cluster # 1830

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Oryza sativa
cluster # 1830 cluster # 1830 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1830#0 length = 599 sequences # 1

consensus_1830#1 length = 391 sequences # 1

consensusID : consensus_1830#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence

                              [ATTTAAGTGTGAGAGCACATATGGCGCTGGTGAAGATTGGGCAGTGGGGTGGAAATGGAGGGTCCGCTCAGGACATCAGTGTGCCACCCTGCAAACTCACTAGCGTGACTATTCGCAGTGGACAAGCGATTGATGCTATCACCTTCTCCTACGTGGGAATGGATGGACTGGAGCATGTGGTTGGTCCATGGGGTGGTCCTGGCGGAAGCCCTACTACGTTCAAGATTGGCCCTACAGAGCGTGTGAAGGAATTCTCTGGAACCCATGGCCCGTTTGGAACCTTGGCCGACATTGTGACATACCTGAAGATCGTCACCGATGCTACAACGTATGAGCTGGGTGTGAAGAGTGGAACACCCTTCAATGTTCCGCTGCAGGGCAACGCCACTGTTGTTGGTTTCTTTGGACGCTCTGGAGCACTCCTTGATGCAGTTGGCGTCTACATCCGCCCATGATGATCCTGGGCACGCTACGCCTACTTATATACTTTCTCCGTTTCTAATTATTTGACGCGATTGACCTTTNNTTAACATATTTACCATTCGTCTTATTAAAAAAATTAAGTAATTATAAATTCTTTTTCTATTATTTGATTTATT]

[+] EMBL CA756459             [ATTTAAGTGTGAGAGCACATATGGCGCTGGTGAAGATTGGGCAGTGGGGTGGAAATGGAGGGTCCGCTCAGGACATCAGTGTGCCACCCTGCAAACTCACTAGCGTGACTATTCGCAGTGGACAAGCGATTGATGCTATCACCTTCTCCTACGTGGGAATGGATGGACTGGAGCATGTGGTTGGTCCATGGGGTGGTCCTGGCGGAAGCCCTACTACGTTCAAGATTGGCCCTACAGAGCGTGTGAAGGAATTCTCTGGAACCCATGGCCCGTTTGGAACCTTGGCCGACATTGTGACATACCTGAAGATCGTCACCGATGCTACAACGTATGAGCTGGGTGTGAAGAGTGGAACACCCTTCAATGTTCCGCTGCAGGGCAACGCCACTGTTGTTGGTTTCTTTGGACGCTCTGGAGCACTCCTTGATGCAGTTGGCGTCTACATCCGCCCATGATGATCCTGGGCACGCTACGCCTACTTATATACTTTCTCCGTTTCTAATTATTTGACGCGATTGACCTTTNNTTAACATATTTACCATTCGTCTTATTAAAAAAATTAAGTAATTATAAATTCTTTTTCTATTATTTGATTTATT]




>consensus_1830#0
ATTTAAGTGTGAGAGCACATATGGCGCTGGTGAAGATTGGGCAGTGGGGTGGAAATGGAG
GGTCCGCTCAGGACATCAGTGTGCCACCCTGCAAACTCACTAGCGTGACTATTCGCAGTG
GACAAGCGATTGATGCTATCACCTTCTCCTACGTGGGAATGGATGGACTGGAGCATGTGG
TTGGTCCATGGGGTGGTCCTGGCGGAAGCCCTACTACGTTCAAGATTGGCCCTACAGAGC
GTGTGAAGGAATTCTCTGGAACCCATGGCCCGTTTGGAACCTTGGCCGACATTGTGACAT
ACCTGAAGATCGTCACCGATGCTACAACGTATGAGCTGGGTGTGAAGAGTGGAACACCCT
TCAATGTTCCGCTGCAGGGCAACGCCACTGTTGTTGGTTTCTTTGGACGCTCTGGAGCAC
TCCTTGATGCAGTTGGCGTCTACATCCGCCCATGATGATCCTGGGCACGCTACGCCTACT
TATATACTTTCTCCGTTTCTAATTATTTGACGCGATTGACCTTTNNTTAACATATTTACC
ATTCGTCTTATTAAAAAAATTAAGTAATTATAAATTCTTTTTCTATTATTTGATTTATT

consensusID : consensus_1830#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 391
fasta sequence

                              [ATCAGATTCTGTATACGGCATTAGTTGGTGATTAGTGACCACATTCTAGCGTACAATAGTTTTCTTTAGCTTCCGCTGCAATAACATAAAAGCCAAAACATGACAGCCAATCTAGCATACCATGCATGCAACTAAATCAAATCATCTTCTCGCAATTTCAGTTCAAGATTGGCCCTACAGAGCGTGTGAAGGAATTCTCTGGAACCCATGGCCCGTTTGGAACCTTGGCCGACATTGTGACATACCTGAAGATCGTCACCGATGCTACAACGTATGAGCTGGGTGTGAAGAGTGGAACACCCTTCAATGTTCCGCTGCAGGGCAACGCCACTGTTGTTGGTTTCTTTGGACGCTCTGGAGCACTCCTTGATGCAGTTGGCGTCTACATCCG]

[-] EMBL CF314859             [ATCAGATTCTGTATACGGCATTAGTTGGTGATTAGTGACCACATTCTAGCGTACAATAGTTTTCTTTAGCTTCCGCTGCAATAACATAAAAGCCAAAACATGACAGCCAATCTAGCATACCATGCATGCAACTAAATCAAATCATCTTCTCGCAATTTCAGTTCAAGATTGGCCCTACAGAGCGTGTGAAGGAATTCTCTGGAACCCATGGCCCGTTTGGAACCTTGGCCGACATTGTGACATACCTGAAGATCGTCACCGATGCTACAACGTATGAGCTGGGTGTGAAGAGTGGAACACCCTTCAATGTTCCGCTGCAGGGCAACGCCACTGTTGTTGGTTTCTTTGGACGCTCTGGAGCACTCCTTGATGCAGTTGGCGTCTACATCCG]




>consensus_1830#1
ATCAGATTCTGTATACGGCATTAGTTGGTGATTAGTGACCACATTCTAGCGTACAATAGT
TTTCTTTAGCTTCCGCTGCAATAACATAAAAGCCAAAACATGACAGCCAATCTAGCATAC
CATGCATGCAACTAAATCAAATCATCTTCTCGCAATTTCAGTTCAAGATTGGCCCTACAG
AGCGTGTGAAGGAATTCTCTGGAACCCATGGCCCGTTTGGAACCTTGGCCGACATTGTGA
CATACCTGAAGATCGTCACCGATGCTACAACGTATGAGCTGGGTGTGAAGAGTGGAACAC
CCTTCAATGTTCCGCTGCAGGGCAACGCCACTGTTGTTGGTTTCTTTGGACGCTCTGGAG
CACTCCTTGATGCAGTTGGCGTCTACATCCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1830#0      ATTTAAGTGTGAGAGCACATATGGCGCTGGTGAAGATTGGGCAGTGGGGTGGAAATGGAG 60
consensus_1830#1      ------------------------------------------------------ATC-AG 5
                                                                            **  **

consensus_1830#0      GGTCCGCTCAGGACATCAGTGTGCCACCC-TGCAAACTCACTAGCGTG-ACTATTCGCAG 118
consensus_1830#1      ATTCTGTATACGGCATTAGTTGGTGATTAGTGACCACATTCTAGCGTACAATAGTTTTCT 65
                        ** *   * * *** ***  *  *    **   **   *******  * ** *     

consensus_1830#0      TGGACAAGCGAT-TGATGCTATCACCTTCTCCTACGTGGGAATGGATGGACTGGAGCATG 177
consensus_1830#1      TTAGCTTCCGCTGCAATAACATAAAAGCCAAA-ACATGACAGCCAATCTAGCATACCATG 124
                      *   *   ** *   **   ** *    *    ** **  *    **  *    * ****

consensus_1830#0      TG-GTTGGTCCATGGGGTGGTCCTGGCGGAAGCCCTACTACGTTCAAGATTGGCCCTACA 236
consensus_1830#1      CATGCAACTAAATCAAATCATCTTCTCGCAATTTCA-----GTTCAAGATTGGCCCTACA 179
                         *    *  **    *  ** *  ** **   *      *******************

consensus_1830#0      GAGCGTGTGAAGGAATTCTCTGGAACCCATGGCCCGTTTGGAACCTTGGCCGACATTGTG 296
consensus_1830#1      GAGCGTGTGAAGGAATTCTCTGGAACCCATGGCCCGTTTGGAACCTTGGCCGACATTGTG 239
                      ************************************************************

consensus_1830#0      ACATACCTGAAGATCGTCACCGATGCTACAACGTATGAGCTGGGTGTGAAGAGTGGAACA 356
consensus_1830#1      ACATACCTGAAGATCGTCACCGATGCTACAACGTATGAGCTGGGTGTGAAGAGTGGAACA 299
                      ************************************************************

consensus_1830#0      CCCTTCAATGTTCCGCTGCAGGGCAACGCCACTGTTGTTGGTTTCTTTGGACGCTCTGGA 416
consensus_1830#1      CCCTTCAATGTTCCGCTGCAGGGCAACGCCACTGTTGTTGGTTTCTTTGGACGCTCTGGA 359
                      ************************************************************

consensus_1830#0      GCACTCCTTGATGCAGTTGGCGTCTACATCCGCCCATGATGATCCTGGGCACGCTACGCC 476
consensus_1830#1      GCACTCCTTGATGCAGTTGGCGTCTACATCCG---------------------------- 391
                      ********************************                            

consensus_1830#0      TACTTATATACTTTCTCCGTTTCTAATTATTTGACGCGATTGACCTTTNNTTAACATATT 536
consensus_1830#1      ------------------------------------------------------------
                                                                                  

consensus_1830#0      TACCATTCGTCTTATTAAAAAAATTAAGTAATTATAAATTCTTTTTCTATTATTTGATTT 596
consensus_1830#1      ------------------------------------------------------------
                                                                                  

consensus_1830#0      ATT 599
consensus_1830#1      ---