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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1794#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[ATNCCCTGGNTGTGTGCTAATTGCTGTGGGTTAANGTCTNTTTGGTGAATGGGACCCCTGAGTTACCGGGTTACTTTTCCTTGGAATGATATTTTATGTATACTCCCTCAGGGTGGTGTTTCTTTGTAGAGTGCGGTCCCCCTTGCCACCCGTATGCACAAACCTGCCAACAATTGTTCGTGTCCCACATAGTCGTACCACGAAAGGTCGTCCCCGTAACTCACAGTAGGGGATCGGAAACAATGGTGANCGTTGTTATGTCGTGGGTTACCCCCGTGTAGGCCACGTGCGTCGTGTGAAGGGGTATCACCTAGCCCGCAGAGGTGTGTCGTGCCCGTGTGGCCANTTTATGTGTAGAGCAACCCCAGTAGTTGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATTTGTTGGGACCCTCGGTTGAAGTGGAATAAACCACGGAAGAAGAGGCTGTAGTAAAATGGGAACCCCCNTTGGTTCGGTTGGAAGTTGTGTAAATGGTGAACCCTTGATTGGTACCAAGCTGGCTTGGGTGGTTGGGTCGTCCATAGATGAGAGATTNTATATTCNATTATTGATAAAGGCTNTACCATTTTGCGAGCCCAAAAAAAAAAAAAAAAAAAAAAAATAAACCCCCCCCTAAAAAAAAAAA]
[+] EMBL BM038248 [ATNCCCTGGNTGTGTGCTAATTGCTGTGGGTTAANGTCTNTTTGGTGAATGGGACCCCTGAGTTACCGGGTTACTTTTCCTTGGAATGATATTTTATGTATACTCCCTCAGGGTGGTGTTTCTTTGTAGAGTGCGGTCCCCCTTGCCACCCGTATGCACAAACCTGCCAACAATTGTTCGTGTCCCACATAGTCGTACCACGAAAGGTCGTCCCCGTAACTCACAGTAGGGGATCGGAAACAATGGTGANCGTTGTTATGTCGTGGGTTACCCCCGTGTAGGCCACGTGCGTCGTGTGAAGGGGTATCACCTAGCCCGCAGAGGTGTGTCGTGCCCGTGTGGCCANTTTATGTGTAGAGCAACCCCAGTAGTTGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATTTGTTGGGACCCTCGGTTGAAGTGGAATAAACCACGGAAGAAGAGGCTGTAGTAAAATGGGAACCCCCNTTGGTTCGGTTGGAAGTTGTGTAAATGGTGAACCCTTGATTGGTACCAAGCTGGCTTGGGTGGTTGGGTCGTCCATAGATGAGAGATTNTATATTCNATTATTGATAAAGGCTNTACCATTTTGCGAGCCCAAAAAAAAAAAAAAAAAAAAAAAATAAACCCCCCCCTAAAAAAAAAAA]
consensusID : consensus_1794#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[CTGGGTAGCTTTGGATGGACCCGATCCGGTACTTCTTGAGAAATTATAATTCCACAGTTTTCGTTAAGTGCTCCCGGCCCGTACCAACCGTGCACATTCGTGCCATATCTACCAGAAGGCATTCCCAGNACCACAGAGGTACGACCATGNTGACGTTGGTATCTGGTTACCTTAGCCAGGTCTGGAGGTGACCACCACGCCCAAGTTTGCGCCCTTGGCACTTATTGAAGCACACCCCATAGTGTGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATGTTGTTGGACCCTTGTTAAGTGGAATAAACCACGGAAGAAGAGCTTGTAAAATGGGAACCACGTTGTGTTGGNTGAGTTGTGGTAAATGTAACCCTGTGATTGTACCACGCCGGCTTGGGTGTTGGTNTCATAGATGAGAGATTCTATANNCCAATTATTGATAAAGGCTCTCCCATTTNGCGACCCCAAAAAAAAAA]
[+] EMBL BM420467 [CTGGGTAGCTTTGGATGGACCCGATCCGGTACTTCTTGAGAAATTATAATTCCACAGTTTTCGTTAAGTGCTCCCGGCCCGTACCAACCGTGCACATTCGTGCCATATCTACCAGAAGGCATTCCCAGNACCACAGAGGTACGACCATGNTGACGTTGGTATCTGGTTACCTTAGCCAGGTCTGGAGGTGACCACCACGCCCAAGTTTGCGCCCTTGGCACTTATTGAAGCACACCCCATAGTGTGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATGTTGTTGGACCCTTGTTAAGTGGAATAAACCACGGAAGAAGAGCTTGTAAAATGGGAACCACGTTGTGTTGGNTGAGTTGTGGTAAATGTAACCCTGTGATTGTACCACGCCGGCTTGGGTGTTGGTNTCATAGATGAGAGATTCTATANNCCAATTATTGATAAAGGCTCTCCCATTTNGCGACCCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1794#0 ATNCCCTGGNTGTGTGCTAATTGCTGTGGGTTAANGTCTNTTTGGTGAATGGGACCCCTG 60
consensus_1794#1 ------------------------------------------------------------
consensus_1794#0 AGTTACCGGGTTACTTTTCCTTGGAATGATATTTTATGTATACTCCCTCAGGGTGGTGTT 120
consensus_1794#1 ------------------------------------------------CTGGGTAGCTTT 12
* **** * **
consensus_1794#0 TCTTTG-TAGAGTGCGGTCCCCCTTGCCAC-CCGTATGCACAAACCTGCCAACAATTGTT 178
consensus_1794#1 GGATGGACCCGATCCGGTACTTCTTGAGAAATTATAATTCCACAGTTTTCGTTAAGTGCT 72
* * * **** * **** * ** ** * * * ** ** *
consensus_1794#0 CGTGTCCCACATAGTCGTACCACGAAAGGTCGTCCCCGTAACTCACAGTAGGGGATCGGA 238
consensus_1794#1 CCCGGCCCGTA----CCAACCGTGCACATTCGTGCC-ATATCTACCAGAAGGCATTCCCA 127
* * *** * * *** * * **** ** ** ** *** *** ** *
consensus_1794#0 -AACAATGGTGANCGTTGTTATGTCGTGGGTTACCCCCGTGTAGGCCACGTGCGTCGTGT 297
consensus_1794#1 GNACCACAGAG-GTACGACCATGNTGACGTTGGTATCTGGTTACCTTAGCCAGGTC---T 183
** * * * *** * * * * * ** * *** *
consensus_1794#0 GAAGGGGTATCACCTAGCCCGCAGAGGTGTGTCGTGCCCGTGTGGCCANTTTATGTGTAG 357
consensus_1794#1 GGAGGTG-ACCACCACGCCC----AAGT---TTGCGCCCTTG--GC--ACTTAT---TGA 228
* *** * * **** **** * ** * * **** ** ** **** *
consensus_1794#0 AGCAACCCCAGTAGT-TGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATTTGTT 416
consensus_1794#1 AGCACACCCCATAGTGTGGCGTTAGCACCACCACGGAATATGAACCCCTTGAGATGTTGT 288
**** *** **** *************************************** * *
consensus_1794#0 GGGACCCTCGGTTGAAGTGGAATAAACCACGGAAGAAGAGGCTGTAGTAAAATGGGAACC 476
consensus_1794#1 TGGACCCTTGTT--AAGTGGAATAAACCACGGAAGAAGAGCTTGTA---AAATGGGAACC 343
******* * * ************************** **** ***********
consensus_1794#0 CCCNTTGGTTCGGTTGGAAGTTGTGTAAATGGTGAACCCTTGATTGGTACCAAGCTGGCT 536
consensus_1794#1 AC-GTTGTGTTGGNTG--AGTTGTGGTAAATGTAACCCTGTGATTG-TACCACGCCGGCT 399
* *** * ** ** ******* ** ** * ** ****** ***** ** ****
consensus_1794#0 TGGGTGGTTGGGTCGTCCATAGATGAGAGATTNTATATTCNA-TTATTGATAAAGGCTNT 595
consensus_1794#1 TGGGTGTTGGTNTC----ATAGATGAGAGATTCTATANNCCAATTATTGATAAAGGCTCT 455
****** * * ** ************** **** * * *************** *
consensus_1794#0 ACCATTTTGCGAGCCCAAAAAAAAAAAAAAAAAAAAAAAATAAACCCCCCCCTAAAAAAA 655
consensus_1794#1 CCCATTTNGCGACCCCAAAAAAAAAA---------------------------------- 481
****** **** *************
consensus_1794#0 AAAA 659
consensus_1794#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||