTGTTCCTGCATCTGCATGT 599
consensus_1770#1      ------------------------------------------------------------
                                                                                  

consensus_1770#0      TAGCTTGTACATGGATGTATAATCGATT 627
consensus_1770#1      ----------------------------