These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1837#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2213 fasta sequence [ACGAGGCAGGAAAGAAACCCCAAACCCGCGTCGCCGACGCCGTCGCCGGCACACTCGCCTTCGCCTCGCCCACCACCAAACCACCTCCGATGGCGCCCGGCTCCTCCTCCACCTCCTCCCCGGGAGGAAAAGCCGCCGCGGTGGGCGGCGAGGCGGGGAAGGAGGGCGGAGCCGTGCCCTCGCCCGCGGCAGCTGCCTCCGACCACGCTCCGGTGGCGCCCGACGGCTCGCCGGGAGGTGGCGCGCTGCCGGCGGGCGGCGAAGCGGGGAAGGAGGACGAGGGCGTCGCCTCGACCGGCTCCCGCACTCCGCTGGCCCCTGGCTCCTCCTCGGGAGAAGGCGCGCTCGGGGAATGCGGCGAGGCGAGGAACGACGACGAAGCGCCAGCGCCAGCGCCACGGCTCATCGCCTCGCCCACCGCCGCCGCCGCCGCCGCCGCCACCACTGACTACCCACATGAAGGCGGCGAGGCGGAGCAGGAGGGCGGCAACGCGTCATCACCATGTGAAGAGCAGGAAGAGGATGACGACGACGACGAGGAGGAGGAGGCCCCGACGCATCTCCCCTTCGCACCCTCGTCGGAATCGGAGTTACCTGATGATAAGTCAACAGTTGATCCCAGCTTCACCATCTCTCTCATAAGGAAGCTGGTACCTCAGGGACCAGATGTGGATAAAGAGTTAAGTGTGAAGCAGGGACGAACAGAAGAAAAGGATGCTAGTTCTGATGTTGGGGAACCAAAACAGCCTCATGACAAAGATCTGTGGGACAATGAAGGTTGCAAACTGTGGGACCTTTCAGTTATTGAACCTCAGGCAGAACTTATGGTTAACAACCTTGTACTTGAAGTACTTTTGGCAAACCTTCATGTGAGACAATTTCTTCGAGCAAAGGAAATCTGTATTGGGATCATAGGAAACTTAGCTTGTCATAAATCTCTGGCCAATGCAATCACTTCTCATAATGGATTAATTGCTACTGTCGTGGATCAGTTATTTCTTGATGACCCTGGTTGCCTTACTGAAACATTCAGGTTATTGAGCACCATTTTTCAGAGCAACGCATCTATGTCATGGGCTGAAGCTCTCTTACCTGATGAGATTCTTTCACGTATTATGTGGATAATTGGAAACACAGTGCATGCTACCTTACTTCAGAAGATACTGGAGTTTCTATCAGCTCTTGTTGATGATCAAGATGTCATTACCATTCTTATCGAGCCCTTGATAAAAGTGGGTTTAGTTGACTGTGCTATTGGTTTGCTATTAAATGAGCTTGAAAAATCAATGGATGGGAACAATCTAGACAGGTCAGATTCTCTTGATTCAATCCTTCGACTTATTGAAGAACTGTCCGCCATAGACAACTGTTCAAAAGTAATGTCATCAAATGACCAATTGATTAAAGCACTAAGTAATATAGTCAAGTTACCAGATAAATTTGAGGTTGAGGGCTATTGTGCTTCTGTGGTAATCATAATAGCAAATGTTTTGTCTGATGGAGAACATCTCACACCTATTCTGTCCCATGATTTACCCTTACTGGAGGGCCTATTTGACATTCTTCCATTGATCTCTGATGATAATGAAGCTCGAAATGCATTTTGGTGTATCTTGACACGTTTACTGCAACAAGTAGAAGAAGGAGAAACCATCACGAACTCTTCAAAACTCGAGCAGTTTGTGTCTATCTTCTTGGCTAAGTTCACCCTCATGAAAGATGACATTGAAAGACATGGGATTCAAACAGAAGCTGATTCCTCAGTTGAGGGTGTTTCTTTGAAGAATGGGCTACGCACATCTCTCAAGGCGATCTGCAGTATCACGGAGAGATGGATTGCGGACAAGTCCTCCTTGGGCAAAGAAGATGCTTCACTGACCGAAAACACCATTGAAAATGCTAAAGAGCTGCTGACTTTCTGCCGGCGTGCAATGGGTATTGCTGACCTGTGAGTTTGGAATACGGAGGTTTTGACGTAGAGGGCAACCACGTACGTGAAAAATTACTAGGAGTTTTGCTGTATAGCACGAGATCATCCGGAAGTCTGTTAAAACCAACTAGGAGTTTTGCTGTAGAGGATCACAGTGATGCATAGATCATCAGTTGCTAAAGTAGATCACTACTCACATAGCTCTGCCAATTTACATTGATGTGGTTACATTATTGGTGCTAGCGATGTAATGAACGCGCATAAAAATGATACGGTGCTAGAG] [+] EMBL AK120860 [ACGAGGCAGGAAAGAAACCCCAAACCCGCGTCGCCGACGCCGTCGCCGGCACACTCGCCTTCGCCTCGCCCACCACCAAACCACCTCCGATGGCGCCCGGCTCCTCCTCCACCTCCTCCCCGGGAGGAAAAGCCGCCGCGGTGGGCGGCGAGGCGGGGAAGGAGGGCGGAGCCGTGCCCTCGCCCGCGGCAGCTGCCTCCGACCACGCTCCGGTGGCGCCCGACGGCTCGCCGGGAGGTGGCGCGCTGCCGGCGGGCGGCGAAGCGGGGAAGGAGGACGAGGGCGTCGCCTCGACCGGCTCCCGCACTCCGCTGGCCCCTGGCTCCTCCTCGGGAGAAGGCGCGCTCGGGGAATGCGGCGAGGCGAGGAACGACGACGAAGCGCCAGCGCCAGCGCCACGGCTCATCGCCTCGCCCACCGCCGCCGCCGCCGCCGCCGCCACCACTGACTACCCACATGAAGGCGGCGAGGCGGAGCAGGAGGGCGGCAACGCGTCATCACCATGTGAAGAGCAGGAAGAGGATGACGACGACGACGAGGAGGAGGAGGCCCCGACGCATCTCCCCTTCGCACCCTCGTCGGAATCGGAGTTACCTGATGATAAGTCAACAGTTGATCCCAGCTTCACCATCTCTCTCATAAGGAAGCTGGTACCTCAGGGACCAGATGTGGATAAAGAGTTAAGTGTGAAGCAGGGACGAACAGAAGAAAAGGATGCTAGTTCTGATGTTGGGGAACCAAAACAGCCTCATGACAAAGATCTGTGGGACAATGAAGGTTGCAAACTGTGGGACCTTTCAGTTATTGAACCTCAGGCAGAACTTATGGTTAACAACCTTGTACTTGAAGTACTTTTGGCAAACCTTCATGTGAGACAATTTCTTCGAGCAAAGGAAATCTGTATTGGGATCATAGGAAACTTAGCTTGTCATAAATCTCTGGCCAATGCAATCACTTCTCATAATGGATTAATTGCTACTGTCGTGGATCAGTTATTTCTTGATGACCCTGGTTGCCTTACTGAAACATTCAGGTTATTGAGCACCATTTTTCAGAGCAACGCATCTATGTCATGGGCTGAAGCTCTCTTACCTGATGAGATTCTTTCACGTATTATGTGGATAATTGGAAACACAGTGCATGCTACCTTACTTCAGAAGATACTGGAGTTTCTATCAGCTCTTGTTGATGATCAAGATGTCATTACCATTCTTATCGAGCCCTTGATAAAAGTGGGTTTAGTTGACTGTGCTATTGGTTTGCTATTAAATGAGCTTGAAAAATCAATGGATGGGAACAATCTAGACAGGTCAGATTCTCTTGATTCAATCCTTCGACTTATTGAAGAACTGTCCGCCATAGACAACTGTTCAAAAGTAATGTCATCAAATGACCAATTGATTAAAGCACTAAGTAATATAGTCAAGTTACCAGATAAATTTGAGGTTGAGGGCTATTGTGCTTCTGTGGTAATCATAATAGCAAATGTTTTGTCTGATGGAGAACATCTCACACCTATTCTGTCCCATGATTTACCCTTACTGGAGGGCCTATTTGACATTCTTCCATTGATCTCTGATGATAATGAAGCTCGAAATGCATTTTGGTGTATCTTGACACGTTTACTGCAACAAGTAGAAGAAGGAGAAACCATCACGAACTCTTCAAAACTCGAGCAGTTTGTGTCTATCTTCTTGGCTAAGTTCACCCTCATGAAAGATGACATTGAAAGACATGGGATTCAAACAGAAGCTGATTCCTCAGTTGAGGGTGTTTCTTTGAAGAATGGGCTACGCACATCTCTCAAGGCGATCTGCAGTATCACGGAGAGATGGATTGCGGACAAGTCCTCCTTGGGCAAAGAAGATGCTTCACTGACCGAAAACACCATTGAAAATGCTAAAGAGCTGCTGACTTTCTGCCGGCGTGCAATGGGTATTGCTGACCTGTGAGTTTGGAATACGGAGGTTTTGACGTAGAGGGCAACCACGTACGTGAAAAATTACTAGGAGTTTTGCTGTATAGCACGAGATCATCCGGAAGTCTGTTAAAACCAACTAGGAGTTTTGCTGTAGAGGATCACAGTGATGCATAGATCATCAGTTGCTAAAGTAGATCACTACTCACATAGCTCTGCCAATTTACATTGATGTGGTTACATTATTGGTGCTAGCGATGTAATGAACGCGCATAAAAATGATACGGTGCTAGAG] consensusID : consensus_1837#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 267 fasta sequence [GCNTCGCCGACGNCGGTCGCCGGCACACTCGCCTTCGCCTCGCCCACCACCAAACCACCTCCNATGGCGCCCGGTTCCTCCTCCACCTCCTCCCCGGGAGGAAAANCCGCCGCGGTGGGCGGGAGGCGGGGAAGNAGGGCGGAGCGTNGCCCTNGACCGNGGCAGCTGCNTCCAACCACGCTCCGGTGGNGCCCGACGGCTCGCCGGGAGGTGGCGCGCTGCCGGCGGGCGGCGAAGGGGNGAAGNAGGACGAGGGCTTCGCCTCGA] [+] EMBL C28208 [GCNTCGCCGACGNCGGTCGCCGGCACACTCGCCTTCGCCTCGCCCACCACCAAACCACCTCCNATGGCGCCCGGTTCCTCCTCCACCTCCTCCCCGGGAGGAAAANCCGCCGCGGTGGGCGGGAGGCGGGGAAGNAGGGCGGAGCGTNGCCCTNGACCGNGGCAGCTGCNTCCAACCACGCTCCGGTGGNGCCCGACGGCTCGCCGGGAGGTGGCGCGCTGCCGGCGGGCGGCGAAGGGGNGAAGNAGGACGAGGGCTTCGCCTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1837#0 ACGAGGCAGGAAAGAAACCCCAAACCCGCGTCGCCGACGCCG-TCGCCGGCACACTCGCC 59 consensus_1837#1 ---------------------------GCNTCGCCGACGNCGGTCGCCGGCACACTCGCC 33 ** ********* ** ***************** consensus_1837#0 TTCGCCTCGCCCACCACCAAACCACCTCCGATGGCGCCCGGCTCCTCCTCCACCTCCTCC 119 consensus_1837#1 TTCGCCTCGCCCACCACCAAACCACCTCCNATGGCGCCCGGTTCCTCCTCCACCTCCTCC 93 ***************************** *********** ****************** consensus_1837#0 CCGGGAGGAAAAGCCGCCGCGGTGGGCGGCGAGGCGGGGAAGGAGGGCGGAGCCGTGCCC 179 consensus_1837#1 CCGGGAGGAAAANCCGCCGCGGTGGGCGG-GAGGCGGGGAAGNAGGGCGGAGCGTNGCCC 152 ************ **************** ************ ********** **** consensus_1837#0 TCGCCCGCGGCAGCTGCCTCCGACCACGCTCCGGTGGCGCCCGACGGCTCGCCGGGAGGT 239 consensus_1837#1 TNGACCGNGGCAGCTGCNTCCAACCACGCTCCGGTGGNGCCCGACGGCTCGCCGGGAGGT 212 * * *** ********* *** *************** ********************** consensus_1837#0 GGCGCGCTGCCGGCGGGCGGCGAAGCGGGGAAGGAGGACGAGGGCGTCGCCTCGACCGGC 299 consensus_1837#1 GGCGCGCTGCCGGCGGGCGGCGAAGGGGNGAAGNAGGACGAGGGCTTCGCCTCGA----- 267 ************************* ** **** *********** ********* consensus_1837#0 TCCCGCACTCCGCTGGCCCCTGGCTCCTCCTCGGGAGAAGGCGCGCTCGGGGAATGCGGC 359 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 GAGGCGAGGAACGACGACGAAGCGCCAGCGCCAGCGCCACGGCTCATCGCCTCGCCCACC 419 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 GCCGCCGCCGCCGCCGCCGCCACCACTGACTACCCACATGAAGGCGGCGAGGCGGAGCAG 479 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 GAGGGCGGCAACGCGTCATCACCATGTGAAGAGCAGGAAGAGGATGACGACGACGACGAG 539 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 GAGGAGGAGGCCCCGACGCATCTCCCCTTCGCACCCTCGTCGGAATCGGAGTTACCTGAT 599 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 GATAAGTCAACAGTTGATCCCAGCTTCACCATCTCTCTCATAAGGAAGCTGGTACCTCAG 659 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 GGACCAGATGTGGATAAAGAGTTAAGTGTGAAGCAGGGACGAACAGAAGAAAAGGATGCT 719 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 AGTTCTGATGTTGGGGAACCAAAACAGCCTCATGACAAAGATCTGTGGGACAATGAAGGT 779 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 TGCAAACTGTGGGACCTTTCAGTTATTGAACCTCAGGCAGAACTTATGGTTAACAACCTT 839 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 GTACTTGAAGTACTTTTGGCAAACCTTCATGTGAGACAATTTCTTCGAGCAAAGGAAATC 899 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 TGTATTGGGATCATAGGAAACTTAGCTTGTCATAAATCTCTGGCCAATGCAATCACTTCT 959 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 CATAATGGATTAATTGCTACTGTCGTGGATCAGTTATTTCTTGATGACCCTGGTTGCCTT 1019 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 ACTGAAACATTCAGGTTATTGAGCACCATTTTTCAGAGCAACGCATCTATGTCATGGGCT 1079 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 GAAGCTCTCTTACCTGATGAGATTCTTTCACGTATTATGTGGATAATTGGAAACACAGTG 1139 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 CATGCTACCTTACTTCAGAAGATACTGGAGTTTCTATCAGCTCTTGTTGATGATCAAGAT 1199 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 GTCATTACCATTCTTATCGAGCCCTTGATAAAAGTGGGTTTAGTTGACTGTGCTATTGGT 1259 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 TTGCTATTAAATGAGCTTGAAAAATCAATGGATGGGAACAATCTAGACAGGTCAGATTCT 1319 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 CTTGATTCAATCCTTCGACTTATTGAAGAACTGTCCGCCATAGACAACTGTTCAAAAGTA 1379 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 ATGTCATCAAATGACCAATTGATTAAAGCACTAAGTAATATAGTCAAGTTACCAGATAAA 1439 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 TTTGAGGTTGAGGGCTATTGTGCTTCTGTGGTAATCATAATAGCAAATGTTTTGTCTGAT 1499 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 GGAGAACATCTCACACCTATTCTGTCCCATGATTTACCCTTACTGGAGGGCCTATTTGAC 1559 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 ATTCTTCCATTGATCTCTGATGATAATGAAGCTCGAAATGCATTTTGGTGTATCTTGACA 1619 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 CGTTTACTGCAACAAGTAGAAGAAGGAGAAACCATCACGAACTCTTCAAAACTCGAGCAG 1679 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 TTTGTGTCTATCTTCTTGGCTAAGTTCACCCTCATGAAAGATGACATTGAAAGACATGGG 1739 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 ATTCAAACAGAAGCTGATTCCTCAGTTGAGGGTGTTTCTTTGAAGAATGGGCTACGCACA 1799 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 TCTCTCAAGGCGATCTGCAGTATCACGGAGAGATGGATTGCGGACAAGTCCTCCTTGGGC 1859 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 AAAGAAGATGCTTCACTGACCGAAAACACCATTGAAAATGCTAAAGAGCTGCTGACTTTC 1919 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 TGCCGGCGTGCAATGGGTATTGCTGACCTGTGAGTTTGGAATACGGAGGTTTTGACGTAG 1979 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 AGGGCAACCACGTACGTGAAAAATTACTAGGAGTTTTGCTGTATAGCACGAGATCATCCG 2039 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 GAAGTCTGTTAAAACCAACTAGGAGTTTTGCTGTAGAGGATCACAGTGATGCATAGATCA 2099 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 TCAGTTGCTAAAGTAGATCACTACTCACATAGCTCTGCCAATTTACATTGATGTGGTTAC 2159 consensus_1837#1 ------------------------------------------------------------ consensus_1837#0 ATTATTGGTGCTAGCGATGTAATGAACGCGCATAAAAATGATACGGTGCTAGAG 2213 consensus_1837#1 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||