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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2213 fasta sequence
[ACGAGGCAGGAAAGAAACCCCAAACCCGCGTCGCCGACGCCGTCGCCGGCACACTCGCCTTCGCCTCGCCCACCACCAAACCACCTCCGATGGCGCCCGGCTCCTCCTCCACCTCCTCCCCGGGAGGAAAAGCCGCCGCGGTGGGCGGCGAGGCGGGGAAGGAGGGCGGAGCCGTGCCCTCGCCCGCGGCAGCTGCCTCCGACCACGCTCCGGTGGCGCCCGACGGCTCGCCGGGAGGTGGCGCGCTGCCGGCGGGCGGCGAAGCGGGGAAGGAGGACGAGGGCGTCGCCTCGACCGGCTCCCGCACTCCGCTGGCCCCTGGCTCCTCCTCGGGAGAAGGCGCGCTCGGGGAATGCGGCGAGGCGAGGAACGACGACGAAGCGCCAGCGCCAGCGCCACGGCTCATCGCCTCGCCCACCGCCGCCGCCGCCGCCGCCGCCACCACTGACTACCCACATGAAGGCGGCGAGGCGGAGCAGGAGGGCGGCAACGCGTCATCACCATGTGAAGAGCAGGAAGAGGATGACGACGACGACGAGGAGGAGGAGGCCCCGACGCATCTCCCCTTCGCACCCTCGTCGGAATCGGAGTTACCTGATGATAAGTCAACAGTTGATCCCAGCTTCACCATCTCTCTCATAAGGAAGCTGGTACCTCAGGGACCAGATGTGGATAAAGAGTTAAGTGTGAAGCAGGGACGAACAGAAGAAAAGGATGCTAGTTCTGATGTTGGGGAACCAAAACAGCCTCATGACAAAGATCTGTGGGACAATGAAGGTTGCAAACTGTGGGACCTTTCAGTTATTGAACCTCAGGCAGAACTTATGGTTAACAACCTTGTACTTGAAGTACTTTTGGCAAACCTTCATGTGAGACAATTTCTTCGAGCAAAGGAAATCTGTATTGGGATCATAGGAAACTTAGCTTGTCATAAATCTCTGGCCAATGCAATCACTTCTCATAATGGATTAATTGCTACTGTCGTGGATCAGTTATTTCTTGATGACCCTGGTTGCCTTACTGAAACATTCAGGTTATTGAGCACCATTTTTCAGAGCAACGCATCTATGTCATGGGCTGAAGCTCTCTTACCTGATGAGATTCTTTCACGTATTATGTGGATAATTGGAAACACAGTGCATGCTACCTTACTTCAGAAGATACTGGAGTTTCTATCAGCTCTTGTTGATGATCAAGATGTCATTACCATTCTTATCGAGCCCTTGATAAAAGTGGGTTTAGTTGACTGTGCTATTGGTTTGCTATTAAATGAGCTTGAAAAATCAATGGATGGGAACAATCTAGACAGGTCAGATTCTCTTGATTCAATCCTTCGACTTATTGAAGAACTGTCCGCCATAGACAACTGTTCAAAAGTAATGTCATCAAATGACCAATTGATTAAAGCACTAAGTAATATAGTCAAGTTACCAGATAAATTTGAGGTTGAGGGCTATTGTGCTTCTGTGGTAATCATAATAGCAAATGTTTTGTCTGATGGAGAACATCTCACACCTATTCTGTCCCATGATTTACCCTTACTGGAGGGCCTATTTGACATTCTTCCATTGATCTCTGATGATAATGAAGCTCGAAATGCATTTTGGTGTATCTTGACACGTTTACTGCAACAAGTAGAAGAAGGAGAAACCATCACGAACTCTTCAAAACTCGAGCAGTTTGTGTCTATCTTCTTGGCTAAGTTCACCCTCATGAAAGATGACATTGAAAGACATGGGATTCAAACAGAAGCTGATTCCTCAGTTGAGGGTGTTTCTTTGAAGAATGGGCTACGCACATCTCTCAAGGCGATCTGCAGTATCACGGAGAGATGGATTGCGGACAAGTCCTCCTTGGGCAAAGAAGATGCTTCACTGACCGAAAACACCATTGAAAATGCTAAAGAGCTGCTGACTTTCTGCCGGCGTGCAATGGGTATTGCTGACCTGTGAGTTTGGAATACGGAGGTTTTGACGTAGAGGGCAACCACGTACGTGAAAAATTACTAGGAGTTTTGCTGTATAGCACGAGATCATCCGGAAGTCTGTTAAAACCAACTAGGAGTTTTGCTGTAGAGGATCACAGTGATGCATAGATCATCAGTTGCTAAAGTAGATCACTACTCACATAGCTCTGCCAATTTACATTGATGTGGTTACATTATTGGTGCTAGCGATGTAATGAACGCGCATAAAAATGATACGGTGCTAGAG]
[+] EMBL AK120860 [ACGAGGCAGGAAAGAAACCCCAAACCCGCGTCGCCGACGCCGTCGCCGGCACACTCGCCTTCGCCTCGCCCACCACCAAACCACCTCCGATGGCGCCCGGCTCCTCCTCCACCTCCTCCCCGGGAGGAAAAGCCGCCGCGGTGGGCGGCGAGGCGGGGAAGGAGGGCGGAGCCGTGCCCTCGCCCGCGGCAGCTGCCTCCGACCACGCTCCGGTGGCGCCCGACGGCTCGCCGGGAGGTGGCGCGCTGCCGGCGGGCGGCGAAGCGGGGAAGGAGGACGAGGGCGTCGCCTCGACCGGCTCCCGCACTCCGCTGGCCCCTGGCTCCTCCTCGGGAGAAGGCGCGCTCGGGGAATGCGGCGAGGCGAGGAACGACGACGAAGCGCCAGCGCCAGCGCCACGGCTCATCGCCTCGCCCACCGCCGCCGCCGCCGCCGCCGCCACCACTGACTACCCACATGAAGGCGGCGAGGCGGAGCAGGAGGGCGGCAACGCGTCATCACCATGTGAAGAGCAGGAAGAGGATGACGACGACGACGAGGAGGAGGAGGCCCCGACGCATCTCCCCTTCGCACCCTCGTCGGAATCGGAGTTACCTGATGATAAGTCAACAGTTGATCCCAGCTTCACCATCTCTCTCATAAGGAAGCTGGTACCTCAGGGACCAGATGTGGATAAAGAGTTAAGTGTGAAGCAGGGACGAACAGAAGAAAAGGATGCTAGTTCTGATGTTGGGGAACCAAAACAGCCTCATGACAAAGATCTGTGGGACAATGAAGGTTGCAAACTGTGGGACCTTTCAGTTATTGAACCTCAGGCAGAACTTATGGTTAACAACCTTGTACTTGAAGTACTTTTGGCAAACCTTCATGTGAGACAATTTCTTCGAGCAAAGGAAATCTGTATTGGGATCATAGGAAACTTAGCTTGTCATAAATCTCTGGCCAATGCAATCACTTCTCATAATGGATTAATTGCTACTGTCGTGGATCAGTTATTTCTTGATGACCCTGGTTGCCTTACTGAAACATTCAGGTTATTGAGCACCATTTTTCAGAGCAACGCATCTATGTCATGGGCTGAAGCTCTCTTACCTGATGAGATTCTTTCACGTATTATGTGGATAATTGGAAACACAGTGCATGCTACCTTACTTCAGAAGATACTGGAGTTTCTATCAGCTCTTGTTGATGATCAAGATGTCATTACCATTCTTATCGAGCCCTTGATAAAAGTGGGTTTAGTTGACTGTGCTATTGGTTTGCTATTAAATGAGCTTGAAAAATCAATGGATGGGAACAATCTAGACAGGTCAGATTCTCTTGATTCAATCCTTCGACTTATTGAAGAACTGTCCGCCATAGACAACTGTTCAAAAGTAATGTCATCAAATGACCAATTGATTAAAGCACTAAGTAATATAGTCAAGTTACCAGATAAATTTGAGGTTGAGGGCTATTGTGCTTCTGTGGTAATCATAATAGCAAATGTTTTGTCTGATGGAGAACATCTCACACCTATTCTGTCCCATGATTTACCCTTACTGGAGGGCCTATTTGACATTCTTCCATTGATCTCTGATGATAATGAAGCTCGAAATGCATTTTGGTGTATCTTGACACGTTTACTGCAACAAGTAGAAGAAGGAGAAACCATCACGAACTCTTCAAAACTCGAGCAGTTTGTGTCTATCTTCTTGGCTAAGTTCACCCTCATGAAAGATGACATTGAAAGACATGGGATTCAAACAGAAGCTGATTCCTCAGTTGAGGGTGTTTCTTTGAAGAATGGGCTACGCACATCTCTCAAGGCGATCTGCAGTATCACGGAGAGATGGATTGCGGACAAGTCCTCCTTGGGCAAAGAAGATGCTTCACTGACCGAAAACACCATTGAAAATGCTAAAGAGCTGCTGACTTTCTGCCGGCGTGCAATGGGTATTGCTGACCTGTGAGTTTGGAATACGGAGGTTTTGACGTAGAGGGCAACCACGTACGTGAAAAATTACTAGGAGTTTTGCTGTATAGCACGAGATCATCCGGAAGTCTGTTAAAACCAACTAGGAGTTTTGCTGTAGAGGATCACAGTGATGCATAGATCATCAGTTGCTAAAGTAGATCACTACTCACATAGCTCTGCCAATTTACATTGATGTGGTTACATTATTGGTGCTAGCGATGTAATGAACGCGCATAAAAATGATACGGTGCTAGAG]
consensusID : consensus_1837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence
[GCNTCGCCGACGNCGGTCGCCGGCACACTCGCCTTCGCCTCGCCCACCACCAAACCACCTCCNATGGCGCCCGGTTCCTCCTCCACCTCCTCCCCGGGAGGAAAANCCGCCGCGGTGGGCGGGAGGCGGGGAAGNAGGGCGGAGCGTNGCCCTNGACCGNGGCAGCTGCNTCCAACCACGCTCCGGTGGNGCCCGACGGCTCGCCGGGAGGTGGCGCGCTGCCGGCGGGCGGCGAAGGGGNGAAGNAGGACGAGGGCTTCGCCTCGA]
[+] EMBL C28208 [GCNTCGCCGACGNCGGTCGCCGGCACACTCGCCTTCGCCTCGCCCACCACCAAACCACCTCCNATGGCGCCCGGTTCCTCCTCCACCTCCTCCCCGGGAGGAAAANCCGCCGCGGTGGGCGGGAGGCGGGGAAGNAGGGCGGAGCGTNGCCCTNGACCGNGGCAGCTGCNTCCAACCACGCTCCGGTGGNGCCCGACGGCTCGCCGGGAGGTGGCGCGCTGCCGGCGGGCGGCGAAGGGGNGAAGNAGGACGAGGGCTTCGCCTCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1837#0 ACGAGGCAGGAAAGAAACCCCAAACCCGCGTCGCCGACGCCG-TCGCCGGCACACTCGCC 59
consensus_1837#1 ---------------------------GCNTCGCCGACGNCGGTCGCCGGCACACTCGCC 33
** ********* ** *****************
consensus_1837#0 TTCGCCTCGCCCACCACCAAACCACCTCCGATGGCGCCCGGCTCCTCCTCCACCTCCTCC 119
consensus_1837#1 TTCGCCTCGCCCACCACCAAACCACCTCCNATGGCGCCCGGTTCCTCCTCCACCTCCTCC 93
***************************** *********** ******************
consensus_1837#0 CCGGGAGGAAAAGCCGCCGCGGTGGGCGGCGAGGCGGGGAAGGAGGGCGGAGCCGTGCCC 179
consensus_1837#1 CCGGGAGGAAAANCCGCCGCGGTGGGCGG-GAGGCGGGGAAGNAGGGCGGAGCGTNGCCC 152
************ **************** ************ ********** ****
consensus_1837#0 TCGCCCGCGGCAGCTGCCTCCGACCACGCTCCGGTGGCGCCCGACGGCTCGCCGGGAGGT 239
consensus_1837#1 TNGACCGNGGCAGCTGCNTCCAACCACGCTCCGGTGGNGCCCGACGGCTCGCCGGGAGGT 212
* * *** ********* *** *************** **********************
consensus_1837#0 GGCGCGCTGCCGGCGGGCGGCGAAGCGGGGAAGGAGGACGAGGGCGTCGCCTCGACCGGC 299
consensus_1837#1 GGCGCGCTGCCGGCGGGCGGCGAAGGGGNGAAGNAGGACGAGGGCTTCGCCTCGA----- 267
************************* ** **** *********** *********
consensus_1837#0 TCCCGCACTCCGCTGGCCCCTGGCTCCTCCTCGGGAGAAGGCGCGCTCGGGGAATGCGGC 359
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 GAGGCGAGGAACGACGACGAAGCGCCAGCGCCAGCGCCACGGCTCATCGCCTCGCCCACC 419
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 GCCGCCGCCGCCGCCGCCGCCACCACTGACTACCCACATGAAGGCGGCGAGGCGGAGCAG 479
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 GAGGGCGGCAACGCGTCATCACCATGTGAAGAGCAGGAAGAGGATGACGACGACGACGAG 539
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 GAGGAGGAGGCCCCGACGCATCTCCCCTTCGCACCCTCGTCGGAATCGGAGTTACCTGAT 599
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 GATAAGTCAACAGTTGATCCCAGCTTCACCATCTCTCTCATAAGGAAGCTGGTACCTCAG 659
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 GGACCAGATGTGGATAAAGAGTTAAGTGTGAAGCAGGGACGAACAGAAGAAAAGGATGCT 719
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 AGTTCTGATGTTGGGGAACCAAAACAGCCTCATGACAAAGATCTGTGGGACAATGAAGGT 779
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 TGCAAACTGTGGGACCTTTCAGTTATTGAACCTCAGGCAGAACTTATGGTTAACAACCTT 839
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 GTACTTGAAGTACTTTTGGCAAACCTTCATGTGAGACAATTTCTTCGAGCAAAGGAAATC 899
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 TGTATTGGGATCATAGGAAACTTAGCTTGTCATAAATCTCTGGCCAATGCAATCACTTCT 959
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 CATAATGGATTAATTGCTACTGTCGTGGATCAGTTATTTCTTGATGACCCTGGTTGCCTT 1019
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 ACTGAAACATTCAGGTTATTGAGCACCATTTTTCAGAGCAACGCATCTATGTCATGGGCT 1079
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 GAAGCTCTCTTACCTGATGAGATTCTTTCACGTATTATGTGGATAATTGGAAACACAGTG 1139
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 CATGCTACCTTACTTCAGAAGATACTGGAGTTTCTATCAGCTCTTGTTGATGATCAAGAT 1199
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 GTCATTACCATTCTTATCGAGCCCTTGATAAAAGTGGGTTTAGTTGACTGTGCTATTGGT 1259
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 TTGCTATTAAATGAGCTTGAAAAATCAATGGATGGGAACAATCTAGACAGGTCAGATTCT 1319
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 CTTGATTCAATCCTTCGACTTATTGAAGAACTGTCCGCCATAGACAACTGTTCAAAAGTA 1379
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 ATGTCATCAAATGACCAATTGATTAAAGCACTAAGTAATATAGTCAAGTTACCAGATAAA 1439
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 TTTGAGGTTGAGGGCTATTGTGCTTCTGTGGTAATCATAATAGCAAATGTTTTGTCTGAT 1499
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 GGAGAACATCTCACACCTATTCTGTCCCATGATTTACCCTTACTGGAGGGCCTATTTGAC 1559
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 ATTCTTCCATTGATCTCTGATGATAATGAAGCTCGAAATGCATTTTGGTGTATCTTGACA 1619
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 CGTTTACTGCAACAAGTAGAAGAAGGAGAAACCATCACGAACTCTTCAAAACTCGAGCAG 1679
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 TTTGTGTCTATCTTCTTGGCTAAGTTCACCCTCATGAAAGATGACATTGAAAGACATGGG 1739
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 ATTCAAACAGAAGCTGATTCCTCAGTTGAGGGTGTTTCTTTGAAGAATGGGCTACGCACA 1799
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 TCTCTCAAGGCGATCTGCAGTATCACGGAGAGATGGATTGCGGACAAGTCCTCCTTGGGC 1859
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 AAAGAAGATGCTTCACTGACCGAAAACACCATTGAAAATGCTAAAGAGCTGCTGACTTTC 1919
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 TGCCGGCGTGCAATGGGTATTGCTGACCTGTGAGTTTGGAATACGGAGGTTTTGACGTAG 1979
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 AGGGCAACCACGTACGTGAAAAATTACTAGGAGTTTTGCTGTATAGCACGAGATCATCCG 2039
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 GAAGTCTGTTAAAACCAACTAGGAGTTTTGCTGTAGAGGATCACAGTGATGCATAGATCA 2099
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 TCAGTTGCTAAAGTAGATCACTACTCACATAGCTCTGCCAATTTACATTGATGTGGTTAC 2159
consensus_1837#1 ------------------------------------------------------------
consensus_1837#0 ATTATTGGTGCTAGCGATGTAATGAACGCGCATAAAAATGATACGGTGCTAGAG 2213
consensus_1837#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||