cluster # 1812

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Oryza sativa
cluster # 1812 cluster # 1812 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1812#0 length = 339 sequences # 1

consensus_1812#1 length = 275 sequences # 1

consensusID : consensus_1812#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 339
fasta sequence

                              [ACATTATTCTCCCAAAATTCGTTTGTCACGGGGCAAGCTTCACGCGTGCTGGCGCCGGCAGTCGTCGTAGCCGAGCCACCGCCACCGCCGGCCGTCGTCCTCGTCGACGAGCGAACGTCGCCCCTCCGCAGCTACCGCCAAGCCGCCACCGGTGGTCCTCCTCGTCACCGAGCCAACGCCGCCCGTCGTCGCCAGCGGCAGCCCTCCTCGTCGTCGAGCAGCTGCCCCTCCACCGCCGCTCCTCCGCATCCACCGCCAGCGGCGACCCTCCGCGTCGCGCCGCCAAGCCGCCGCTCCTCCGCAGCCGCAGCTACCGCCGGCCCTCCTCGTCGCCGAGTC]

[+] EMBL AK062331             [ACATTATTCTCCCAAAATTCGTTTGTCACGGGGCAAGCTTCACGCGTGCTGGCGCCGGCAGTCGTCGTAGCCGAGCCACCGCCACCGCCGGCCGTCGTCCTCGTCGACGAGCGAACGTCGCCCCTCCGCAGCTACCGCCAAGCCGCCACCGGTGGTCCTCCTCGTCACCGAGCCAACGCCGCCCGTCGTCGCCAGCGGCAGCCCTCCTCGTCGTCGAGCAGCTGCCCCTCCACCGCCGCTCCTCCGCATCCACCGCCAGCGGCGACCCTCCGCGTCGCGCCGCCAAGCCGCCGCTCCTCCGCAGCCGCAGCTACCGCCGGCCCTCCTCGTCGCCGAGTC]




>consensus_1812#0
ACATTATTCTCCCAAAATTCGTTTGTCACGGGGCAAGCTTCACGCGTGCTGGCGCCGGCA
GTCGTCGTAGCCGAGCCACCGCCACCGCCGGCCGTCGTCCTCGTCGACGAGCGAACGTCG
CCCCTCCGCAGCTACCGCCAAGCCGCCACCGGTGGTCCTCCTCGTCACCGAGCCAACGCC
GCCCGTCGTCGCCAGCGGCAGCCCTCCTCGTCGTCGAGCAGCTGCCCCTCCACCGCCGCT
CCTCCGCATCCACCGCCAGCGGCGACCCTCCGCGTCGCGCCGCCAAGCCGCCGCTCCTCC
GCAGCCGCAGCTACCGCCGGCCCTCCTCGTCGCCGAGTC

consensusID : consensus_1812#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 275
fasta sequence

                              [CGGCCGTCCTCCTCGTCGACGAGCCGACGTCGCCCCTCTGCAGCTACCGCCGAGCCAGCGCCGCCGTCGTCGGTCGTCTTCCTCGTCGCCGAGCCGACACCGCCCCTCCGCAGCTGCAGCCACCGCTCGTTCGCCGCCAGCGGCCGCCCTCCTCGTCACCGAGCCAACGCCGCCCGTCGTCGCCAGCGGTAGCCCTCCTCGTCGCCGAGCCGCCGCCTCTCCTCCTCCGCCGGCAGCGGCGGCCTTCCTCGTCGCCGAGCGGCCGCTGCCCCTCC]

[+] EMBL AK111032             [CGGCCGTCCTCCTCGTCGACGAGCCGACGTCGCCCCTCTGCAGCTACCGCCGAGCCAGCGCCGCCGTCGTCGGTCGTCTTCCTCGTCGCCGAGCCGACACCGCCCCTCCGCAGCTGCAGCCACCGCTCGTTCGCCGCCAGCGGCCGCCCTCCTCGTCACCGAGCCAACGCCGCCCGTCGTCGCCAGCGGTAGCCCTCCTCGTCGCCGAGCCGCCGCCTCTCCTCCTCCGCCGGCAGCGGCGGCCTTCCTCGTCGCCGAGCGGCCGCTGCCCCTCC]




>consensus_1812#1
CGGCCGTCCTCCTCGTCGACGAGCCGACGTCGCCCCTCTGCAGCTACCGCCGAGCCAGCG
CCGCCGTCGTCGGTCGTCTTCCTCGTCGCCGAGCCGACACCGCCCCTCCGCAGCTGCAGC
CACCGCTCGTTCGCCGCCAGCGGCCGCCCTCCTCGTCACCGAGCCAACGCCGCCCGTCGT
CGCCAGCGGTAGCCCTCCTCGTCGCCGAGCCGCCGCCTCTCCTCCTCCGCCGGCAGCGGC
GGCCTTCCTCGTCGCCGAGCGGCCGCTGCCCCTCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1812#0      ACATTATTCTCCCAAAATTCGTTTGTCACGGGGCAAGCTTCACGCGTGCTGGCGCCGGCA 60
consensus_1812#1      --------CGGCCGTCCTCC--TCGTCGACGAGCCGACGTCGCCCCT-CTG----CAGCT 45
                              *  **    * *  * ***   * **   * ** * * * ***    * ** 

consensus_1812#0      GTCGTCGTAGCCGAGCCACCGCCACCGCCGGCCGTCGTCCTCGTCGACGAGCGAACGTCG 120
consensus_1812#1      ACCGCCG-AGCCAG--CGCCGCCGTCGTCGGTCGTCTTCCTCGTCGCCGAGCCGACACCG 102
                        ** ** ****    * *****  ** *** **** ********* *****  **  **

consensus_1812#0      CCCCTCCGCAGCTACCGCCAA---------GCCGCCACCGGTGGTCCTCCTCGTCACCGA 171
consensus_1812#1      CCCCTCCGCAGCTGCAGCCACCGCTCGTTCGCCGCCAGCGGCCGCCCTCCTCGTCACCGA 162
                      ************* * ****          ******* ***  * ***************

consensus_1812#0      GCCAACGCCGCCCGTCGTCGCCAGCGGCAGCCCTCCTCGTCGTCGAGCAGCTGCCCCTCC 231
consensus_1812#1      GCCAACGCCGCCCGTCGTCGCCAGCGGTAGCCCTCCTCGTCGCCGAG------------- 209
                      *************************** ************** ****             

consensus_1812#0      ACCGCCGCTCCTCCGCATCCACCGCCAGCGGCGACCCTCCGCGTCGCGCCGCCAAGCCGC 291
consensus_1812#1      -CCGCCGCCTCTCCTCCTCCGCCGGCAGCGGCGGCCTTCCTCGTCGC--CGAGCGGCCGC 266
                       *******  **** * *** *** ******** ** *** ******  **    *****

consensus_1812#0      CGCTCCTCCGCAGCCGCAGCTACCGCCGGCCCTCCTCGTCGCCGAGTC 339
consensus_1812#1      TGCCCCTCC--------------------------------------- 275
                       ** *****