cluster # 181

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Oryza sativa
cluster # 181 cluster # 181 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_181#0 length = 759 sequences # 1

consensus_181#1 length = 622 sequences # 1

consensusID : consensus_181#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 759
fasta sequence

                              [GCGATGCTGTTCAGGATCTATGCCATGTTCTTAGCAGTTTGTCCAAAAGCTTCACGTGGCTCTCTTCTTAATTCTTATTCAGCTCGCCACACTGTTGACTGAAAAATTGGAGCAGGCACTGCAGGTGATCGGTTAGGAGGGAGGAGGAATGGGGAAGGCGGGGAGATGGCTGAGGAGCTTCTTGGCCGGCGGCAAGAAGGGTGGCAAGAAGGGCGAGGCAATGGCGGCGGCTTTGCCCGGAGAGGCGGCGAAGGAGAAGCGGTGGAGCTTCAGGCGACCGGTGCACGGCGAGAAGGCGACGCCGCCGTGGCCGCGGCGCACGCCGCGGCCGCCGCCGTCCGCCTCTCCTCCCGCAAGGCGCACCAGCTGCCGGCGAGCGCCGTCGAGGAGGCGGCGGCTGTCAAGATTCAGGCCACCTTCAGAGGCTACCTGGCAAGAACAGCGCTGTGCGCGCTGAGGGGCATCGTGAAGTTGCAAGCTCTGGTGCGAGGCCAGCTCGTGAGGAAGCAGGCGACCGCCACGCTCCGCTGCATGCAGGCTCTCCTCGCGGCGCAGTCGCAGCTGCGCGCGCAGGCGCAGCGGGTGCGCGCGCTGCACGAACACCACCGGACGCCGCCCAGGCCACGGCCGCCGTCGCCGCCGCAGCACCCGAGGCACCGCCGATCCTACGAGATGGACAGGTCGTGCGAGGAGAACGCCAAGATCGTGGAGGTGGACAGCGGCGCCGGCGAGCCGGCGCGGCGCGGCGGCAAGTACGGC]

[+] EMBL CB650222             [GCGATGCTGTTCAGGATCTATGCCATGTTCTTAGCAGTTTGTCCAAAAGCTTCACGTGGCTCTCTTCTTAATTCTTATTCAGCTCGCCACACTGTTGACTGAAAAATTGGAGCAGGCACTGCAGGTGATCGGTTAGGAGGGAGGAGGAATGGGGAAGGCGGGGAGATGGCTGAGGAGCTTCTTGGCCGGCGGCAAGAAGGGTGGCAAGAAGGGCGAGGCAATGGCGGCGGCTTTGCCCGGAGAGGCGGCGAAGGAGAAGCGGTGGAGCTTCAGGCGACCGGTGCACGGCGAGAAGGCGACGCCGCCGTGGCCGCGGCGCACGCCGCGGCCGCCGCCGTCCGCCTCTCCTCCCGCAAGGCGCACCAGCTGCCGGCGAGCGCCGTCGAGGAGGCGGCGGCTGTCAAGATTCAGGCCACCTTCAGAGGCTACCTGGCAAGAACAGCGCTGTGCGCGCTGAGGGGCATCGTGAAGTTGCAAGCTCTGGTGCGAGGCCAGCTCGTGAGGAAGCAGGCGACCGCCACGCTCCGCTGCATGCAGGCTCTCCTCGCGGCGCAGTCGCAGCTGCGCGCGCAGGCGCAGCGGGTGCGCGCGCTGCACGAACACCACCGGACGCCGCCCAGGCCACGGCCGCCGTCGCCGCCGCAGCACCCGAGGCACCGCCGATCCTACGAGATGGACAGGTCGTGCGAGGAGAACGCCAAGATCGTGGAGGTGGACAGCGGCGCCGGCGAGCCGGCGCGGCGCGGCGGCAAGTACGGC]




>consensus_181#0
GCGATGCTGTTCAGGATCTATGCCATGTTCTTAGCAGTTTGTCCAAAAGCTTCACGTGGC
TCTCTTCTTAATTCTTATTCAGCTCGCCACACTGTTGACTGAAAAATTGGAGCAGGCACT
GCAGGTGATCGGTTAGGAGGGAGGAGGAATGGGGAAGGCGGGGAGATGGCTGAGGAGCTT
CTTGGCCGGCGGCAAGAAGGGTGGCAAGAAGGGCGAGGCAATGGCGGCGGCTTTGCCCGG
AGAGGCGGCGAAGGAGAAGCGGTGGAGCTTCAGGCGACCGGTGCACGGCGAGAAGGCGAC
GCCGCCGTGGCCGCGGCGCACGCCGCGGCCGCCGCCGTCCGCCTCTCCTCCCGCAAGGCG
CACCAGCTGCCGGCGAGCGCCGTCGAGGAGGCGGCGGCTGTCAAGATTCAGGCCACCTTC
AGAGGCTACCTGGCAAGAACAGCGCTGTGCGCGCTGAGGGGCATCGTGAAGTTGCAAGCT
CTGGTGCGAGGCCAGCTCGTGAGGAAGCAGGCGACCGCCACGCTCCGCTGCATGCAGGCT
CTCCTCGCGGCGCAGTCGCAGCTGCGCGCGCAGGCGCAGCGGGTGCGCGCGCTGCACGAA
CACCACCGGACGCCGCCCAGGCCACGGCCGCCGTCGCCGCCGCAGCACCCGAGGCACCGC
CGATCCTACGAGATGGACAGGTCGTGCGAGGAGAACGCCAAGATCGTGGAGGTGGACAGC
GGCGCCGGCGAGCCGGCGCGGCGCGGCGGCAAGTACGGC

consensusID : consensus_181#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 622
fasta sequence

                              [AGAAGCGGTGGAGCTTCAGGCGACCGGTGCACGGCGAGAAGGCGGCGGCGGAGGCGGCGGCGGCGGCGGACGGCGTGGTGGTGGGCGAGGCCGAGGCGGGGTTTGATCTGTCCGCGTCGGAGTCGGAGTTCGACCAGAAGAGACACGCCATGGCGGTCGCGGTGGCGACCGCGGCCGCCGCCGACGCCGCCGTGGCCGCGGCGCACGCCGCGGCCGCCGCCGTCCGCCTCTCCTCCCGCAAGGCGCACCAGCTGCCGGCGAGCGCCGTCGAGGAGGCGGCGGCTGTCAGGATTCAGGCCACCTTCAGAGGCTACCTGTCAAGAACAGCGCTGTGCGCGCTGAGGGGCATCGTGAAGTTGCAAGCTCTGGTGCGAGGCCAGCTCGTGAGGAAGCAGGCGACCGCCACGCTCCGCTGCATGCAGGCTCTCCTCGCGGCGCAGTCGCTGCTGCGCGCGCAGGCGCAGCGGGTGCGCGCGCTGCACTAACTCCACCGGACGCCGCCCAGGCCACTGCCGCCGTCGCCGCCGCAGCACCCGATGCACCTCCGATCCTACGAGATGGACAGGTCGTGCGACGAGAACTCCAAGATCGTGGAGGTGGACAGCGGCGCCGGCGAGCCGGC]

[+] EMBL CB658381             [AGAAGCGGTGGAGCTTCAGGCGACCGGTGCACGGCGAGAAGGCGGCGGCGGAGGCGGCGGCGGCGGCGGACGGCGTGGTGGTGGGCGAGGCCGAGGCGGGGTTTGATCTGTCCGCGTCGGAGTCGGAGTTCGACCAGAAGAGACACGCCATGGCGGTCGCGGTGGCGACCGCGGCCGCCGCCGACGCCGCCGTGGCCGCGGCGCACGCCGCGGCCGCCGCCGTCCGCCTCTCCTCCCGCAAGGCGCACCAGCTGCCGGCGAGCGCCGTCGAGGAGGCGGCGGCTGTCAGGATTCAGGCCACCTTCAGAGGCTACCTGTCAAGAACAGCGCTGTGCGCGCTGAGGGGCATCGTGAAGTTGCAAGCTCTGGTGCGAGGCCAGCTCGTGAGGAAGCAGGCGACCGCCACGCTCCGCTGCATGCAGGCTCTCCTCGCGGCGCAGTCGCTGCTGCGCGCGCAGGCGCAGCGGGTGCGCGCGCTGCACTAACTCCACCGGACGCCGCCCAGGCCACTGCCGCCGTCGCCGCCGCAGCACCCGATGCACCTCCGATCCTACGAGATGGACAGGTCGTGCGACGAGAACTCCAAGATCGTGGAGGTGGACAGCGGCGCCGGCGAGCCGGC]




>consensus_181#1
AGAAGCGGTGGAGCTTCAGGCGACCGGTGCACGGCGAGAAGGCGGCGGCGGAGGCGGCGG
CGGCGGCGGACGGCGTGGTGGTGGGCGAGGCCGAGGCGGGGTTTGATCTGTCCGCGTCGG
AGTCGGAGTTCGACCAGAAGAGACACGCCATGGCGGTCGCGGTGGCGACCGCGGCCGCCG
CCGACGCCGCCGTGGCCGCGGCGCACGCCGCGGCCGCCGCCGTCCGCCTCTCCTCCCGCA
AGGCGCACCAGCTGCCGGCGAGCGCCGTCGAGGAGGCGGCGGCTGTCAGGATTCAGGCCA
CCTTCAGAGGCTACCTGTCAAGAACAGCGCTGTGCGCGCTGAGGGGCATCGTGAAGTTGC
AAGCTCTGGTGCGAGGCCAGCTCGTGAGGAAGCAGGCGACCGCCACGCTCCGCTGCATGC
AGGCTCTCCTCGCGGCGCAGTCGCTGCTGCGCGCGCAGGCGCAGCGGGTGCGCGCGCTGC
ACTAACTCCACCGGACGCCGCCCAGGCCACTGCCGCCGTCGCCGCCGCAGCACCCGATGC
ACCTCCGATCCTACGAGATGGACAGGTCGTGCGACGAGAACTCCAAGATCGTGGAGGTGG
ACAGCGGCGCCGGCGAGCCGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_181#0      GCGATGCTGTTCAGGATCTATGCCATGTTCTTAGCAGTTTGTCCAAAAGCTTCACGTGGC 60
consensus_181#1      ------------------------------------------------------------
                                                                                 

consensus_181#0      TCTCTTCTTAATTCTTATTCAGCTCGCCACACTGTTGACTGAAAAATTGGAGCAGGCACT 120
consensus_181#1      ------------------------------------------AGAAGCGGTGGAG---CT 15
                                                               * **  ** * **   **

consensus_181#0      GCAGGTGATCGGTTAGGAGGGAGGAGG-AATGGGGAAGGCGG-GGAGATGGCTGAGGAGC 178
consensus_181#1      TCAGGCGACCGGTGCACGGCGAGAAGGCGGCGGCGGAGGCGGCGGCGGCGGCGGACGGCG 75
                      **** ** ****     * *** ***    ** * ****** ** *  *** ** *   

consensus_181#0      TTCT--TGGCCGGCGGCAAGAAGGGTGGCAAGAAGGGCGAGGCAATGGCGGCGGCTTTGC 236
consensus_181#1      TGGTGGTGGGCGAGGCCGAGGCGGGGTTTGATCTGTCCGCGTCGGAGTCGG-AGTTCGAC 134
                     *  *  *** **  * * **  ***     *   *  ** * *   * ***  * *   *

consensus_181#0      CCGGAGAGGCGGCGAAGGAGAAGCGGTGGAGCTTCAGGCGACCGGTGCACGGCGAGAAGG 296
consensus_181#1      CAGAAGAGAC----ACGCCATGGCGGTCGCGGT---GGCGACCGCGGC-CGCCG-----C 181
                     * * **** *    * *     ***** * * *   ********  ** ** **      

consensus_181#0      CGACGCCGCCGTGGCCGCGGCGCACGCCGCGGCCGCCGCCGTCCGCCTCTCCTCCCGCAA 356
consensus_181#1      CGACGCCGCCGTGGCCGCGGCGCACGCCGCGGCCGCCGCCGTCCGCCTCTCCTCCCGCAA 241
                     ************************************************************

consensus_181#0      GGCGCACCAGCTGCCGGCGAGCGCCGTCGAGGAGGCGGCGGCTGTCAAGATTCAGGCCAC 416
consensus_181#1      GGCGCACCAGCTGCCGGCGAGCGCCGTCGAGGAGGCGGCGGCTGTCAGGATTCAGGCCAC 301
                     *********************************************** ************

consensus_181#0      CTTCAGAGGCTACCTGGCAAGAACAGCGCTGTGCGCGCTGAGGGGCATCGTGAAGTTGCA 476
consensus_181#1      CTTCAGAGGCTACCTGTCAAGAACAGCGCTGTGCGCGCTGAGGGGCATCGTGAAGTTGCA 361
                     **************** *******************************************

consensus_181#0      AGCTCTGGTGCGAGGCCAGCTCGTGAGGAAGCAGGCGACCGCCACGCTCCGCTGCATGCA 536
consensus_181#1      AGCTCTGGTGCGAGGCCAGCTCGTGAGGAAGCAGGCGACCGCCACGCTCCGCTGCATGCA 421
                     ************************************************************

consensus_181#0      GGCTCTCCTCGCGGCGCAGTCGCAGCTGCGCGCGCAGGCGCAGCGGGTGCGCGCGCTGCA 596
consensus_181#1      GGCTCTCCTCGCGGCGCAGTCGCTGCTGCGCGCGCAGGCGCAGCGGGTGCGCGCGCTGCA 481
                     *********************** ************************************

consensus_181#0      CGAACACCACCGGACGCCGCCCAGGCCACGGCCGCCGTCGCCGCCGCAGCACCCGAGGCA 656
consensus_181#1      CTAACTCCACCGGACGCCGCCCAGGCCACTGCCGCCGTCGCCGCCGCAGCACCCGATGCA 541
                     * *** *********************** ************************** ***

consensus_181#0      CCGCCGATCCTACGAGATGGACAGGTCGTGCGAGGAGAACGCCAAGATCGTGGAGGTGGA 716
consensus_181#1      CCTCCGATCCTACGAGATGGACAGGTCGTGCGACGAGAACTCCAAGATCGTGGAGGTGGA 601
                     ** ****************************** ****** *******************

consensus_181#0      CAGCGGCGCCGGCGAGCCGGCGCGGCGCGGCGGCAAGTACGGC 759
consensus_181#1      CAGCGGCGCCGGCGAGCCGGC---------------------- 622
                     *********************