cluster # 1840

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Oryza sativa
cluster # 1840 cluster # 1840 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1840#0 length = 615 sequences # 1

consensus_1840#1 length = 245 sequences # 1

consensusID : consensus_1840#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 615
fasta sequence

                              [ACCTCCCTGACCTTATCGGCAGCGCCATCCCATCCCTTGCCGTCCCCCCAAGAGCTCACCCCTCCGCCTCGCTTCTTCATCTCCTCTCCTTTAATTCGGCCCCGCGACGCCCGCTTCACCCCCATCCTACACCGCGTGCCTCCTTACCTTCTCTTTGTTGGAATAACGATCGTTTCGCTTGCTGCTCCGGGGAGGTTTTCTTGGGTTATTTATCGGCTGGTGAGGTTCGTCCCCGCCAGGTTTCTGCCGCGCGCCGCCGGGGTGTCGACGTGTCGAGCGGTGCGTGGAGGAGGAGAAGCGTGCGGCGGAGGTTGTGGTGGTGATGGTGAGGAGCGAGTTGTACAGGAGGAGGGGTACCGATCAACCGGGAAGCTGGCGGTCGGGAAGTGGTGAGAGCGGCCAGATGACACGCCCATGTCCGTGATGTACCCTGGCGGAGGCGGCTGGGGCGCCGGTCGCTCACGGAAGTTCCACCCTTTGCTCCGACCGGAGAAACCGCCGCCGCTGGTACCGATGTCGCCCGACACCCCTGGCCAAGATGCAACCATCCTACATTGTCCCCCCACAAGATCCCCCTGGCTCTACGAACACACCTGCCGATGATGCCACACCAGT]

[+] EMBL CA756425             [ACCTCCCTGACCTTATCGGCAGCGCCATCCCATCCCTTGCCGTCCCCCCAAGAGCTCACCCCTCCGCCTCGCTTCTTCATCTCCTCTCCTTTAATTCGGCCCCGCGACGCCCGCTTCACCCCCATCCTACACCGCGTGCCTCCTTACCTTCTCTTTGTTGGAATAACGATCGTTTCGCTTGCTGCTCCGGGGAGGTTTTCTTGGGTTATTTATCGGCTGGTGAGGTTCGTCCCCGCCAGGTTTCTGCCGCGCGCCGCCGGGGTGTCGACGTGTCGAGCGGTGCGTGGAGGAGGAGAAGCGTGCGGCGGAGGTTGTGGTGGTGATGGTGAGGAGCGAGTTGTACAGGAGGAGGGGTACCGATCAACCGGGAAGCTGGCGGTCGGGAAGTGGTGAGAGCGGCCAGATGACACGCCCATGTCCGTGATGTACCCTGGCGGAGGCGGCTGGGGCGCCGGTCGCTCACGGAAGTTCCACCCTTTGCTCCGACCGGAGAAACCGCCGCCGCTGGTACCGATGTCGCCCGACACCCCTGGCCAAGATGCAACCATCCTACATTGTCCCCCCACAAGATCCCCCTGGCTCTACGAACACACCTGCCGATGATGCCACACCAGT]




>consensus_1840#0
ACCTCCCTGACCTTATCGGCAGCGCCATCCCATCCCTTGCCGTCCCCCCAAGAGCTCACC
CCTCCGCCTCGCTTCTTCATCTCCTCTCCTTTAATTCGGCCCCGCGACGCCCGCTTCACC
CCCATCCTACACCGCGTGCCTCCTTACCTTCTCTTTGTTGGAATAACGATCGTTTCGCTT
GCTGCTCCGGGGAGGTTTTCTTGGGTTATTTATCGGCTGGTGAGGTTCGTCCCCGCCAGG
TTTCTGCCGCGCGCCGCCGGGGTGTCGACGTGTCGAGCGGTGCGTGGAGGAGGAGAAGCG
TGCGGCGGAGGTTGTGGTGGTGATGGTGAGGAGCGAGTTGTACAGGAGGAGGGGTACCGA
TCAACCGGGAAGCTGGCGGTCGGGAAGTGGTGAGAGCGGCCAGATGACACGCCCATGTCC
GTGATGTACCCTGGCGGAGGCGGCTGGGGCGCCGGTCGCTCACGGAAGTTCCACCCTTTG
CTCCGACCGGAGAAACCGCCGCCGCTGGTACCGATGTCGCCCGACACCCCTGGCCAAGAT
GCAACCATCCTACATTGTCCCCCCACAAGATCCCCCTGGCTCTACGAACACACCTGCCGA
TGATGCCACACCAGT

consensusID : consensus_1840#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 245
fasta sequence

                              [NANGNCTCACCCCTCCGCCTCGNTTCTTCATCTCCTCTCCTTTAATTCGGCCCCGCNCCGCCCGCTTCACCCCCATCCTACACCGCGTGCCTCCTTACCTTCTCTTTGTTGGAATAACGATCGTTTCGCTTGCTGCTCCGGGGAGGTTTTTNTTGGGCGATCGATCGGCTGGGCAGGTTCGTCGGAGGGAGGTTTCTNCCGCGCGCCGCCGGGGTGTCGACGTGTCGAGCNGTGCGTGGAGGANG]

[+] EMBL OSC182               [NANGNCTCACCCCTCCGCCTCGNTTCTTCATCTCCTCTCCTTTAATTCGGCCCCGCNCCGCCCGCTTCACCCCCATCCTACACCGCGTGCCTCCTTACCTTCTCTTTGTTGGAATAACGATCGTTTCGCTTGCTGCTCCGGGGAGGTTTTTNTTGGGCGATCGATCGGCTGGGCAGGTTCGTCGGAGGGAGGTTTCTNCCGCGCGCCGCCGGGGTGTCGACGTGTCGAGCNGTGCGTGGAGGANG]




>consensus_1840#1
NANGNCTCACCCCTCCGCCTCGNTTCTTCATCTCCTCTCCTTTAATTCGGCCCCGCNCCG
CCCGCTTCACCCCCATCCTACACCGCGTGCCTCCTTACCTTCTCTTTGTTGGAATAACGA
TCGTTTCGCTTGCTGCTCCGGGGAGGTTTTTNTTGGGCGATCGATCGGCTGGGCAGGTTC
GTCGGAGGGAGGTTTCTNCCGCGCGCCGCCGGGGTGTCGACGTGTCGAGCNGTGCGTGGA
GGANG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1840#0      ACCTCCCTGACCTTATCGGCAGCGCCATCCCATCCCTTGCCGTCCCCCCAAGAGCTCACC 60
consensus_1840#1      -------------------------------------------------NANGNCTCACC 11
                                                                        *   ******

consensus_1840#0      CCTCCGCCTCGCTTCTTCATCTCCTCTCCTTTAATTCGGCCCCGCGACGCCCGCTTCACC 120
consensus_1840#1      CCTCCGCCTCGNTTCTTCATCTCCTCTCCTTTAATTCGGCCCCGCNCCGCCCGCTTCACC 71
                      *********** *********************************  *************

consensus_1840#0      CCCATCCTACACCGCGTGCCTCCTTACCTTCTCTTTGTTGGAATAACGATCGTTTCGCTT 180
consensus_1840#1      CCCATCCTACACCGCGTGCCTCCTTACCTTCTCTTTGTTGGAATAACGATCGTTTCGCTT 131
                      ************************************************************

consensus_1840#0      GCTGCTCCGGGGAGGTTTT-CTTGGGTTATTTATCGGCTGGTGAGGTTCGTCCCCGCCAG 239
consensus_1840#1      GCTGCTCCGGGGAGGTTTTTNTTGGGCGATCGATCGGCTGGGCAGGTTCGTCGGAGGGAG 191
                      *******************  *****  **  *********  *********   *  **

consensus_1840#0      GTTTCTGCCGCGCGCCGCCGGGGTGTCGACGTGTCGAGCGGTGCGTGGAGGAGGAGAAGC 299
consensus_1840#1      GTTTCTNCCGCGCGCCGCCGGGGTGTCGACGTGTCGAGCNGTGCGTGGAGGANG------ 245
                      ****** ******************************** ************ *      

consensus_1840#0      GTGCGGCGGAGGTTGTGGTGGTGATGGTGAGGAGCGAGTTGTACAGGAGGAGGGGTACCG 359
consensus_1840#1      ------------------------------------------------------------
                                                                                  

consensus_1840#0      ATCAACCGGGAAGCTGGCGGTCGGGAAGTGGTGAGAGCGGCCAGATGACACGCCCATGTC 419
consensus_1840#1      ------------------------------------------------------------
                                                                                  

consensus_1840#0      CGTGATGTACCCTGGCGGAGGCGGCTGGGGCGCCGGTCGCTCACGGAAGTTCCACCCTTT 479
consensus_1840#1      ------------------------------------------------------------
                                                                                  

consensus_1840#0      GCTCCGACCGGAGAAACCGCCGCCGCTGGTACCGATGTCGCCCGACACCCCTGGCCAAGA 539
consensus_1840#1      ------------------------------------------------------------
                                                                                  

consensus_1840#0      TGCAACCATCCTACATTGTCCCCCCACAAGATCCCCCTGGCTCTACGAACACACCTGCCG 599
consensus_1840#1      ------------------------------------------------------------
                                                                                  

consensus_1840#0      ATGATGCCACACCAGT 615
consensus_1840#1      ----------------