These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1847#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [ACTATTCAATAGTTCCATCATGAAACTCGAAATCTGTAATTACAGTGGTTATAAAATCTATCCTGGTCACGGTAAACGTGCCGTTAAAGTCGATGGTAAAATTCATATTTACCTCAATCAAAAATGTCAACGTTCAGCCGATATGAGACGAAATCCACGTCGTGTTACATGGACTGTTCTCTATCGACGAAAACATAAGAAAGGTGCAGCTGAACAAGAAATTAAAAAACGAACACGTCGTACTGTCAAATTTCAACGAGCTATCACAGGTGTTACTTGGAATGAAATTCTTGCTAAACGAAACCAACAACCAGAATTTCGTAAAGCTCAACGACAAGATGCTATCAATGCAGCTAAACAAGCTAAAAAGGTCAAAGCACAACAAAAGAAAGCTTCACAACCAGCTGGTGTTAAAGCTGCTAAACCAGTTAAGAAACAAGAAAAAATCCCAAAGAATATACCAAAAGGTGCACCCAAAAACATCTCTCAACGTTAAAACAAAGTCGCTAATCGATCGTCATCAACAACAACAATAATATGATTTTGTTTTCTATCGTTGAGTGTATTTCTCATCTGTTTTTGTTTTTGTTTTCAAAATATCATTAGATTCTAA] [+] EMBL CA756401 [ACTATTCAATAGTTCCATCATGAAACTCGAAATCTGTAATTACAGTGGTTATAAAATCTATCCTGGTCACGGTAAACGTGCCGTTAAAGTCGATGGTAAAATTCATATTTACCTCAATCAAAAATGTCAACGTTCAGCCGATATGAGACGAAATCCACGTCGTGTTACATGGACTGTTCTCTATCGACGAAAACATAAGAAAGGTGCAGCTGAACAAGAAATTAAAAAACGAACACGTCGTACTGTCAAATTTCAACGAGCTATCACAGGTGTTACTTGGAATGAAATTCTTGCTAAACGAAACCAACAACCAGAATTTCGTAAAGCTCAACGACAAGATGCTATCAATGCAGCTAAACAAGCTAAAAAGGTCAAAGCACAACAAAAGAAAGCTTCACAACCAGCTGGTGTTAAAGCTGCTAAACCAGTTAAGAAACAAGAAAAAATCCCAAAGAATATACCAAAAGGTGCACCCAAAAACATCTCTCAACGTTAAAACAAAGTCGCTAATCGATCGTCATCAACAACAACAATAATATGATTTTGTTTTCTATCGTTGAGTGTATTTCTCATCTGTTTTTGTTTTTGTTTTCAAAATATCATTAGATTCTAA] consensusID : consensus_1847#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 602 fasta sequence [AAAAGGAGAAGTCTATCGAGTCATCATGAAACTCGAAATTTGCAACTACAGTGGATATAAAATCTATCCAGGTCATGGTAAACGTGCTGTTAAAATCGACGGCAAGATTCATATTTACTTGAACTCGAAATGTCAACGATCGGCTGATATGCGTCGTAATCCACGTCGTGTAACATGGACAGTTTTATATCGTCGTAAACATAAGAAAGGTTCAACTGAACAAGAAGTCAAAAAACGAACACGACGAACAGTCAAATTTCAACGAGCCATCACCGGTGTTACCTGGAATGAAATTTTAGCTAAACGTAATCAACAACCAGAATTCCGTAAAGCTCAACGACAAGATGCTATCAATGCAGCTAAGCAAGTTAAGAAAGCTAAAGCTCAACAAAAGAAAGCTGCTCAACCAGCTGGTCTTAAAGCAAAACAACCCGTTAAAAAACAAGAGAAAATTCAAAAAAATATTCCTAAAGTTGCACAAAAGAAGAGCACACAACGTTAAATTAACTCCATCGTCGCTTATCGTTTTCTTGTTCGTTCAACTTTTCGTATCTCTGTGTCGAAAAGATTTGACTTATTTTTTGTTTTCTTTTTCTTCGATT] [+] EMBL CA756414 [AAAAGGAGAAGTCTATCGAGTCATCATGAAACTCGAAATTTGCAACTACAGTGGATATAAAATCTATCCAGGTCATGGTAAACGTGCTGTTAAAATCGACGGCAAGATTCATATTTACTTGAACTCGAAATGTCAACGATCGGCTGATATGCGTCGTAATCCACGTCGTGTAACATGGACAGTTTTATATCGTCGTAAACATAAGAAAGGTTCAACTGAACAAGAAGTCAAAAAACGAACACGACGAACAGTCAAATTTCAACGAGCCATCACCGGTGTTACCTGGAATGAAATTTTAGCTAAACGTAATCAACAACCAGAATTCCGTAAAGCTCAACGACAAGATGCTATCAATGCAGCTAAGCAAGTTAAGAAAGCTAAAGCTCAACAAAAGAAAGCTGCTCAACCAGCTGGTCTTAAAGCAAAACAACCCGTTAAAAAACAAGAGAAAATTCAAAAAAATATTCCTAAAGTTGCACAAAAGAAGAGCACACAACGTTAAATTAACTCCATCGTCGCTTATCGTTTTCTTGTTCGTTCAACTTTTCGTATCTCTGTGTCGAAAAGATTTGACTTATTTTTTGTTTTCTTTTTCTTCGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1847#0 ------ACTATTCAATAGTTCCATCATGAAACTCGAAATCTGTAATTACAGTGGTTATAA 54 consensus_1847#1 AAAAGGAGAAGTCTATCGAGTCATCATGAAACTCGAAATTTGCAACTACAGTGGATATAA 60 * * ** ** * ****************** ** ** ******** ***** consensus_1847#0 AATCTATCCTGGTCACGGTAAACGTGCCGTTAAAGTCGATGGTAAAATTCATATTTACCT 114 consensus_1847#1 AATCTATCCAGGTCATGGTAAACGTGCTGTTAAAATCGACGGCAAGATTCATATTTACTT 120 ********* ***** *********** ****** **** ** ** ************ * consensus_1847#0 CAATCAAAAATGTCAACGTTCAGCCGATATGAGACGAAATCCACGTCGTGTTACATGGAC 174 consensus_1847#1 GAACTCGAAATGTCAACGATCGGCTGATATGCGTCGTAATCCACGTCGTGTAACATGGAC 180 ** *********** ** ** ****** * ** ************** ******** consensus_1847#0 TGTTCTCTATCGACGAAAACATAAGAAAGGTGCAGCTGAACAAGAAATTAAAAAACGAAC 234 consensus_1847#1 AGTTTTATATCGTCGTAAACATAAGAAAGGTTCAACTGAACAAGAAGTCAAAAAACGAAC 240 *** * ***** ** *************** ** *********** * *********** consensus_1847#0 ACGTCGTACTGTCAAATTTCAACGAGCTATCACAGGTGTTACTTGGAATGAAATTCTTGC 294 consensus_1847#1 ACGACGAACAGTCAAATTTCAACGAGCCATCACCGGTGTTACCTGGAATGAAATTTTAGC 300 *** ** ** ***************** ***** ******** ************ * ** consensus_1847#0 TAAACGAAACCAACAACCAGAATTTCGTAAAGCTCAACGACAAGATGCTATCAATGCAGC 354 consensus_1847#1 TAAACGTAATCAACAACCAGAATTCCGTAAAGCTCAACGACAAGATGCTATCAATGCAGC 360 ****** ** ************** *********************************** consensus_1847#0 TAAACAAGCTAAAAAGGTCAAAGCACAACAAAAGAAAGCTTCACAACCAGCTGGTGTTAA 414 consensus_1847#1 TAAGCAAGTTAAGAAAGCTAAAGCTCAACAAAAGAAAGCTGCTCAACCAGCTGGTCTTAA 420 *** **** *** ** * ***** *************** * ************ **** consensus_1847#0 AGCTGCTAAACCAGTTAAGAAACAAGAAAAAATCCCAAAGAATATACCAAAAGGTGCACC 474 consensus_1847#1 AGCAAAACAACCCGTTAAAAAACAAGAGAAAATTCAAAAAAATATTCCTAAAGTTGCACA 480 *** **** ***** ******** ***** * *** ***** ** **** ***** consensus_1847#0 CAAAAACATCTCTCAACGTTAAAACAAAGTCGCTAATCGATCGTCATCAACAACAACAAT 534 consensus_1847#1 AAAGAAGAGCACACAACGTTAAATTAACTCCATCG-TCGCTTATCGTTTTCTTGTTCGTT 539 ** ** * * * ********** ** * *** * ** * * * * consensus_1847#0 AATATGATTTTGTTTTCTATCGTTGAGTGTATTT--CTCATCTGTTTTTGTTTTTGTTTT 592 consensus_1847#1 CAACT--TTTCGTATCTCTGTGTCGAAAAGATTTGACTTATTTTTTGTTTTCTTTTTCTT 597 * * *** ** * ** ** **** ** ** * ** ** * *** * ** consensus_1847#0 CAAAATATCATTAGATTCTAA 613 consensus_1847#1 CGATT---------------- 602 * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||