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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1811#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[TTTTTTTTTTTTTTTTTTGCCAAAAAAATATGGCCAAAATATGGGTAATTACCAAGAAAATTTTCTGTTGCTTGTCCATCAGAAGAGCTCATTGCTTCATTAATAACATAACAAACATAGAACACGTTTTATATTGCAACAATATTGGATAGGTAGAGCTCTAATTACATAGGTGCAGGGGCAGGGAAAATATGGTTGGGGTTCCAGCTGCTGGATAATCCTCCCCGATCCGAATTGGAGGGATTATTTACCACTCCCAAACCAGCCAACCTTATATAATTTATATTAAAGAAAATAAGCCAGTTGTACATGGAAGCGACGGCTAACGGATACGGCCTCCTGACGGTTGGAGCCCGTTTACTGATCCACAAAAACCTCCAGAATGCACGCGCCGTTGTCACAGGCCCAATCCACTGTGCGATTGACATAGACAAAACGATNAGTCCCACGTATATAACAATGAACACGATGGATTCTGCCGTCGAGGTTCTCATCACGGAACGGGAGGCCGAGAAGAACGCCAGGATTATTCTGATTAGCGAGACCCACATGCAGGGGAACGCCACCAGGAATTTCTTCCACAACCCGGTGGAGCGCGACGCCTTTCCTTATACCAGCAGGATCACGGGGATCACCGATATTCTACCGCTATGGCTTTGAGGACCACGGACCATCT]
[+] EMBL CA761320 [TTTTTTTTTTTTTTTTTTGCCAAAAAAATATGGCCAAAATATGGGTAATTACCAAGAAAATTTTCTGTTGCTTGTCCATCAGAAGAGCTCATTGCTTCATTAATAACATAACAAACATAGAACACGTTTTATATTGCAACAATATTGGATAGGTAGAGCTCTAATTACATAGGTGCAGGGGCAGGGAAAATATGGTTGGGGTTCCAGCTGCTGGATAATCCTCCCCGATCCGAATTGGAGGGATTATTTACCACTCCCAAACCAGCCAACCTTATATAATTTATATTAAAGAAAATAAGCCAGTTGTACATGGAAGCGACGGCTAACGGATACGGCCTCCTGACGGTTGGAGCCCGTTTACTGATCCACAAAAACCTCCAGAATGCACGCGCCGTTGTCACAGGCCCAATCCACTGTGCGATTGACATAGACAAAACGATNAGTCCCACGTATATAACAATGAACACGATGGATTCTGCCGTCGAGGTTCTCATCACGGAACGGGAGGCCGAGAAGAACGCCAGGATTATTCTGATTAGCGAGACCCACATGCAGGGGAACGCCACCAGGAATTTCTTCCACAACCCGGTGGAGCGCGACGCCTTTCCTTATACCAGCAGGATCACGGGGATCACCGATATTCTACCGCTATGGCTTTGAGGACCACGGACCATCT]
consensusID : consensus_1811#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 579 fasta sequence
[TTTTTTTGCAGAAAAATATGTCCAAGANNATGGTTAATTACCAAGTAAATTTTCTGTGCTTGTCCATCAGAAGAGCTCATGATCATTAATAACATAACAAAAATAGAACACGTAAAATATAAGAAAAATATTGTNTAGGTAGTGCTCTAATTACATAGGTGCAGGGGCAGGTGAGATATGGTTCGGGTTCCAGCGTGCTTGATAATCCTCCCCGATCCGAATTGGAGTGATTATGTACCACTCCCAAACCAGCAAACATTATATAAGTTATATGAAAGAAGAGAAGCCAGTTGTAGATGGAAGCGACGGCAAACGGATACTGCCTCCTGACGGTGTGAGCCCGGTGACTGAGCCACAAAAACCTCCAGAATGCACGCGCCGTCGTCACAGGTCCAATCCACTGTGCGACAAAGAGAGACAAAACGATGAGGCCCACGTAGATAACAATGTACACGATGGATTCTGCGTCGAGGTTCTCATCACGGCNCGGGAGGCCGCGAAGAAGGCAGGATTAGGCTGACGAGCGAGACCCAGATGCAGTGCAACGCCGCCAGAAGCTCTTCCACGAACCGGGGGAGC]
[-] EMBL BM038225 [TTTTTTTGCAGAAAAATATGTCCAAGANNATGGTTAATTACCAAGTAAATTTTCTGTGCTTGTCCATCAGAAGAGCTCATGATCATTAATAACATAACAAAAATAGAACACGTAAAATATAAGAAAAATATTGTNTAGGTAGTGCTCTAATTACATAGGTGCAGGGGCAGGTGAGATATGGTTCGGGTTCCAGCGTGCTTGATAATCCTCCCCGATCCGAATTGGAGTGATTATGTACCACTCCCAAACCAGCAAACATTATATAAGTTATATGAAAGAAGAGAAGCCAGTTGTAGATGGAAGCGACGGCAAACGGATACTGCCTCCTGACGGTGTGAGCCCGGTGACTGAGCCACAAAAACCTCCAGAATGCACGCGCCGTCGTCACAGGTCCAATCCACTGTGCGACAAAGAGAGACAAAACGATGAGGCCCACGTAGATAACAATGTACACGATGGATTCTGCGTCGAGGTTCTCATCACGGCNCGGGAGGCCGCGAAGAAGGCAGGATTAGGCTGACGAGCGAGACCCAGATGCAGTGCAACGCCGCCAGAAGCTCTTCCACGAACCGGGGGAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1811#0 TTTTTTTTTTTTTTTTTTGCCAAAAAAATATGGCCAA-AATATGGGTAATTACCAAGAAA 59
consensus_1811#1 -----------TTTTTTTGC-AGAAAAATATGTCCAAGANNATGGTTAATTACCAAGTAA 48
********* * ********* **** * **** *********** **
consensus_1811#0 ATTTTCTGTTGCTTGTCCATCAGAAGAGCTCATTGCTTCATTAATAACATAACAAACATA 119
consensus_1811#1 ATTTTCTGT-GCTTGTCCATCAGAAGAGCTCATGA--TCATTAATAACATAACAAAAATA 105
********* *********************** ******************* ***
consensus_1811#0 GAACACGTTTTATATTGCAACAATATTGGATAGGTAGAGCTCTAATTACATAGGTGCAGG 179
consensus_1811#1 GAACACGTAAAATATAAGAAAAATATTGTNTAGGTAGTGCTCTAATTACATAGGTGCAGG 165
******** **** ** ******* ******* **********************
consensus_1811#0 GGCAGGGAAAATATGGTTGGGGTTCCAGC-TGCTGGATAATCCTCCCCGATCCGAATTGG 238
consensus_1811#1 GGCAGGTGAGATATGGTTCGGGTTCCAGCGTGCTTGATAATCCTCCCCGATCCGAATTGG 225
****** * ******** ********** **** *************************
consensus_1811#0 AGGGATTATTTACCACTCCCAAACCAGCCAACCTTATATAATTTATATTAAAGAAAATAA 298
consensus_1811#1 AGTGATTATGTACCACTCCCAAACCAGCAAACATTATATAAGTTATATGAAAGAAGAGAA 285
** ****** ****************** *** ******** ****** ****** * **
consensus_1811#0 GCCAGTTGTACATGGAAGCGACGGCTAACGGATACGGCCTCCTGACGGTTGGAGCCCGTT 358
consensus_1811#1 GCCAGTTGTAGATGGAAGCGACGGCAAACGGATACTGCCTCCTGACGGTGTGAGCCCGGT 345
********** ************** ********* ************* ******* *
consensus_1811#0 TACTGATCCACAAAAACCTCCAGAATGCACGCGCCGTTGTCACAGGCCCAATCCACTGTG 418
consensus_1811#1 GACTGAGCCACAAAAACCTCCAGAATGCACGCGCCGTCGTCACAGGTCCAATCCACTGTG 405
***** ****************************** ******** *************
consensus_1811#0 CGATTGACATAGACAAAACGATNAGTCCCACGTATATAACAATGAACACGATGGATTCTG 478
consensus_1811#1 CGACAAAGAGAGACAAAACGATGAGGCCCACGTAGATAACAATGTACACGATGGATTCTG 465
*** * * ************ ** ******** ********* ***************
consensus_1811#0 CCGTCGAGGTTCTCATCACGGAACGGGAGGCCGAGAAGAACGCCAGGATTATTCTGATTA 538
consensus_1811#1 C-GTCGAGGTTCTCATCACGGCNCGGGAGGCCGCGAAGAA-GGCAGGATTAGGCTGACGA 523
* ******************* ********** ****** * ******** **** *
consensus_1811#0 GCGAGACCCACATGCAGGGGAACGCCACCAGGAATTTCTTCCACAACCCGGTGGAGCGCG 598
consensus_1811#1 GCGAGACCCAGATGCAGTGCAACGCCGCCAG-AAGCTCTTCCACGAACCGGGGGAGC--- 579
********** ****** * ****** **** ** ******** * **** *****
consensus_1811#0 ACGCCTTTCCTTATACCAGCAGGATCACGGGGATCACCGATATTCTACCGCTATGGCTTT 658
consensus_1811#1 ------------------------------------------------------------
consensus_1811#0 GAGGACCACGGACCATCT 676
consensus_1811#1 ------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||