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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2146 fasta sequence
[CCATCTGTAAACTCACTCGTTCGTCGGAGGCGACGGCCATGGCTTCGCCGGAGCTCGCCGCCGGCGATGGCAGCTACAACTTCCACCTCCGCTCCCTCTCCGCCGCATCCAGGGACTCCGCCGCGGCCGCCGACCCCGCCTCCGACCCCAACCTCCTCGAATCCGTGAGGAGGGTGTGCGAGATGTGCAAGGAGGCCAAGGGGGCCAGCGACGAGATGGTGGCCCGGGCGTTCCCTGTGATGAGCAAGCTGTTCCAGCGCTGCGCCGCCGCGCCGACCCAATCCGTGGCCTCCAGCGGCGTGCTGCTACTCACCATTCTGCAGTTCTTCCTGGACTTTGGGGAGGCAGTCCTGCATGATGCTGATGGTAGCTTGAGGACCTTCTTCCGCTCTTGCCTAAGTAGGGAGTTCGCTGATCCTATTGTCGCAGAACGTACACTTGAATTCCTGATAGCGAATAAGACAAAGATCCTGAGCTCTTTTCCCACATTAATTCCACAGTTTTTTCCATTGTTGCTGAAGCTAATTGCATCAAATGGTGAGAGATTGGAGAGGAAGTTCTCAGAAGTGCTTCCGTTAATGATGTCAGCAGGATCTTTTCTTCCTCTCTTCCTGTCCCTTATGGATCTTCCAATGTTAGTGGTAGCATTGGAAAAGGTGGAAAGAAGTTCTGGAACTCTCATCGGTAGTAGTATAGCTACTATACAGAAGAGTGCTGCTCCTGAGATGCTACTTGCACTAATGGATGAAGCATACACTGGTTCTGCTATAGAAGATGCCATTGGCAATGCAGGTTCGGATGATAGTGGTCCTCTAGACCTTGCTGACCCGATGTTCCTTGATCTTCTAAAAGATGAGAATGATGGTATTGCTGCAAAACATTGGACATCTCCTACGATATCTTCAACCTTACAGGCAGCAGTTAATAGCCCACAATCGGACAGATTGAAACAGTCACTGAAAATGGCACCTCGTTTTCTTACATTATATTTTGCTACAGCATTGCGGGACGTTAACGACTCACTCCTATGCGCTCTGATTCCTGTAGTTATGTCAAGATATGCAGCAATGTTCCCTGACAAAGTATACTCCTTCGAGGTGAGGAAAAGACTTTCAGATTTCATATTGGCTGCATTCCAGCGCTCCCCTGACATCATTGCACTGCTAAAGAAGCCCATTACAGACAGACTTGGGGAGGCTCATGATAATCCTGCAAAGACTGAATTAGCATTGCATTTGTGTTGGGCCATTGGTGAGCATGGAGCTGGAGGAAAAAATCGCAAAGATGTAGCTCGTGAACTGTTTGAAAATTTGGAGTTGCTGTTATATGAAAATCTGGCTACCAGTCGTTTGGGATTAAGTCAGGACACAGGATTTGATCCTATGGGTGCATCTTCTAGAAAATCATCTCAAGCTAGGCTCCTCTGCTTTGTGGTGACTGCCATAGCAAAGCTAGCAACGTTCCATAATGAGTTGCTTCCAAGAGCACGTGTATCATTGGCCAAGGTCGCTCGTTCCCGAACCTCGGACAGGAGAGTGTGGCAACGTGCTTGTGACTATTTAGGTCTATTGAATGAACCGGCCATTTGTTTATCTGTACTAGGACCATCCACCGCACAAGGAAATGGTCCTGGTATTGTCAACTGGAGTGAAGGAGGAACAAAGATGGTAGCTCACATTCCGTTCTACCTGTTAGCTGAACAAAAAGGTGCACCGATCCATGATTTTTCGTTTGACGATCTCGTCCCCACGGAATGATGTACTTTCATGAGTGCAATGGATTCATACAATGATTCCCTCGCGGACATCATCTGTGCTGACTGCCGAGGCTTTTGGTGGTAATGTCATGAATCATGAAGATCCAAGTGGCGTCTCTTATGAGTTTATCCAGTTCATTATTCAGTCTAAAGGCGAGCTAAGTTGCTTTGGATGAGACCGTATAGTTTCTGGGAACTGAAATGTTTGTTCATGGGGTGAAGGTTATGGCAGAAGCACTCGAGTATTTCCATGTAGGGATTGTCGTATATATGTAATCTTTTGAAGGGTAATCAGTGATGTAAATAATAAGAGTGGCATAAATTTTATCAAGGAGTATTAAATTGATTGTGCTGTTTTTTGGGGGATATGCGACAGTTCTGATAGAATAC]
[+] EMBL AK070625 [CCATCTGTAAACTCACTCGTTCGTCGGAGGCGACGGCCATGGCTTCGCCGGAGCTCGCCGCCGGCGATGGCAGCTACAACTTCCACCTCCGCTCCCTCTCCGCCGCATCCAGGGACTCCGCCGCGGCCGCCGACCCCGCCTCCGACCCCAACCTCCTCGAATCCGTGAGGAGGGTGTGCGAGATGTGCAAGGAGGCCAAGGGGGCCAGCGACGAGATGGTGGCCCGGGCGTTCCCTGTGATGAGCAAGCTGTTCCAGCGCTGCGCCGCCGCGCCGACCCAATCCGTGGCCTCCAGCGGCGTGCTGCTACTCACCATTCTGCAGTTCTTCCTGGACTTTGGGGAGGCAGTCCTGCATGATGCTGATGGTAGCTTGAGGACCTTCTTCCGCTCTTGCCTAAGTAGGGAGTTCGCTGATCCTATTGTCGCAGAACGTACACTTGAATTCCTGATAGCGAATAAGACAAAGATCCTGAGCTCTTTTCCCACATTAATTCCACAGTTTTTTCCATTGTTGCTGAAGCTAATTGCATCAAATGGTGAGAGATTGGAGAGGAAGTTCTCAGAAGTGCTTCCGTTAATGATGTCAGCAGGATCTTTTCTTCCTCTCTTCCTGTCCCTTATGGATCTTCCAATGTTAGTGGTAGCATTGGAAAAGGTGGAAAGAAGTTCTGGAACTCTCATCGGTAGTAGTATAGCTACTATACAGAAGAGTGCTGCTCCTGAGATGCTACTTGCACTAATGGATGAAGCATACACTGGTTCTGCTATAGAAGATGCCATTGGCAATGCAGGTTCGGATGATAGTGGTCCTCTAGACCTTGCTGACCCGATGTTCCTTGATCTTCTAAAAGATGAGAATGATGGTATTGCTGCAAAACATTGGACATCTCCTACGATATCTTCAACCTTACAGGCAGCAGTTAATAGCCCACAATCGGACAGATTGAAACAGTCACTGAAAATGGCACCTCGTTTTCTTACATTATATTTTGCTACAGCATTGCGGGACGTTAACGACTCACTCCTATGCGCTCTGATTCCTGTAGTTATGTCAAGATATGCAGCAATGTTCCCTGACAAAGTATACTCCTTCGAGGTGAGGAAAAGACTTTCAGATTTCATATTGGCTGCATTCCAGCGCTCCCCTGACATCATTGCACTGCTAAAGAAGCCCATTACAGACAGACTTGGGGAGGCTCATGATAATCCTGCAAAGACTGAATTAGCATTGCATTTGTGTTGGGCCATTGGTGAGCATGGAGCTGGAGGAAAAAATCGCAAAGATGTAGCTCGTGAACTGTTTGAAAATTTGGAGTTGCTGTTATATGAAAATCTGGCTACCAGTCGTTTGGGATTAAGTCAGGACACAGGATTTGATCCTATGGGTGCATCTTCTAGAAAATCATCTCAAGCTAGGCTCCTCTGCTTTGTGGTGACTGCCATAGCAAAGCTAGCAACGTTCCATAATGAGTTGCTTCCAAGAGCACGTGTATCATTGGCCAAGGTCGCTCGTTCCCGAACCTCGGACAGGAGAGTGTGGCAACGTGCTTGTGACTATTTAGGTCTATTGAATGAACCGGCCATTTGTTTATCTGTACTAGGACCATCCACCGCACAAGGAAATGGTCCTGGTATTGTCAACTGGAGTGAAGGAGGAACAAAGATGGTAGCTCACATTCCGTTCTACCTGTTAGCTGAACAAAAAGGTGCACCGATCCATGATTTTTCGTTTGACGATCTCGTCCCCACGGAATGATGTACTTTCATGAGTGCAATGGATTCATACAATGATTCCCTCGCGGACATCATCTGTGCTGACTGCCGAGGCTTTTGGTGGTAATGTCATGAATCATGAAGATCCAAGTGGCGTCTCTTATGAGTTTATCCAGTTCATTATTCAGTCTAAAGGCGAGCTAAGTTGCTTTGGATGAGACCGTATAGTTTCTGGGAACTGAAATGTTTGTTCATGGGGTGAAGGTTATGGCAGAAGCACTCGAGTATTTCCATGTAGGGATTGTCGTATATATGTAATCTTTTGAAGGGTAATCAGTGATGTAAATAATAAGAGTGGCATAAATTTTATCAAGGAGTATTAAATTGATTGTGCTGTTTTTTGGGGGATATGCGACAGTTCTGATAGAATAC]
consensusID : consensus_184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 325 fasta sequence
[AGAGGACGAGACAAGGGGCTGTGCTGCCCGCCGAGGCTTTTGGTGGTAATGTCATGAATCATGAAGATCCAAGTGGGGTCTTTTATGAGTTTATCCAGTTCATTATTCAGTCTAAAGGCGAGCTAAGTTGCTTTGGATGAGACCGTATAGTTTTTGGGAACTGAAATGTTTGTTCATGGGGTGAAGGTTATGGCAAAAGCCCTCGAGTATTTCCATGTAGGGATTGTGGTATATATGTAATCTTTTGAAGGGTAATCAGTGATGTAAATAATAAGAGTGGCATAAATTTTATCAAGGAGTTTTAAAAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA761569 [AGAGGACGAGACAAGGGGCTGTGCTGCCCGCCGAGGCTTTTGGTGGTAATGTCATGAATCATGAAGATCCAAGTGGGGTCTTTTATGAGTTTATCCAGTTCATTATTCAGTCTAAAGGCGAGCTAAGTTGCTTTGGATGAGACCGTATAGTTTTTGGGAACTGAAATGTTTGTTCATGGGGTGAAGGTTATGGCAAAAGCCCTCGAGTATTTCCATGTAGGGATTGTGGTATATATGTAATCTTTTGAAGGGTAATCAGTGATGTAAATAATAAGAGTGGCATAAATTTTATCAAGGAGTTTTAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_184#0 CCATCTGTAAACTCACTCGTTCGTCGGAGGCGACGGCCATGGCTTCGCCGGAGCTCGCCG 60
consensus_184#1 ------------------------------------------------------------
consensus_184#0 CCGGCGATGGCAGCTACAACTTCCACCTCCGCTCCCTCTCCGCCGCATCCAGGGACTCCG 120
consensus_184#1 ------------------------------------------------------------
consensus_184#0 CCGCGGCCGCCGACCCCGCCTCCGACCCCAACCTCCTCGAATCCGTGAGGAGGGTGTGCG 180
consensus_184#1 ------------------------------------------------------------
consensus_184#0 AGATGTGCAAGGAGGCCAAGGGGGCCAGCGACGAGATGGTGGCCCGGGCGTTCCCTGTGA 240
consensus_184#1 ------------------------------------------------------------
consensus_184#0 TGAGCAAGCTGTTCCAGCGCTGCGCCGCCGCGCCGACCCAATCCGTGGCCTCCAGCGGCG 300
consensus_184#1 ------------------------------------------------------------
consensus_184#0 TGCTGCTACTCACCATTCTGCAGTTCTTCCTGGACTTTGGGGAGGCAGTCCTGCATGATG 360
consensus_184#1 ------------------------------------------------------------
consensus_184#0 CTGATGGTAGCTTGAGGACCTTCTTCCGCTCTTGCCTAAGTAGGGAGTTCGCTGATCCTA 420
consensus_184#1 ------------------------------------------------------------
consensus_184#0 TTGTCGCAGAACGTACACTTGAATTCCTGATAGCGAATAAGACAAAGATCCTGAGCTCTT 480
consensus_184#1 ------------------------------------------------------------
consensus_184#0 TTCCCACATTAATTCCACAGTTTTTTCCATTGTTGCTGAAGCTAATTGCATCAAATGGTG 540
consensus_184#1 ------------------------------------------------------------
consensus_184#0 AGAGATTGGAGAGGAAGTTCTCAGAAGTGCTTCCGTTAATGATGTCAGCAGGATCTTTTC 600
consensus_184#1 ------------------------------------------------------------
consensus_184#0 TTCCTCTCTTCCTGTCCCTTATGGATCTTCCAATGTTAGTGGTAGCATTGGAAAAGGTGG 660
consensus_184#1 ------------------------------------------------------------
consensus_184#0 AAAGAAGTTCTGGAACTCTCATCGGTAGTAGTATAGCTACTATACAGAAGAGTGCTGCTC 720
consensus_184#1 ------------------------------------------------------------
consensus_184#0 CTGAGATGCTACTTGCACTAATGGATGAAGCATACACTGGTTCTGCTATAGAAGATGCCA 780
consensus_184#1 ------------------------------------------------------------
consensus_184#0 TTGGCAATGCAGGTTCGGATGATAGTGGTCCTCTAGACCTTGCTGACCCGATGTTCCTTG 840
consensus_184#1 ------------------------------------------------------------
consensus_184#0 ATCTTCTAAAAGATGAGAATGATGGTATTGCTGCAAAACATTGGACATCTCCTACGATAT 900
consensus_184#1 ------------------------------------------------------------
consensus_184#0 CTTCAACCTTACAGGCAGCAGTTAATAGCCCACAATCGGACAGATTGAAACAGTCACTGA 960
consensus_184#1 ------------------------------------------------------------
consensus_184#0 AAATGGCACCTCGTTTTCTTACATTATATTTTGCTACAGCATTGCGGGACGTTAACGACT 1020
consensus_184#1 ------------------------------------------------------------
consensus_184#0 CACTCCTATGCGCTCTGATTCCTGTAGTTATGTCAAGATATGCAGCAATGTTCCCTGACA 1080
consensus_184#1 ------------------------------------------------------------
consensus_184#0 AAGTATACTCCTTCGAGGTGAGGAAAAGACTTTCAGATTTCATATTGGCTGCATTCCAGC 1140
consensus_184#1 ------------------------------------------------------------
consensus_184#0 GCTCCCCTGACATCATTGCACTGCTAAAGAAGCCCATTACAGACAGACTTGGGGAGGCTC 1200
consensus_184#1 ------------------------------------------------------------
consensus_184#0 ATGATAATCCTGCAAAGACTGAATTAGCATTGCATTTGTGTTGGGCCATTGGTGAGCATG 1260
consensus_184#1 ------------------------------------------------------------
consensus_184#0 GAGCTGGAGGAAAAAATCGCAAAGATGTAGCTCGTGAACTGTTTGAAAATTTGGAGTTGC 1320
consensus_184#1 ------------------------------------------------------------
consensus_184#0 TGTTATATGAAAATCTGGCTACCAGTCGTTTGGGATTAAGTCAGGACACAGGATTTGATC 1380
consensus_184#1 ------------------------------------------------------------
consensus_184#0 CTATGGGTGCATCTTCTAGAAAATCATCTCAAGCTAGGCTCCTCTGCTTTGTGGTGACTG 1440
consensus_184#1 ------------------------------------------------------------
consensus_184#0 CCATAGCAAAGCTAGCAACGTTCCATAATGAGTTGCTTCCAAGAGCACGTGTATCATTGG 1500
consensus_184#1 ------------------------------------------------------------
consensus_184#0 CCAAGGTCGCTCGTTCCCGAACCTCGGACAGGAGAGTGTGGCAACGTGCTTGTGACTATT 1560
consensus_184#1 ------------------------------------------------------------
consensus_184#0 TAGGTCTATTGAATGAACCGGCCATTTGTTTATCTGTACTAGGACCATCCACCGCACAAG 1620
consensus_184#1 ------------------------------------------------------------
consensus_184#0 GAAATGGTCCTGGTATTGTCAACTGGAGTGAAGGAGGAACAAAGATGGTAGCTCACATTC 1680
consensus_184#1 ------------------------------------------------------------
consensus_184#0 CGTTCTACCTGTTAGCTGAACAAAAAGGTGCACCGATCCATGATTTTTCGTTTGACGATC 1740
consensus_184#1 ------------------------------------------------------------
consensus_184#0 TCGTCCCCACGGAATGATGTACTTTCATGAGTGCAATGGATTCATACAATGATTCCCTCG 1800
consensus_184#1 ----------------------------------------------------AGAGGACG 8
**
consensus_184#0 CGGACATCATCTGTGCTGACTGCCGAGGCTTTTGGTGGTAATGTCATGAATCATGAAGAT 1860
consensus_184#1 AGACAAGGGGCTGTGCTGCCCGCCGAGGCTTTTGGTGGTAATGTCATGAATCATGAAGAT 68
* * ******** * ***************************************
consensus_184#0 CCAAGTGGCGTCTCTTATGAGTTTATCCAGTTCATTATTCAGTCTAAAGGCGAGCTAAGT 1920
consensus_184#1 CCAAGTGGGGTCTTTTATGAGTTTATCCAGTTCATTATTCAGTCTAAAGGCGAGCTAAGT 128
******** **** **********************************************
consensus_184#0 TGCTTTGGATGAGACCGTATAGTTTCTGGGAACTGAAATGTTTGTTCATGGGGTGAAGGT 1980
consensus_184#1 TGCTTTGGATGAGACCGTATAGTTTTTGGGAACTGAAATGTTTGTTCATGGGGTGAAGGT 188
************************* **********************************
consensus_184#0 TATGGCAGAAGCACTCGAGTATTTCCATGTAGGGATTGTCGTATATATGTAATCTTTTGA 2040
consensus_184#1 TATGGCAAAAGCCCTCGAGTATTTCCATGTAGGGATTGTGGTATATATGTAATCTTTTGA 248
******* **** ************************** ********************
consensus_184#0 AGGGTAATCAGTGATGTAAATAATAAGAGTGGCATAAATTTTATCAAGGAGTATTAAATT 2100
consensus_184#1 AGGGTAATCAGTGATGTAAATAATAAGAGTGGCATAAATTTTATCAAGGAGTTTTAAAAA 308
**************************************************** *****
consensus_184#0 GATTGTGCTGTTTTTTGGGGGATATGCGACAGTTCTGATAGAATAC 2146
consensus_184#1 AAAAAAAAAAAAAAAAA----------------------------- 325
*
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||