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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 745 fasta sequence
[GCATTTTAGCCCCTGTTTTGAGTGGCTCATCGCGTTTCGCTCTCGCCTCCGGCGGCGCCCGCCGCCGGCATCGCCGTGGGAGCCCCGCCCAACCATGCTCCTCTTCTCCGCGGGAAGAGAAAGGCTCCTAGATCACTGCGAGAGCTGCCCCCAACCCAATCATCGCCGCTGGCCGCTGCAGCCGGAGAGGGGGGGGGGGGGGGAAGGACGGGAGGTTTCCGGCGAGAAGCAAGCGCGCTACGTCTACGCGCGGTTAGTCCCGCCGTATCTCCTCCTTGAAGGTGAGCTCCGACGCCAAGGCAGCTAGCTGCTTTGCTGCTGGCTCCTGGGTCCACGCTGCTGAAGCTGAACAGAACACCGTCATGGCCCCGGCAGCGGCGATGCAATCCGAAGATGATGATGACTGGCTTTTGAGTTTTGACAGAGGTAACACCATAAAAGGCTCAAAAGTAAATATGAGTCCAATGAGCTCCACAAAGTTCAGCATCAAGAACACCACTTGATCACCTACAGGTTTCAAGAAAGCCAAACTGGATCAGCCTTTCCTTTTTCTTTTTCCTGATTACATGTTCTTTTAGTACAATTAGTCCAGGCAAACCCCTTGTTAACGAAATAAGATAGGACAAGGGTATGTAATGTATGGTCGACTGAAAGATATGGTAGTTTACTAGGCCAAACAAATTGAAAGACAAGGGAGGGAAGGGGTGTTCTTTCGGCCAACCTGGCTAATTAAAAGACGAGGCAA]
[+] EMBL AK068041 [GCATTTTAGCCCCTGTTTTGAGTGGCTCATCGCGTTTCGCTCTCGCCTCCGGCGGCGCCCGCCGCCGGCATCGCCGTGGGAGCCCCGCCCAACCATGCTCCTCTTCTCCGCGGGAAGAGAAAGGCTCCTAGATCACTGCGAGAGCTGCCCCCAACCCAATCATCGCCGCTGGCCGCTGCAGCCGGAGAGGGGGGGGGGGGGGGAAGGACGGGAGGTTTCCGGCGAGAAGCAAGCGCGCTACGTCTACGCGCGGTTAGTCCCGCCGTATCTCCTCCTTGAAGGTGAGCTCCGACGCCAAGGCAGCTAGCTGCTTTGCTGCTGGCTCCTGGGTCCACGCTGCTGAAGCTGAACAGAACACCGTCATGGCCCCGGCAGCGGCGATGCAATCCGAAGATGATGATGACTGGCTTTTGAGTTTTGACAGAGGTAACACCATAAAAGGCTCAAAAGTAAATATGAGTCCAATGAGCTCCACAAAGTTCAGCATCAAGAACACCACTTGATCACCTACAGGTTTCAAGAAAGCCAAACTGGATCAGCCTTTCCTTTTTCTTTTTCCTGATTACATGTTCTTTTAGTACAATTAGTCCAGGCAAACCCCTTGTTAACGAAATAAGATAGGACAAGGGTATGTAATGTATGGTCGACTGAAAGATATGGTAGTTTACTAGGCCAAACAAATTGAAAGACAAGGGAGGGAAGGGGTGTTCTTTCGGCCAACCTGGCTAATTAAAAGACGAGGCAA]
consensusID : consensus_1801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 487 fasta sequence
[TCTTGTTAGATTCTGATCGCGAGGCGGTCAAGAAGGCATGAGGCGCGATCCGAAGCAGGGGCCAGAATGCAAAAAGAAGCGATCCTGATTTTTGCATTTTAGCCCCTGTTTTGAGTGGCTCTTCGCGTTTCGCTCTCGCCTCCGGGGCGCGTCCGCCGCCGGCATCGCCGTTGCACCCGGCCTCACCACGGCCCTCGTCTCCACCGCATACGCATTGATTCATGAGAGCTGCCCCCAATCATCGCCGCGGCGCCCGGAGCGGGGGAGGGAGGGAGGGAAGCCTCCCAGCGAGAATTAACAGCTAAATGGCTGTAGCTTCGCCTTCTCTCCTTTCTGATTGCGAGCACCACGGCCCCGAGCAGCGATGGCGGCGGCGGCGACGACGACGACGACGACGACCACGCTAGAGGCAGCTGGCTCCACTGAACACCGTGGCGGGCGGCGCGATGCAATCTGAAGATGGTGACTGGCTTTTTACGGAGGTAAC]
[+] EMBL CA752621 [TCTTGTTAGATTCTGATCGCGAGGCGGTCAAGAAGGCATGAGGCGCGATCCGAAGCAGGGGCCAGAATGCAAAAAGAAGCGATCCTGATTTTTGCATTTTAGCCCCTGTTTTGAGTGGCTCTTCGCGTTTCGCTCTCGCCTCCGGGGCGCGTCCGCCGCCGGCATCGCCGTTGCACCCGGCCTCACCACGGCCCTCGTCTCCACCGCATACGCATTGATTCATGAGAGCTGCCCCCAATCATCGCCGCGGCGCCCGGAGCGGGGGAGGGAGGGAGGGAAGCCTCCCAGCGAGAATTAACAGCTAAATGGCTGTAGCTTCGCCTTCTCTCCTTTCTGATTGCGAGCACCACGGCCCCGAGCAGCGATGGCGGCGGCGGCGACGACGACGACGACGACGACCACGCTAGAGGCAGCTGGCTCCACTGAACACCGTGGCGGGCGGCGCGATGCAATCTGAAGATGGTGACTGGCTTTTTACGGAGGTAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1801#0 ------------------------------------------------------------
consensus_1801#1 TCTTGTTAGATTCTGATCGCGAGGCGGTCAAGAAGGCATGAGGCGCGATCCGAAGCAGGG 60
consensus_1801#0 ---------------------------------GCATTTTAGCCCCTGTTTTGAGTGGCT 27
consensus_1801#1 GCCAGAATGCAAAAAGAAGCGATCCTGATTTTTGCATTTTAGCCCCTGTTTTGAGTGGCT 120
***************************
consensus_1801#0 CATCGCGTTTCGCTCTCGCCTCCGGCG-GCGCCCGCCGCCGGCATCGCCGTGGGAGCCCC 86
consensus_1801#1 CTTCGCGTTTCGCTCTCGCCTCCGGGGCGCGTCCGCCGCCGGCATCGCCGTTGCA-CCCG 179
* *********************** * *** ******************* * * ***
consensus_1801#0 GCCCAACCATGCTCCTCTTCTCCGCGGGAAGAGAAAGGCTCCTAGATCACTGCGAGAGCT 146
consensus_1801#1 GCCTCACCACGGCCCTCGTCTCCACCGCATACGCATTGATTC---------ATGAGAGCT 230
*** **** * **** ***** * * * * * * * * *******
consensus_1801#0 GCCCCCAACCCAATCATCGCCGCTGGCCGCTGCAGCCGGAGAGGGGGGGGGGGGGGGAAG 206
consensus_1801#1 GCCCC-----CAATCATCGCC-------GCGGCGCCCGGAGCGGGGGAGGGAGGGAG--- 275
***** *********** ** ** ****** ***** *** *** *
consensus_1801#0 GACGGGAGGTTTCCGGCGAGAAGCAAGCGCGCTACGTCTACGCGCGGTTAGTCCCGCCGT 266
consensus_1801#1 ---GGAAGCCTCCCAGCGAGAATTAACAGCTAAATGGCTG--------TAGCTTCGCCTT 324
** ** * ** ******* ** ** * * ** *** **** *
consensus_1801#0 ATCTCCTCCTTGAAGGTGAGCTCCGACGCCAAGGCAGCTAGCTGCTTTGCTGCTGGCTCC 326
consensus_1801#1 CTCTCCTTTCTGATTGCGAGCACCACGGCCCCGAGCAGCGATGGCGGCGGCGGCGACGAC 384
****** *** * **** ** *** * ** * * * * *
consensus_1801#0 TGGGTCCACGCTGCTGAAGCTGAACAGAAC--ACCGTCATGGCCCCGGCAGCGG-CGATG 383
consensus_1801#1 GACGACGACGACGACCACGCTAGAGGCAGCTGGCTCCACTGAACACCGTGGCGGGCGGCG 444
* * *** * * *** * * * * ** * * * **** ** *
consensus_1801#0 CAATCCGAA--GATGATGATGACTGGCTTTTGAGTTTTGACAGAGGTAACACCATAAAAG 441
consensus_1801#1 CGATGCAATCTGAAGATGGTGACTGGCTTT-------TTACGGAGGTAAC---------- 487
* ** * * ** **** *********** * ** ********
consensus_1801#0 GCTCAAAAGTAAATATGAGTCCAATGAGCTCCACAAAGTTCAGCATCAAGAACACCACTT 501
consensus_1801#1 ------------------------------------------------------------
consensus_1801#0 GATCACCTACAGGTTTCAAGAAAGCCAAACTGGATCAGCCTTTCCTTTTTCTTTTTCCTG 561
consensus_1801#1 ------------------------------------------------------------
consensus_1801#0 ATTACATGTTCTTTTAGTACAATTAGTCCAGGCAAACCCCTTGTTAACGAAATAAGATAG 621
consensus_1801#1 ------------------------------------------------------------
consensus_1801#0 GACAAGGGTATGTAATGTATGGTCGACTGAAAGATATGGTAGTTTACTAGGCCAAACAAA 681
consensus_1801#1 ------------------------------------------------------------
consensus_1801#0 TTGAAAGACAAGGGAGGGAAGGGGTGTTCTTTCGGCCAACCTGGCTAATTAAAAGACGAG 741
consensus_1801#1 ------------------------------------------------------------
consensus_1801#0 GCAA 745
consensus_1801#1 ----
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||