cluster # 1800

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Oryza sativa
cluster # 1800 cluster # 1800 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1800#0 length = 440 sequences # 1

consensus_1800#1 length = 368 sequences # 1

consensusID : consensus_1800#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 440
fasta sequence

                              [GAGAATTGGCTGCCAAGGAGGGTTATGAGCGCATGGCGAATCGCGGGAATTCTTCATGCGTTGGAGGGATGGAATGAGCATGAATGTGGTGACAAGGTGCTTGATATGGACAAAGTTTGGTCTGCTGCAATTATGCATGGGTTCTGCCCAGTTGCTCAAGGTTGATGATTCAGTTGCAAAGTATCAGAATAAGTTTTAGCTGGATTATGCTATGTGGTCACCGTATCAGAAAGAGAGATGTTCTGTTGGCAAGAAGAGATATAGTATCTGAGTAATTTCATCTGCCATGGTTTTTAAAACATTGTTCATCATCTCCTTTGATCAAAGACTGGCCATGGCTACTTTCTGTATAAGTATCTGTCCTTTTTAGTCCATAGTGTAATTCAGCAACAAAACACTCTTGGCATTGTTATGCAGTCTCATGAATGTTTTTCCAAAAA]

[+] EMBL AU101277             [GAGAATTGGCTGCCAAGGAGGGTTATGAGCGCATGGCGAATCGCGGGAATTCTTCATGCGTTGGAGGGATGGAATGAGCATGAATGTGGTGACAAGGTGCTTGATATGGACAAAGTTTGGTCTGCTGCAATTATGCATGGGTTCTGCCCAGTTGCTCAAGGTTGATGATTCAGTTGCAAAGTATCAGAATAAGTTTTAGCTGGATTATGCTATGTGGTCACCGTATCAGAAAGAGAGATGTTCTGTTGGCAAGAAGAGATATAGTATCTGAGTAATTTCATCTGCCATGGTTTTTAAAACATTGTTCATCATCTCCTTTGATCAAAGACTGGCCATGGCTACTTTCTGTATAAGTATCTGTCCTTTTTAGTCCATAGTGTAATTCAGCAACAAAACACTCTTGGCATTGTTATGCAGTCTCATGAATGTTTTTCCAAAAA]




>consensus_1800#0
GAGAATTGGCTGCCAAGGAGGGTTATGAGCGCATGGCGAATCGCGGGAATTCTTCATGCG
TTGGAGGGATGGAATGAGCATGAATGTGGTGACAAGGTGCTTGATATGGACAAAGTTTGG
TCTGCTGCAATTATGCATGGGTTCTGCCCAGTTGCTCAAGGTTGATGATTCAGTTGCAAA
GTATCAGAATAAGTTTTAGCTGGATTATGCTATGTGGTCACCGTATCAGAAAGAGAGATG
TTCTGTTGGCAAGAAGAGATATAGTATCTGAGTAATTTCATCTGCCATGGTTTTTAAAAC
ATTGTTCATCATCTCCTTTGATCAAAGACTGGCCATGGCTACTTTCTGTATAAGTATCTG
TCCTTTTTAGTCCATAGTGTAATTCAGCAACAAAACACTCTTGGCATTGTTATGCAGTCT
CATGAATGTTTTTCCAAAAA

consensusID : consensus_1800#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 368
fasta sequence

                              [GAGAATTGGCTGCCAAGGAGGGTTATGAGCGCATGGCGAATCGCGGGAATTCTTCATGCGTTGGAGGGATGGAATGAGCATGAATGTGGTGACAAGGTGCTTGATATGGACAAAGTTTGGTCTGCTGCAATTATGCATGGGTTCTGCCCAGTTGCTCAAGGTTGATGATTCAGTTGCAAAGTATCAGAATAAGTTTTAGCTGGATTATGCTATGTGGTCACCGTATCAGAAAGAGAGATGTTCTGTTGGCAAGAAGAGATATAGTATCTGAGTAATTTCATCTGCCATGGTTTTTAAAACATTGTTCATCATCTCCTTTGATCAAAGACTGGCCATGGCTACTTTCTGTATAAAAAAAAAAAAAAAAA]

[+] EMBL AU094829             [GAGAATTGGCTGCCAAGGAGGGTTATGAGCGCATGGCGAATCGCGGGAATTCTTCATGCGTTGGAGGGATGGAATGAGCATGAATGTGGTGACAAGGTGCTTGATATGGACAAAGTTTGGTCTGCTGCAATTATGCATGGGTTCTGCCCAGTTGCTCAAGGTTGATGATTCAGTTGCAAAGTATCAGAATAAGTTTTAGCTGGATTATGCTATGTGGTCACCGTATCAGAAAGAGAGATGTTCTGTTGGCAAGAAGAGATATAGTATCTGAGTAATTTCATCTGCCATGGTTTTTAAAACATTGTTCATCATCTCCTTTGATCAAAGACTGGCCATGGCTACTTTCTGTATAAAAAAAAAAAAAAAAA]




>consensus_1800#1
GAGAATTGGCTGCCAAGGAGGGTTATGAGCGCATGGCGAATCGCGGGAATTCTTCATGCG
TTGGAGGGATGGAATGAGCATGAATGTGGTGACAAGGTGCTTGATATGGACAAAGTTTGG
TCTGCTGCAATTATGCATGGGTTCTGCCCAGTTGCTCAAGGTTGATGATTCAGTTGCAAA
GTATCAGAATAAGTTTTAGCTGGATTATGCTATGTGGTCACCGTATCAGAAAGAGAGATG
TTCTGTTGGCAAGAAGAGATATAGTATCTGAGTAATTTCATCTGCCATGGTTTTTAAAAC
ATTGTTCATCATCTCCTTTGATCAAAGACTGGCCATGGCTACTTTCTGTATAAAAAAAAA
AAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1800#0      GAGAATTGGCTGCCAAGGAGGGTTATGAGCGCATGGCGAATCGCGGGAATTCTTCATGCG 60
consensus_1800#1      GAGAATTGGCTGCCAAGGAGGGTTATGAGCGCATGGCGAATCGCGGGAATTCTTCATGCG 60
                      ************************************************************

consensus_1800#0      TTGGAGGGATGGAATGAGCATGAATGTGGTGACAAGGTGCTTGATATGGACAAAGTTTGG 120
consensus_1800#1      TTGGAGGGATGGAATGAGCATGAATGTGGTGACAAGGTGCTTGATATGGACAAAGTTTGG 120
                      ************************************************************

consensus_1800#0      TCTGCTGCAATTATGCATGGGTTCTGCCCAGTTGCTCAAGGTTGATGATTCAGTTGCAAA 180
consensus_1800#1      TCTGCTGCAATTATGCATGGGTTCTGCCCAGTTGCTCAAGGTTGATGATTCAGTTGCAAA 180
                      ************************************************************

consensus_1800#0      GTATCAGAATAAGTTTTAGCTGGATTATGCTATGTGGTCACCGTATCAGAAAGAGAGATG 240
consensus_1800#1      GTATCAGAATAAGTTTTAGCTGGATTATGCTATGTGGTCACCGTATCAGAAAGAGAGATG 240
                      ************************************************************

consensus_1800#0      TTCTGTTGGCAAGAAGAGATATAGTATCTGAGTAATTTCATCTGCCATGGTTTTTAAAAC 300
consensus_1800#1      TTCTGTTGGCAAGAAGAGATATAGTATCTGAGTAATTTCATCTGCCATGGTTTTTAAAAC 300
                      ************************************************************

consensus_1800#0      ATTGTTCATCATCTCCTTTGATCAAAGACTGGCCATGGCTACTTTCTGTATAAGTATCTG 360
consensus_1800#1      ATTGTTCATCATCTCCTTTGATCAAAGACTGGCCATGGCTACTTTCTGTATAAAAAAAAA 360
                      *****************************************************  *    

consensus_1800#0      TCCTTTTTAGTCCATAGTGTAATTCAGCAACAAAACACTCTTGGCATTGTTATGCAGTCT 420
consensus_1800#1      AAAAAAAA---------------------------------------------------- 368
                                                                                  

consensus_1800#0      CATGAATGTTTTTCCAAAAA 440
consensus_1800#1      --------------------