cluster # 1797

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Oryza sativa
cluster # 1797 cluster # 1797 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1797#0 length = 537 sequences # 1

consensus_1797#1 length = 506 sequences # 1

consensusID : consensus_1797#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 537
fasta sequence

                              [CAAGATTAATCTCAAGCTCAATTCGAAGTCTTAGTCAACAAGATCAAGAAACTTGAAGGAGCTAGGGATGAGGTTTCCAATGCTGCTACACCACTTGTCCAATGGTCCGAGTTCATTCGACGCTGTTGAAATCATTAAAGAAGCTGAGAACTACTCCGGATATATATTTCAAAAATATTAAAGAAGCTGGGAGCATGGGAGCAAGCATGGCCTTGGCGATGACTAAATCTTTGTATCCGAAGATCAATATTAATGACATTGATGGCTTTGCAGACGGAACAAGTGAAGAAGACGCCCTTGAGCTTATCAATGATGCCCAGAAAGCTGCGGTCAAGATTGTTGTAGACGCTTCGTAGACGAGACTTCCAAGATTCCAACCTTGGTTCGACCTGGGGCTGATATAACTGATGATGAAAAAACATAATCCTGATTGATGATGTAATCTTTGATGCCTGGAGGCTCAATTTGTACAATACTGATGTATTTATGTTGTGCTTGATAATCTNCCCCCTTAGCATTTGACTTTCTTAAAAAAAA]

[+] EMBL BM038245             [CAAGATTAATCTCAAGCTCAATTCGAAGTCTTAGTCAACAAGATCAAGAAACTTGAAGGAGCTAGGGATGAGGTTTCCAATGCTGCTACACCACTTGTCCAATGGTCCGAGTTCATTCGACGCTGTTGAAATCATTAAAGAAGCTGAGAACTACTCCGGATATATATTTCAAAAATATTAAAGAAGCTGGGAGCATGGGAGCAAGCATGGCCTTGGCGATGACTAAATCTTTGTATCCGAAGATCAATATTAATGACATTGATGGCTTTGCAGACGGAACAAGTGAAGAAGACGCCCTTGAGCTTATCAATGATGCCCAGAAAGCTGCGGTCAAGATTGTTGTAGACGCTTCGTAGACGAGACTTCCAAGATTCCAACCTTGGTTCGACCTGGGGCTGATATAACTGATGATGAAAAAACATAATCCTGATTGATGATGTAATCTTTGATGCCTGGAGGCTCAATTTGTACAATACTGATGTATTTATGTTGTGCTTGATAATCTNCCCCCTTAGCATTTGACTTTCTTAAAAAAAA]




>consensus_1797#0
CAAGATTAATCTCAAGCTCAATTCGAAGTCTTAGTCAACAAGATCAAGAAACTTGAAGGA
GCTAGGGATGAGGTTTCCAATGCTGCTACACCACTTGTCCAATGGTCCGAGTTCATTCGA
CGCTGTTGAAATCATTAAAGAAGCTGAGAACTACTCCGGATATATATTTCAAAAATATTA
AAGAAGCTGGGAGCATGGGAGCAAGCATGGCCTTGGCGATGACTAAATCTTTGTATCCGA
AGATCAATATTAATGACATTGATGGCTTTGCAGACGGAACAAGTGAAGAAGACGCCCTTG
AGCTTATCAATGATGCCCAGAAAGCTGCGGTCAAGATTGTTGTAGACGCTTCGTAGACGA
GACTTCCAAGATTCCAACCTTGGTTCGACCTGGGGCTGATATAACTGATGATGAAAAAAC
ATAATCCTGATTGATGATGTAATCTTTGATGCCTGGAGGCTCAATTTGTACAATACTGAT
GTATTTATGTTGTGCTTGATAATCTNCCCCCTTAGCATTTGACTTTCTTAAAAAAAA

consensusID : consensus_1797#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [CTCAATTCGAAGTCNTAGTCACAAGATCAAGAAACTTGAAGGAGTCTAGGGATGAGGTTTCCAATGCTCGCTACACCACTTGTCCATATGGTCCGAGTTCATTCGACGCTGTTGAAATCATTAAAGAAGCTGAGAACTACTCCGGATATATATGTCAAAAATATTAAAGAAGCTGGGGAGCATGGGACAAGCATGCCTTGGCGAGTGACTAAATCTCTTGTATCCGAAGATCAATATTAANCGACATTGATGCCTTTGCAGCCGGAACAAGTGAAGAAGACGCCCTTGAGCGTTATCTATGATGCCCAGAAAGCTCGGTCAAGATTGTTTGTAGACGTGGTAGAGAGATTCCCAAGATTCCACTTGGTTCGACTGGGCTGANATAACTGATGAGNGAAAAACATAATCTGATGATGATGTAATCTTCAANGCGGGAGGCTCAATTGGCCAAANACTGAGGTATTTATGTGGCCTGGATAATNGGACCTTACCTTGATTCTTAAAAA]

[+] EMBL BM420861             [CTCAATTCGAAGTCNTAGTCACAAGATCAAGAAACTTGAAGGAGTCTAGGGATGAGGTTTCCAATGCTCGCTACACCACTTGTCCATATGGTCCGAGTTCATTCGACGCTGTTGAAATCATTAAAGAAGCTGAGAACTACTCCGGATATATATGTCAAAAATATTAAAGAAGCTGGGGAGCATGGGACAAGCATGCCTTGGCGAGTGACTAAATCTCTTGTATCCGAAGATCAATATTAANCGACATTGATGCCTTTGCAGCCGGAACAAGTGAAGAAGACGCCCTTGAGCGTTATCTATGATGCCCAGAAAGCTCGGTCAAGATTGTTTGTAGACGTGGTAGAGAGATTCCCAAGATTCCACTTGGTTCGACTGGGCTGANATAACTGATGAGNGAAAAACATAATCTGATGATGATGTAATCTTCAANGCGGGAGGCTCAATTGGCCAAANACTGAGGTATTTATGTGGCCTGGATAATNGGACCTTACCTTGATTCTTAAAAA]




>consensus_1797#1
CTCAATTCGAAGTCNTAGTCACAAGATCAAGAAACTTGAAGGAGTCTAGGGATGAGGTTT
CCAATGCTCGCTACACCACTTGTCCATATGGTCCGAGTTCATTCGACGCTGTTGAAATCA
TTAAAGAAGCTGAGAACTACTCCGGATATATATGTCAAAAATATTAAAGAAGCTGGGGAG
CATGGGACAAGCATGCCTTGGCGAGTGACTAAATCTCTTGTATCCGAAGATCAATATTAA
NCGACATTGATGCCTTTGCAGCCGGAACAAGTGAAGAAGACGCCCTTGAGCGTTATCTAT
GATGCCCAGAAAGCTCGGTCAAGATTGTTTGTAGACGTGGTAGAGAGATTCCCAAGATTC
CACTTGGTTCGACTGGGCTGANATAACTGATGAGNGAAAAACATAATCTGATGATGATGT
AATCTTCAANGCGGGAGGCTCAATTGGCCAAANACTGAGGTATTTATGTGGCCTGGATAA
TNGGACCTTACCTTGATTCTTAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1797#0      CAAGATTAATCTCAAGCTCAATTCGAAGTCTTAGTCAACAAGATCAAGAAACTTGAAGGA 60
consensus_1797#1      ----------------CTCAATTCGAAGTCNTAGTCA-CAAGATCAAGAAACTTGAAGGA 43
                                      ************** ****** **********************

consensus_1797#0      G-CTAGGGATGAGGTTTCCAATGCT-GCTACACCACTTGTCCA-ATGGTCCGAGTTCATT 117
consensus_1797#1      GTCTAGGGATGAGGTTTCCAATGCTCGCTACACCACTTGTCCATATGGTCCGAGTTCATT 103
                      * *********************** ***************** ****************

consensus_1797#0      CGACGCTGTTGAAATCATTAAAGAAGCTGAGAACTACTCCGGATATATATTTCAAAAATA 177
consensus_1797#1      CGACGCTGTTGAAATCATTAAAGAAGCTGAGAACTACTCCGGATATATATGTCAAAAATA 163
                      ************************************************** *********

consensus_1797#0      TTAAAGAAGCTGGG-AGCATGGGAGCAAGCATGGCCTTGGCGA-TGACTAAATCT-TTGT 234
consensus_1797#1      TTAAAGAAGCTGGGGAGCATGGGA-CAAGCATG-CCTTGGCGAGTGACTAAATCTCTTGT 221
                      ************** ********* ******** ********* *********** ****

consensus_1797#0      ATCCGAAGATCAATATTAAT-GACATTGATGGCTTTGCAGACGGAACAAGTGAAGAAGAC 293
consensus_1797#1      ATCCGAAGATCAATATTAANCGACATTGATGCCTTTGCAGCCGGAACAAGTGAAGAAGAC 281
                      *******************  ********** ******** *******************

consensus_1797#0      GCCCTTGAGC-TTATCAATGATGCCCAGAAAGCTGCGGTCAAGATTGTT-GTAGACGCTT 351
consensus_1797#1      GCCCTTGAGCGTTATCTATGATGCCCAGAAAGCT-CGGTCAAGATTGTTTGTAGACG--T 338
                      ********** ***** ***************** ************** *******  *

consensus_1797#0      CGTAGACGAGACTTCCAAGATTCCAACCTTGGTTCGACCTGGGGCTGATATAACTGATGA 411
consensus_1797#1      GGTAGA-GAGATTCCCAAGATTCCA--CTTGGTTCGACT--GGGCTGANATAACTGATGA 393
                       ***** **** * ***********  ***********   ******* ***********

consensus_1797#0      TGAAAAAACATAATCCTGATTGATGATGTAATCTTTGATGCCTGGAGGCTCAATTTGTAC 471
consensus_1797#1      GNGAAAAACATAATC-TGAT-GATGATGTAATCTTCAANGCG-GGAGGCTCAATTGGCCA 450
                         ************ **** **************  * **  ************ *   

consensus_1797#0      AATACTGATGTATTTATGTTGTGCTTGATAATCTNCCCCCTTAGCATTTGACTTTCTTAA 531
consensus_1797#1      AANACTGAGGTATTTATGTGGC-CTGGATAATNGGACC--TTACC--TTGA--TTCTTAA 503
                      ** ***** ********** *  ** ******    **  *** *  ****  *******

consensus_1797#0      AAAAAA 537
consensus_1797#1      AAA--- 506
                      ***