These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1824#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence [TTTTTTTTTTTTTTTTTTGGGAAAGAATGGCTATTTCTTTTCAAGAAACAACTCAAGGAGAAGACAAGGCCTTACCCAAATCAATATACCTTCCACAGCGTATTTTCGAAAAAAAAATACACATTCCACAGCCAGCCACAAGCGAACAAAGAATGCAAACGGGGTAAATACAGATGACTCACAAACACTAACCTTTCAGTATTCTCAGCTCCCAAAAGCATAGGTTACTTTGAAACAGTCAATATTGCACAACTTGACGGATGTCACCGACCTCATCATCCCTCCAAAACGATCGATGCTTCTCCGTGGTCTATCAGGTTGATCCACACTAGCCCTTGGCTTATCAGGATGATCTACACTCTTTCTGCTTTTATCTCTCCAATCTATGCTTCCTCTTGGTTTTTCCCGCCTATCAACGCTATGCCTGTGATCAATGCTTGACCTAGATTTATCCTTTACATCCGGGCTTTTTCTTGAGCTCTGCATACTTTCTGATCCTATTTCACAAGGATCTGAAGGACCTGAGCTCCCTGAGGATTCATCTTTTGTAGGGGGTAATTTCTCAATGGCCATGACAAACTTTTTTAGGGGCCTGGATGGATTCTGGATATAGTTCCAGATTACAATGGTTTCCACCTTTGACCCCCAGAGGCTCATACTTTATTTTAAAGA] [+] EMBL CA762262 [TTTTTTTTTTTTTTTTTTGGGAAAGAATGGCTATTTCTTTTCAAGAAACAACTCAAGGAGAAGACAAGGCCTTACCCAAATCAATATACCTTCCACAGCGTATTTTCGAAAAAAAAATACACATTCCACAGCCAGCCACAAGCGAACAAAGAATGCAAACGGGGTAAATACAGATGACTCACAAACACTAACCTTTCAGTATTCTCAGCTCCCAAAAGCATAGGTTACTTTGAAACAGTCAATATTGCACAACTTGACGGATGTCACCGACCTCATCATCCCTCCAAAACGATCGATGCTTCTCCGTGGTCTATCAGGTTGATCCACACTAGCCCTTGGCTTATCAGGATGATCTACACTCTTTCTGCTTTTATCTCTCCAATCTATGCTTCCTCTTGGTTTTTCCCGCCTATCAACGCTATGCCTGTGATCAATGCTTGACCTAGATTTATCCTTTACATCCGGGCTTTTTCTTGAGCTCTGCATACTTTCTGATCCTATTTCACAAGGATCTGAAGGACCTGAGCTCCCTGAGGATTCATCTTTTGTAGGGGGTAATTTCTCAATGGCCATGACAAACTTTTTTAGGGGCCTGGATGGATTCTGGATATAGTTCCAGATTACAATGGTTTCCACCTTTGACCCCCAGAGGCTCATACTTTATTTTAAAGA] consensusID : consensus_1824#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [TTTGTGGTGGGGTGGGGGGNNNGGNNGGNNGNGNNTTTTNTTNTTTTTAAAACTCGCGAGAGGGACAAAAAAATTCCACAGTTTTGTTAGAATCACATCTTTGAAATGTTCCCNGTGTGAAAGAAAAACTGGCCAGTATAATGATACACCAATATGTACATGACATCTATGTAAGAACGGTGCTCCTTAGTGCTCCACGGCAGTGTCGTTCTTGAACTCAACAAAAGAATGGTACTCCAAAAACTCAAAAGGGTTGGGAAAGAATGGCTATTTCTTTTCAAGAAACAACTCAAGGAGAAGACAAGGCCTTACCCAAATCAATATACCTTCCACAGCGTATTTCCGAAAAAAAAATACACATTCCACAGCCAGCCACAAACGAACAAAGAATGCAAACGGGGTAAATACAGATGACTCACAAACACTAACCTTTCAGTATTCTCAGCTCCCAGAAGCATAGGTTACTTTGAAACAGTCAATATTGCACAACTTGACGGATGTCACCGACCTCATCATCCCTCCAAAACGATCGATGCTTCTCCGTGGTCTATCAGGTTGACTCGTGCCGAATTCTGCAGCCCGGAGA] [-] EMBL CA756504 [TTTGTGGTGGGGTGGGGGGNNNGGNNGGNNGNGNNTTTTNTTNTTTTTAAAACTCGCGAGAGGGACAAAAAAATTCCACAGTTTTGTTAGAATCACATCTTTGAAATGTTCCCNGTGTGAAAGAAAAACTGGCCAGTATAATGATACACCAATATGTACATGACATCTATGTAAGAACGGTGCTCCTTAGTGCTCCACGGCAGTGTCGTTCTTGAACTCAACAAAAGAATGGTACTCCAAAAACTCAAAAGGGTTGGGAAAGAATGGCTATTTCTTTTCAAGAAACAACTCAAGGAGAAGACAAGGCCTTACCCAAATCAATATACCTTCCACAGCGTATTTCCGAAAAAAAAATACACATTCCACAGCCAGCCACAAACGAACAAAGAATGCAAACGGGGTAAATACAGATGACTCACAAACACTAACCTTTCAGTATTCTCAGCTCCCAGAAGCATAGGTTACTTTGAAACAGTCAATATTGCACAACTTGACGGATGTCACCGACCTCATCATCCCTCCAAAACGATCGATGCTTCTCCGTGGTCTATCAGGTTGACTCGTGCCGAATTCTGCAGCCCGGAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1824#0 ------------------------------------------------------------ consensus_1824#1 TTTGTGGTGGGGTGGGGGGNNNGGNNGGNNGNGNNTTTTNTTNTTTTTAAAACTCGCGAG 60 consensus_1824#0 ------------------------------------------------------------ consensus_1824#1 AGGGACAAAAAAATTCCACAGTTTTGTTAGAATCACATCTTTGAAATGTTCCCNGTGTGA 120 consensus_1824#0 ------------------------------------------------------------ consensus_1824#1 AAGAAAAACTGGCCAGTATAATGATACACCAATATGTACATGACATCTATGTAAGAACGG 180 consensus_1824#0 ---------------------------------------------------------TTT 3 consensus_1824#1 TGCTCCTTAGTGCTCCACGGCAGTGTCGTTCTTGAACTCAACAAAAGAATGGTACTCCAA 240 consensus_1824#0 TTTTTTTTTTTTTTTGGGAAAGAATGGCTATTTCTTTTCAAGAAACAACTCAAGGAGAAG 63 consensus_1824#1 AAACTCAAAAGGGTTGGGAAAGAATGGCTATTTCTTTTCAAGAAACAACTCAAGGAGAAG 300 * *********************************************** consensus_1824#0 ACAAGGCCTTACCCAAATCAATATACCTTCCACAGCGTATTTTCGAAAAAAAAATACACA 123 consensus_1824#1 ACAAGGCCTTACCCAAATCAATATACCTTCCACAGCGTATTTCCGAAAAAAAAATACACA 360 ****************************************** ***************** consensus_1824#0 TTCCACAGCCAGCCACAAGCGAACAAAGAATGCAAACGGGGTAAATACAGATGACTCACA 183 consensus_1824#1 TTCCACAGCCAGCCACAAACGAACAAAGAATGCAAACGGGGTAAATACAGATGACTCACA 420 ****************** ***************************************** consensus_1824#0 AACACTAACCTTTCAGTATTCTCAGCTCCCAAAAGCATAGGTTACTTTGAAACAGTCAAT 243 consensus_1824#1 AACACTAACCTTTCAGTATTCTCAGCTCCCAGAAGCATAGGTTACTTTGAAACAGTCAAT 480 ******************************* **************************** consensus_1824#0 ATTGCACAACTTGACGGATGTCACCGACCTCATCATCCCTCCAAAACGATCGATGCTTCT 303 consensus_1824#1 ATTGCACAACTTGACGGATGTCACCGACCTCATCATCCCTCCAAAACGATCGATGCTTCT 540 ************************************************************ consensus_1824#0 CCGTGGTCTATCAGGTTGATCCACACTAGCCCTTGGCTTATCAGGATGATCTACACTCTT 363 consensus_1824#1 CCGTGGTCTATCAGGTTGACTCGTGCCGAATTCTGCAGCCCGGAGA-------------- 586 ******************* * * ** ** consensus_1824#0 TCTGCTTTTATCTCTCCAATCTATGCTTCCTCTTGGTTTTTCCCGCCTATCAACGCTATG 423 consensus_1824#1 ------------------------------------------------------------ consensus_1824#0 CCTGTGATCAATGCTTGACCTAGATTTATCCTTTACATCCGGGCTTTTTCTTGAGCTCTG 483 consensus_1824#1 ------------------------------------------------------------ consensus_1824#0 CATACTTTCTGATCCTATTTCACAAGGATCTGAAGGACCTGAGCTCCCTGAGGATTCATC 543 consensus_1824#1 ------------------------------------------------------------ consensus_1824#0 TTTTGTAGGGGGTAATTTCTCAATGGCCATGACAAACTTTTTTAGGGGCCTGGATGGATT 603 consensus_1824#1 ------------------------------------------------------------ consensus_1824#0 CTGGATATAGTTCCAGATTACAATGGTTTCCACCTTTGACCCCCAGAGGCTCATACTTTA 663 consensus_1824#1 ------------------------------------------------------------ consensus_1824#0 TTTTAAAGA 672 consensus_1824#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||