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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1776#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1462 fasta sequence
[CGTGCGTTCACCCCCCTAACAACTATCTCACCCCCCTAACAACTATCTCACCGGCTCGATCAATCTCTCACCGGAGATGGTGCCCGTCCGGCCGTCCGCGGCGGCGCTGCTGCTCGCCGCCACCGCTTTCCTCGTCGTCGCGGTGGGCGCCCAGCCGCTGAGCCCGGACAGCCCCATCCTGAGGGACCCCAACGTGATCCCCATCTACATGACCCCCGGCTCGTCGCCCACCGTGGCGAGCTGCTACAACCAGAACAACACGGCGTCGGGCCCCGACTGCACGGTCGAGCCGCGCGCGTGCCCGCGCGGCTGCCGCGACATGTGCTACGTTCACTGCCCCACCTGCAAGCTCGTCTGCCTGTGTGAGCTGACCGGCACGGAGTGCTACGACCCGCGGTTCGTCGGCGGCGACGGCAACAAGTTCCTGTTCCACGGGCGCAAGGACGCCGACTTCTGCCTGCTCTCCGACGCCAACCTGCACATCAACGCGCACTTCATCGGCAAGCGCAACGCGGCGGCGGCACGGGACTTCACCTGGGTGCAGGCCCTCGGCATCCGCTTCGGCGGCCACCGCCTCTACCTCGGCGTCAGGAGGACCGTCAGGTGGGACGCCGCCGTCGACCGCCTCGTGATCACCTTCGACGGCGCGCCCGTCGAGCTGGACGCCGTCCCCGCCGCCAGCTGGAGCCCAGCCTCCGTTCCGGCGCTCTCGGTCTTCCGCACCGGCCCGGCCAACGGCGTGGTGGTGCGCCTCGACGGCCGGTTCCGCATCGTCGCCAACGCGGTGCCCGTCACGGAGGAGGACTCGAGGATCCACGGCTACGGCCTCACCGCCGACGACAGCCTCGCCCACCTCAATGTGGCGTTCAAGTTCTACTCCATCAGCGCCGACGTGCACGGCGTGCTGGGCCAGACCTACCGCCCCGACTACGTCAGCGCCGGCGTGGACGTGGGCGCCAAGATCCCGGTCATGGGTAGCGCCGGGAAGTACGCCGTTTCCGACATCTTCGCCACGGACTGCGAGGTGGCGCGCTTCGCCGGCGAGGACGGCGCGCTCGCCTCGTCCGTTGGCATGGTCGACGCGCCGGCCGACGCGCTCTTCGGCAGCGGGAAGGGCAGCGCCGGCCTGGTCTGCAAGAAGTGAGGTGAGAAAGCGAAGTCGTAGAGCTGTTTTTTCTCGGTGTTTAATTACCTATATAAACTAATATAGTAATATATACGTGCTTAGCTGCTGCTACGGTTATTAGTGGTAGTTCAAAGAATAAAAGATTTGGTGATAATTGTCGCGTGTTAGTCGTCGTCGAACGAGCAAACGCTGGGAAGGGAACAAAGTGTTTCTCACTTGTCAGTGCCGTGATTTAGGATGAGATTGCCCGGTTCAAACTTCAAAATCGTGTCGTTGCAATCCTATATCCTCTTTTGTAATCGTGTTTGAGAATAAAAGTTGAACACTGAAGCTTAA]
[+] EMBL AK108077 [CGTGCGTTCACCCCCCTAACAACTATCTCACCCCCCTAACAACTATCTCACCGGCTCGATCAATCTCTCACCGGAGATGGTGCCCGTCCGGCCGTCCGCGGCGGCGCTGCTGCTCGCCGCCACCGCTTTCCTCGTCGTCGCGGTGGGCGCCCAGCCGCTGAGCCCGGACAGCCCCATCCTGAGGGACCCCAACGTGATCCCCATCTACATGACCCCCGGCTCGTCGCCCACCGTGGCGAGCTGCTACAACCAGAACAACACGGCGTCGGGCCCCGACTGCACGGTCGAGCCGCGCGCGTGCCCGCGCGGCTGCCGCGACATGTGCTACGTTCACTGCCCCACCTGCAAGCTCGTCTGCCTGTGTGAGCTGACCGGCACGGAGTGCTACGACCCGCGGTTCGTCGGCGGCGACGGCAACAAGTTCCTGTTCCACGGGCGCAAGGACGCCGACTTCTGCCTGCTCTCCGACGCCAACCTGCACATCAACGCGCACTTCATCGGCAAGCGCAACGCGGCGGCGGCACGGGACTTCACCTGGGTGCAGGCCCTCGGCATCCGCTTCGGCGGCCACCGCCTCTACCTCGGCGTCAGGAGGACCGTCAGGTGGGACGCCGCCGTCGACCGCCTCGTGATCACCTTCGACGGCGCGCCCGTCGAGCTGGACGCCGTCCCCGCCGCCAGCTGGAGCCCAGCCTCCGTTCCGGCGCTCTCGGTCTTCCGCACCGGCCCGGCCAACGGCGTGGTGGTGCGCCTCGACGGCCGGTTCCGCATCGTCGCCAACGCGGTGCCCGTCACGGAGGAGGACTCGAGGATCCACGGCTACGGCCTCACCGCCGACGACAGCCTCGCCCACCTCAATGTGGCGTTCAAGTTCTACTCCATCAGCGCCGACGTGCACGGCGTGCTGGGCCAGACCTACCGCCCCGACTACGTCAGCGCCGGCGTGGACGTGGGCGCCAAGATCCCGGTCATGGGTAGCGCCGGGAAGTACGCCGTTTCCGACATCTTCGCCACGGACTGCGAGGTGGCGCGCTTCGCCGGCGAGGACGGCGCGCTCGCCTCGTCCGTTGGCATGGTCGACGCGCCGGCCGACGCGCTCTTCGGCAGCGGGAAGGGCAGCGCCGGCCTGGTCTGCAAGAAGTGAGGTGAGAAAGCGAAGTCGTAGAGCTGTTTTTTCTCGGTGTTTAATTACCTATATAAACTAATATAGTAATATATACGTGCTTAGCTGCTGCTACGGTTATTAGTGGTAGTTCAAAGAATAAAAGATTTGGTGATAATTGTCGCGTGTTAGTCGTCGTCGAACGAGCAAACGCTGGGAAGGGAACAAAGTGTTTCTCACTTGTCAGTGCCGTGATTTAGGATGAGATTGCCCGGTTCAAACTTCAAAATCGTGTCGTTGCAATCCTATATCCTCTTTTGTAATCGTGTTTGAGAATAAAAGTTGAACACTGAAGCTTAA]
consensusID : consensus_1776#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence
[GGCTGCAGGAATTCGGCACGAGTAACAACTATCTCACCCCCCTAACAACTATCTCACCGGCTCGAGCGGTCTCTCACCGGAGATGGTGCCCGTCCGGCCGTCCGCGGCGGCGCTGCTGCTCGCCGCCACCGCTTTCCTCGTCGTCGCGGTGGGCGCCCAGCCGCTGAGCCCGGACAGCCCCATCCTGAGGGACCCCAACGTGATCCCCATCTACATGACCCCCGGCTCGTCGCCCACCGTGGCGAGCTGCTACAACCAGAACAACACGGCGTCGGGCCCCGACTGCACGGTCGAGCCGCGCGCGTGCCCGCGCGGCTGCCGCGACATGTGCTACGTTCACTGCCCCACCTGCAAGCTCGTCTGCCTGTGTGAGCTGACCGGCACGGAGTGCTACGACCCGCGGGTCGTCGGCGGCGACGGCAACAAGTTCCTGTTTCACGGGCGCAAGGACGCCCACTTTTGCCTGCTCTCCCACGCCAACCTGCACATTAACGGCGCACTTTAACGGCAAGCGCAACCGCGGCGGCGGGAACGGGACTTTACCTGGGGTGGAGGGCCCTCGGGATTCCCTTCGGCGGGCACC]
[+] EMBL BE039213 [GGCTGCAGGAATTCGGCACGAGTAACAACTATCTCACCCCCCTAACAACTATCTCACCGGCTCGAGCGGTCTCTCACCGGAGATGGTGCCCGTCCGGCCGTCCGCGGCGGCGCTGCTGCTCGCCGCCACCGCTTTCCTCGTCGTCGCGGTGGGCGCCCAGCCGCTGAGCCCGGACAGCCCCATCCTGAGGGACCCCAACGTGATCCCCATCTACATGACCCCCGGCTCGTCGCCCACCGTGGCGAGCTGCTACAACCAGAACAACACGGCGTCGGGCCCCGACTGCACGGTCGAGCCGCGCGCGTGCCCGCGCGGCTGCCGCGACATGTGCTACGTTCACTGCCCCACCTGCAAGCTCGTCTGCCTGTGTGAGCTGACCGGCACGGAGTGCTACGACCCGCGGGTCGTCGGCGGCGACGGCAACAAGTTCCTGTTTCACGGGCGCAAGGACGCCCACTTTTGCCTGCTCTCCCACGCCAACCTGCACATTAACGGCGCACTTTAACGGCAAGCGCAACCGCGGCGGCGGGAACGGGACTTTACCTGGGGTGGAGGGCCCTCGGGATTCCCTTCGGCGGGCACC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1776#0 -----CGTGCGTTCACCCCCC-TAACAACTATCTCACCCCCCTAACAACTATCTCACCGG 54
consensus_1776#1 GGCTGCAGGAATTCGGCACGAGTAACAACTATCTCACCCCCCTAACAACTATCTCACCGG 60
* * *** * * **************************************
consensus_1776#0 CTCGATCAATCTCTCACCGGAGATGGTGCCCGTCCGGCCGTCCGCGGCGGCGCTGCTGCT 114
consensus_1776#1 CTCGAGCGGTCTCTCACCGGAGATGGTGCCCGTCCGGCCGTCCGCGGCGGCGCTGCTGCT 120
***** * ***************************************************
consensus_1776#0 CGCCGCCACCGCTTTCCTCGTCGTCGCGGTGGGCGCCCAGCCGCTGAGCCCGGACAGCCC 174
consensus_1776#1 CGCCGCCACCGCTTTCCTCGTCGTCGCGGTGGGCGCCCAGCCGCTGAGCCCGGACAGCCC 180
************************************************************
consensus_1776#0 CATCCTGAGGGACCCCAACGTGATCCCCATCTACATGACCCCCGGCTCGTCGCCCACCGT 234
consensus_1776#1 CATCCTGAGGGACCCCAACGTGATCCCCATCTACATGACCCCCGGCTCGTCGCCCACCGT 240
************************************************************
consensus_1776#0 GGCGAGCTGCTACAACCAGAACAACACGGCGTCGGGCCCCGACTGCACGGTCGAGCCGCG 294
consensus_1776#1 GGCGAGCTGCTACAACCAGAACAACACGGCGTCGGGCCCCGACTGCACGGTCGAGCCGCG 300
************************************************************
consensus_1776#0 CGCGTGCCCGCGCGGCTGCCGCGACATGTGCTACGTTCACTGCCCCACCTGCAAGCTCGT 354
consensus_1776#1 CGCGTGCCCGCGCGGCTGCCGCGACATGTGCTACGTTCACTGCCCCACCTGCAAGCTCGT 360
************************************************************
consensus_1776#0 CTGCCTGTGTGAGCTGACCGGCACGGAGTGCTACGACCCGCGGTTCGTCGGCGGCGACGG 414
consensus_1776#1 CTGCCTGTGTGAGCTGACCGGCACGGAGTGCTACGACCCGCGGGTCGTCGGCGGCGACGG 420
******************************************* ****************
consensus_1776#0 CAACAAGTTCCTGTTCCACGGGCGCAAGGACGCCGACTTCTGCCTGCTCTCCGACGCCAA 474
consensus_1776#1 CAACAAGTTCCTGTTTCACGGGCGCAAGGACGCCCACTTTTGCCTGCTCTCCCACGCCAA 480
*************** ****************** **** ************ *******
consensus_1776#0 CCTGCACATCAACG-CGCACTTCATCGGCAAGCGCAAC-GCGGCGGCGGCA-CGGGACTT 531
consensus_1776#1 CCTGCACATTAACGGCGCACTTTAACGGCAAGCGCAACCGCGGCGGCGGGAACGGGACTT 540
********* **** ******* * ************* ********** * ********
consensus_1776#0 CACCTGGGT--GCAGGCCCTCGGCATCCGCTTCGGCGGCCACCGCCTCTACCTCGGCGTC 589
consensus_1776#1 TACCTGGGGTGGAGGGCCCTCGGGATTCCCTTCGGCGGGCACC----------------- 583
******* * ********* ** * ********* ****
consensus_1776#0 AGGAGGACCGTCAGGTGGGACGCCGCCGTCGACCGCCTCGTGATCACCTTCGACGGCGCG 649
consensus_1776#1 ------------------------------------------------------------
consensus_1776#0 CCCGTCGAGCTGGACGCCGTCCCCGCCGCCAGCTGGAGCCCAGCCTCCGTTCCGGCGCTC 709
consensus_1776#1 ------------------------------------------------------------
consensus_1776#0 TCGGTCTTCCGCACCGGCCCGGCCAACGGCGTGGTGGTGCGCCTCGACGGCCGGTTCCGC 769
consensus_1776#1 ------------------------------------------------------------
consensus_1776#0 ATCGTCGCCAACGCGGTGCCCGTCACGGAGGAGGACTCGAGGATCCACGGCTACGGCCTC 829
consensus_1776#1 ------------------------------------------------------------
consensus_1776#0 ACCGCCGACGACAGCCTCGCCCACCTCAATGTGGCGTTCAAGTTCTACTCCATCAGCGCC 889
consensus_1776#1 ------------------------------------------------------------
consensus_1776#0 GACGTGCACGGCGTGCTGGGCCAGACCTACCGCCCCGACTACGTCAGCGCCGGCGTGGAC 949
consensus_1776#1 ------------------------------------------------------------
consensus_1776#0 GTGGGCGCCAAGATCCCGGTCATGGGTAGCGCCGGGAAGTACGCCGTTTCCGACATCTTC 1009
consensus_1776#1 ------------------------------------------------------------
consensus_1776#0 GCCACGGACTGCGAGGTGGCGCGCTTCGCCGGCGAGGACGGCGCGCTCGCCTCGTCCGTT 1069
consensus_1776#1 ------------------------------------------------------------
consensus_1776#0 GGCATGGTCGACGCGCCGGCCGACGCGCTCTTCGGCAGCGGGAAGGGCAGCGCCGGCCTG 1129
consensus_1776#1 ------------------------------------------------------------
consensus_1776#0 GTCTGCAAGAAGTGAGGTGAGAAAGCGAAGTCGTAGAGCTGTTTTTTCTCGGTGTTTAAT 1189
consensus_1776#1 ------------------------------------------------------------
consensus_1776#0 TACCTATATAAACTAATATAGTAATATATACGTGCTTAGCTGCTGCTACGGTTATTAGTG 1249
consensus_1776#1 ------------------------------------------------------------
consensus_1776#0 GTAGTTCAAAGAATAAAAGATTTGGTGATAATTGTCGCGTGTTAGTCGTCGTCGAACGAG 1309
consensus_1776#1 ------------------------------------------------------------
consensus_1776#0 CAAACGCTGGGAAGGGAACAAAGTGTTTCTCACTTGTCAGTGCCGTGATTTAGGATGAGA 1369
consensus_1776#1 ------------------------------------------------------------
consensus_1776#0 TTGCCCGGTTCAAACTTCAAAATCGTGTCGTTGCAATCCTATATCCTCTTTTGTAATCGT 1429
consensus_1776#1 ------------------------------------------------------------
consensus_1776#0 GTTTGAGAATAAAAGTTGAACACTGAAGCTTAA 1462
consensus_1776#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||