cluster # 186

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 186 cluster # 186 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_186#0 length = 1644 sequences # 1

consensus_186#1 length = 693 sequences # 1

consensusID : consensus_186#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1644
fasta sequence

                              [TCAATTGGCGAACGGCGACGGCGGCGGCGACCTGGTGGCCAGTTGGCACCTTGTCGATTTCCTTCCAACCTACCTTCCTTCTCCCTCTATCTTCTCCATCTTCCACCACTTGTATCCCTTAGTTCATCCTCCTTCCACCTCTATTTACTGGAGTATGGTTGCTATTGTATTGGATGCTTGCATATTTGAGTGGAATTGAGATCAGAGGTGGCCTGGCCAGCCGAGGTCGCGACCGATGTGCTTGCAATCAGCGGCAAAGTGGAAGCTAGAGCAGCCGGATGTCAGCGAGAGCATGCACTGCCTCAATCATGAGCTTGCATCGCCGAGCTTAATTCGGAGTCTGCCATCAACATAGGTCATCTTTCCTAACCAACCTCAATTTGTTTACTTGGTCCACATCTTTGGCTTCGTACCTCAAGTTTGATGTAATTCCTTCATTTATGCGCCGGTTAAGTTATTGCTTGGTTTGCTCTTGTTATTAATGAATTCTTACTATTTATATGAGCATCTTACATGACAAATGCAGATTGCTACTTACTTTGTCTAGGTATATTCACAAGGTCATTTTTCTTAAAAGTTGAATTGTTCCCTCTAAATGAAGGCTTATTCAACCTATAGGAATAAGTTTTTAAAAGTTGAATTGTTCCCTAGCCTGAAGCAAATCTCTTTCCTGTTTGAACTCTACAGGAATGAGCAGTAATGAGGCTTGAAGGTGATACAGTTATCGACTTGAAATTGTAGTCGGATAAAGTATTTGATTATTTGCCTCCACATTTGATTCGTATATATTAGTTTAACAAATACATAATTGAAAGTGAAGGATCTGACCTATAACTGACGCCTAATGGTAGGCATTTAAAGGAATCTGAAATTGTAACTAACTTTCTTTTGTACGAAAGAATTCAAATACATAAATGTGCAGATGCAGCGAGGCTTTTTCAGAAACAAATATGATTCTTACTGTTAAAATATCCTCTACCTGGCAGACATCTAAGGAAGTGTACTCATTTGAATTCTGATTTTGCTTTTTCTCAGGGTTGTTTCATGTTCTAAAGAGTGTCATCTGCAATGCGATAGCTTTAGAGAGATGAAAGTCCAATTATGCTAGATTATCAGTTTTTTTGCAAGGATGCTAGAATATCACTTTGACTTGTTTGGTACTGTCCAATGCCAATAGTGGCAATGAAGACAACTCTTTATACATCATCAGAGGAAATGCTGACTCCATTATTTGTGATAGAAAATGTTAAACATGGTGGAAGCAGGGGAGTAGAATGTGGAGCAAATATAAATATATTTTGAAGCTAGGCAGGCCATGAGGGTGCTCATACAAATTTCTATACTCTAGCTAGCGCTGGAATGGTCCTACTTCTTTCATTTACAACATATCAGCTTGGTTTCCCATTTGGACTTAAAACTGTAAATATGGCAAGCATGTAGATAAAGTTGATCCTACATGCATGCCACAACTTATCAGACATACCGTCTGCATACTCTGATTGTACATTCATGTCCATACAGGGGAGTAAGTTCGGTAAATTCATCTTAGTGAACAGAACATTTGTGCATTTCATTCAATTTTTTGTTTTGTGGTGATGAGAAGACTATGTCATTTGTTATTCTTCTATAAGAAAATAATTTGTT]

[+] EMBL AK064422             [TCAATTGGCGAACGGCGACGGCGGCGGCGACCTGGTGGCCAGTTGGCACCTTGTCGATTTCCTTCCAACCTACCTTCCTTCTCCCTCTATCTTCTCCATCTTCCACCACTTGTATCCCTTAGTTCATCCTCCTTCCACCTCTATTTACTGGAGTATGGTTGCTATTGTATTGGATGCTTGCATATTTGAGTGGAATTGAGATCAGAGGTGGCCTGGCCAGCCGAGGTCGCGACCGATGTGCTTGCAATCAGCGGCAAAGTGGAAGCTAGAGCAGCCGGATGTCAGCGAGAGCATGCACTGCCTCAATCATGAGCTTGCATCGCCGAGCTTAATTCGGAGTCTGCCATCAACATAGGTCATCTTTCCTAACCAACCTCAATTTGTTTACTTGGTCCACATCTTTGGCTTCGTACCTCAAGTTTGATGTAATTCCTTCATTTATGCGCCGGTTAAGTTATTGCTTGGTTTGCTCTTGTTATTAATGAATTCTTACTATTTATATGAGCATCTTACATGACAAATGCAGATTGCTACTTACTTTGTCTAGGTATATTCACAAGGTCATTTTTCTTAAAAGTTGAATTGTTCCCTCTAAATGAAGGCTTATTCAACCTATAGGAATAAGTTTTTAAAAGTTGAATTGTTCCCTAGCCTGAAGCAAATCTCTTTCCTGTTTGAACTCTACAGGAATGAGCAGTAATGAGGCTTGAAGGTGATACAGTTATCGACTTGAAATTGTAGTCGGATAAAGTATTTGATTATTTGCCTCCACATTTGATTCGTATATATTAGTTTAACAAATACATAATTGAAAGTGAAGGATCTGACCTATAACTGACGCCTAATGGTAGGCATTTAAAGGAATCTGAAATTGTAACTAACTTTCTTTTGTACGAAAGAATTCAAATACATAAATGTGCAGATGCAGCGAGGCTTTTTCAGAAACAAATATGATTCTTACTGTTAAAATATCCTCTACCTGGCAGACATCTAAGGAAGTGTACTCATTTGAATTCTGATTTTGCTTTTTCTCAGGGTTGTTTCATGTTCTAAAGAGTGTCATCTGCAATGCGATAGCTTTAGAGAGATGAAAGTCCAATTATGCTAGATTATCAGTTTTTTTGCAAGGATGCTAGAATATCACTTTGACTTGTTTGGTACTGTCCAATGCCAATAGTGGCAATGAAGACAACTCTTTATACATCATCAGAGGAAATGCTGACTCCATTATTTGTGATAGAAAATGTTAAACATGGTGGAAGCAGGGGAGTAGAATGTGGAGCAAATATAAATATATTTTGAAGCTAGGCAGGCCATGAGGGTGCTCATACAAATTTCTATACTCTAGCTAGCGCTGGAATGGTCCTACTTCTTTCATTTACAACATATCAGCTTGGTTTCCCATTTGGACTTAAAACTGTAAATATGGCAAGCATGTAGATAAAGTTGATCCTACATGCATGCCACAACTTATCAGACATACCGTCTGCATACTCTGATTGTACATTCATGTCCATACAGGGGAGTAAGTTCGGTAAATTCATCTTAGTGAACAGAACATTTGTGCATTTCATTCAATTTTTTGTTTTGTGGTGATGAGAAGACTATGTCATTTGTTATTCTTCTATAAGAAAATAATTTGTT]




>consensus_186#0
TCAATTGGCGAACGGCGACGGCGGCGGCGACCTGGTGGCCAGTTGGCACCTTGTCGATTT
CCTTCCAACCTACCTTCCTTCTCCCTCTATCTTCTCCATCTTCCACCACTTGTATCCCTT
AGTTCATCCTCCTTCCACCTCTATTTACTGGAGTATGGTTGCTATTGTATTGGATGCTTG
CATATTTGAGTGGAATTGAGATCAGAGGTGGCCTGGCCAGCCGAGGTCGCGACCGATGTG
CTTGCAATCAGCGGCAAAGTGGAAGCTAGAGCAGCCGGATGTCAGCGAGAGCATGCACTG
CCTCAATCATGAGCTTGCATCGCCGAGCTTAATTCGGAGTCTGCCATCAACATAGGTCAT
CTTTCCTAACCAACCTCAATTTGTTTACTTGGTCCACATCTTTGGCTTCGTACCTCAAGT
TTGATGTAATTCCTTCATTTATGCGCCGGTTAAGTTATTGCTTGGTTTGCTCTTGTTATT
AATGAATTCTTACTATTTATATGAGCATCTTACATGACAAATGCAGATTGCTACTTACTT
TGTCTAGGTATATTCACAAGGTCATTTTTCTTAAAAGTTGAATTGTTCCCTCTAAATGAA
GGCTTATTCAACCTATAGGAATAAGTTTTTAAAAGTTGAATTGTTCCCTAGCCTGAAGCA
AATCTCTTTCCTGTTTGAACTCTACAGGAATGAGCAGTAATGAGGCTTGAAGGTGATACA
GTTATCGACTTGAAATTGTAGTCGGATAAAGTATTTGATTATTTGCCTCCACATTTGATT
CGTATATATTAGTTTAACAAATACATAATTGAAAGTGAAGGATCTGACCTATAACTGACG
CCTAATGGTAGGCATTTAAAGGAATCTGAAATTGTAACTAACTTTCTTTTGTACGAAAGA
ATTCAAATACATAAATGTGCAGATGCAGCGAGGCTTTTTCAGAAACAAATATGATTCTTA
CTGTTAAAATATCCTCTACCTGGCAGACATCTAAGGAAGTGTACTCATTTGAATTCTGAT
TTTGCTTTTTCTCAGGGTTGTTTCATGTTCTAAAGAGTGTCATCTGCAATGCGATAGCTT
TAGAGAGATGAAAGTCCAATTATGCTAGATTATCAGTTTTTTTGCAAGGATGCTAGAATA
TCACTTTGACTTGTTTGGTACTGTCCAATGCCAATAGTGGCAATGAAGACAACTCTTTAT
ACATCATCAGAGGAAATGCTGACTCCATTATTTGTGATAGAAAATGTTAAACATGGTGGA
AGCAGGGGAGTAGAATGTGGAGCAAATATAAATATATTTTGAAGCTAGGCAGGCCATGAG
GGTGCTCATACAAATTTCTATACTCTAGCTAGCGCTGGAATGGTCCTACTTCTTTCATTT
ACAACATATCAGCTTGGTTTCCCATTTGGACTTAAAACTGTAAATATGGCAAGCATGTAG
ATAAAGTTGATCCTACATGCATGCCACAACTTATCAGACATACCGTCTGCATACTCTGAT
TGTACATTCATGTCCATACAGGGGAGTAAGTTCGGTAAATTCATCTTAGTGAACAGAACA
TTTGTGCATTTCATTCAATTTTTTGTTTTGTGGTGATGAGAAGACTATGTCATTTGTTAT
TCTTCTATAAGAAAATAATTTGTT

consensusID : consensus_186#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 693
fasta sequence

                              [ACCTTCCTTCTCCCTCTATCTTCTCCATCTTCCACCACTTGTATCCCTTAGTTCATCCTCCTTCCACCTCTATTTACTGGAGTATGGTTGCTATTGTATTGGATGCTTGCATATNTGAGTGGAATTGAGATCAGAGGTTGGAGTTCCTAACACACCGCCAATGTTCGGCCCTGCGACATGAAAGGTAGGTTTCCTCCAAGACCAGCAGCAACGGTGTATAGGCTACACAGGTGATGTCACAACCATGCCACTTGCCTGCTGCTGGTGCCTCCACCTCCCTAACTCACGGAGCATTTCTTCAGATCTACAGCCATGCCATGCTGAGTCAGGTCCGATCTACAGCCATGCCATGCGGAATCAGGGTGCCGTTGCTCTCCTGGTTTGGAGGTTGGACCATTTTCTAAGTCATCTTTAGATTTCATAAAAATAATATTAAAGTGATTAGAAGAAATTAAGTTATCCTAATTCGTGTCTCAAAGTTGGTAATCGACAACACACTTCGTTAGAAGATAATATGTTTTTTTTCATCAAAATCAACAGCTCTCGAGTCCAAACATCATTGGAAGCTTTTTGGCTCCATGGCAGATTATTTTTTCTTTTATCCCATAGTTATTTTTCTGTGTCGCACTGCTCTACCTCTGGAATTTTCATAATTCCATAATTCAAGCAAAAGTGTTTCAATAAAAAAAAAAA]

[-] EMBL CA760847             [ACCTTCCTTCTCCCTCTATCTTCTCCATCTTCCACCACTTGTATCCCTTAGTTCATCCTCCTTCCACCTCTATTTACTGGAGTATGGTTGCTATTGTATTGGATGCTTGCATATNTGAGTGGAATTGAGATCAGAGGTTGGAGTTCCTAACACACCGCCAATGTTCGGCCCTGCGACATGAAAGGTAGGTTTCCTCCAAGACCAGCAGCAACGGTGTATAGGCTACACAGGTGATGTCACAACCATGCCACTTGCCTGCTGCTGGTGCCTCCACCTCCCTAACTCACGGAGCATTTCTTCAGATCTACAGCCATGCCATGCTGAGTCAGGTCCGATCTACAGCCATGCCATGCGGAATCAGGGTGCCGTTGCTCTCCTGGTTTGGAGGTTGGACCATTTTCTAAGTCATCTTTAGATTTCATAAAAATAATATTAAAGTGATTAGAAGAAATTAAGTTATCCTAATTCGTGTCTCAAAGTTGGTAATCGACAACACACTTCGTTAGAAGATAATATGTTTTTTTTCATCAAAATCAACAGCTCTCGAGTCCAAACATCATTGGAAGCTTTTTGGCTCCATGGCAGATTATTTTTTCTTTTATCCCATAGTTATTTTTCTGTGTCGCACTGCTCTACCTCTGGAATTTTCATAATTCCATAATTCAAGCAAAAGTGTTTCAATAAAAAAAAAAA]




>consensus_186#1
ACCTTCCTTCTCCCTCTATCTTCTCCATCTTCCACCACTTGTATCCCTTAGTTCATCCTC
CTTCCACCTCTATTTACTGGAGTATGGTTGCTATTGTATTGGATGCTTGCATATNTGAGT
GGAATTGAGATCAGAGGTTGGAGTTCCTAACACACCGCCAATGTTCGGCCCTGCGACATG
AAAGGTAGGTTTCCTCCAAGACCAGCAGCAACGGTGTATAGGCTACACAGGTGATGTCAC
AACCATGCCACTTGCCTGCTGCTGGTGCCTCCACCTCCCTAACTCACGGAGCATTTCTTC
AGATCTACAGCCATGCCATGCTGAGTCAGGTCCGATCTACAGCCATGCCATGCGGAATCA
GGGTGCCGTTGCTCTCCTGGTTTGGAGGTTGGACCATTTTCTAAGTCATCTTTAGATTTC
ATAAAAATAATATTAAAGTGATTAGAAGAAATTAAGTTATCCTAATTCGTGTCTCAAAGT
TGGTAATCGACAACACACTTCGTTAGAAGATAATATGTTTTTTTTCATCAAAATCAACAG
CTCTCGAGTCCAAACATCATTGGAAGCTTTTTGGCTCCATGGCAGATTATTTTTTCTTTT
ATCCCATAGTTATTTTTCTGTGTCGCACTGCTCTACCTCTGGAATTTTCATAATTCCATA
ATTCAAGCAAAAGTGTTTCAATAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_186#0      TCAATTGGCGAACGGCGACGGCGGCGGCGACCTGGTGGCCAGTTGGCACCTTGTCGATTT 60
consensus_186#1      ------------------------------------------------------------
                                                                                 

consensus_186#0      CCTTCCAACCTACCTTCCTTCTCCCTCTATCTTCTCCATCTTCCACCACTTGTATCCCTT 120
consensus_186#1      -----------ACCTTCCTTCTCCCTCTATCTTCTCCATCTTCCACCACTTGTATCCCTT 49
                                *************************************************

consensus_186#0      AGTTCATCCTCCTTCCACCTCTATTTACTGGAGTATGGTTGCTATTGTATTGGATGCTTG 180
consensus_186#1      AGTTCATCCTCCTTCCACCTCTATTTACTGGAGTATGGTTGCTATTGTATTGGATGCTTG 109
                     ************************************************************

consensus_186#0      CATATTTGAGTGGAATTGAGATCAGAGGTGGCCTGGCCAGCCGAGGTCGCGACCGATGTG 240
consensus_186#1      CATATNTGAGTGGAATTGAGATCAGAGGT----TGGAGTTCCTAACACACCGCCAATGTT 165
                     ***** ***********************    ***    ** *   * *  ** **** 

consensus_186#0      CTTGCAATCAGCGGCAAAGTGGAAGCTAGAGCAGC-CGGATGTCAGCGAGAGCA-TGCAC 298
consensus_186#1      CGGCC------CTGCGACATGAAAGGTAGGTTTCCTCCAAGACCAGCAGCAACGGTGTAT 219
                     *   *      * ** *  ** *** ***     * *  *   ****   * *  ** * 

consensus_186#0      TGCCTCAATCATGAGCTTGCATCGCCGAGCTTAATTCGGAGTCTGCCATCAACATAGGTC 358
consensus_186#1      AGGCT-ACACAGGTGATGTCACAACCATGCC--ACTTG---CCTGCTGCTGG--TGCCTC 271
                      * ** *  ** * * *  **   **  **   * * *    ****        *   **

consensus_186#0      ATCTTTCCTAACCAACCTCA-ATTTGTTTACTTGGTCCACATCTTTGGCTTCGTACCTCA 417
consensus_186#1      CACCTCCCTAACTCACGGAGCATTTCTTCA---GATCTACAGCCATGCCATGCTGAGTCA 328
                       * * ******  **     **** ** *   * ** *** *  ** * *  *   ***

consensus_186#0      AGTTTGATGTAATTCCTTCATTTATGCGCCGGTTAAGTTATTGCTTGGTTTGCTCTTGTT 477
consensus_186#1      GGTCCGATCTACAGCCATG--CCATGCGG-AATCAGGGTGCCG------TTGCTCTCCTG 379
                      **  *** **   ** *     *****    * * * *   *      *******  * 

consensus_186#0      ATTAATGAATTCTTACTATTTATATGAGCATCTT-ACATGACAAATGCAGATTGCTACTT 536
consensus_186#1      GTTTG-GAGGTTGGACCATTTTCTAAGTCATCTTTAGATTTCATA---AAAATAATATTA 435
                      **   **  *   ** ****       ****** * **  ** *   * * *  ** * 

consensus_186#0      ACTTTGTCTAGGTATATTCACAAGGTCATTTTTCTTAAAAGTTGAATTGTTCCCTCTAAA 596
consensus_186#1      AAGTGATTAGAAGAAATT----AAGTTATCCT------------AATTCGTGTCTCAAAG 479
                     *  *  *      * ***    * ** **  *            ****  *  *** ** 

consensus_186#0      TGAAGGCTTATTCAACCTATAGGAATAAGTTTTTAAAAGTTGAATTGTTCCCTAGCCT-G 655
consensus_186#1      TTGG----TAATCGAC-----AACACACTTCGTTAGAAGATAATATGTTTTTTTTCATCA 530
                     *       ** ** **        * *  *  *** *** * *  ****   *  * *  

consensus_186#0      AAGCAAATCTCTTTCCTGTTTGAACTCTACAGGAATGAGCAGTAATGAGGCTTGAAGGTG 715
consensus_186#1      AAATCAACAGCTCTCGAGTCCAAACATCATTGGAA------GCTTTTTGGCTCCATGGC- 583
                     **   **   ** **  **   ***   *  ****      *   *  ****  * **  

consensus_186#0      ATACAGTTATCGACTTGAAATTGTAGTCGGATAAAGTATTTGATTATTTGCCTCCACATT 775
consensus_186#1      AGATTATTTTTTCTTTTATCCCATAGT---------TATTT--TTCTGTGTCGCA----C 628
                     * *   ** *    ** *     ****         *****  ** * ** * *      

consensus_186#0      TGATTCGTATATATTAGTTTAACAAATACATAATTGAAAGTGAAGGATCTGACCTATAAC 835
consensus_186#1      TGCTCTACCTCTGGAATTTTCATAATTCCATAATTCAAGCAAAAGTGTTTCAATAAAAAA 688
                     ** *     * *   * *** * ** * ******* **    ***  * * *   * ** 

consensus_186#0      TGACGCCTAATGGTAGGCATTTAAAGGAATCTGAAATTGTAACTAACTTTCTTTTGTACG 895
consensus_186#1      AAAAA------------------------------------------------------- 693
                       *                                                         

consensus_186#0      AAAGAATTCAAATACATAAATGTGCAGATGCAGCGAGGCTTTTTCAGAAACAAATATGAT 955
consensus_186#1      ------------------------------------------------------------
                                                                                 

consensus_186#0      TCTTACTGTTAAAATATCCTCTACCTGGCAGACATCTAAGGAAGTGTACTCATTTGAATT 1015
consensus_186#1      ------------------------------------------------------------
                                                                                 

consensus_186#0      CTGATTTTGCTTTTTCTCAGGGTTGTTTCATGTTCTAAAGAGTGTCATCTGCAATGCGAT 1075
consensus_186#1      ------------------------------------------------------------
                                                                                 

consensus_186#0      AGCTTTAGAGAGATGAAAGTCCAATTATGCTAGATTATCAGTTTTTTTGCAAGGATGCTA 1135
consensus_186#1      ------------------------------------------------------------
                                                                                 

consensus_186#0      GAATATCACTTTGACTTGTTTGGTACTGTCCAATGCCAATAGTGGCAATGAAGACAACTC 1195
consensus_186#1      ------------------------------------------------------------
                                                                                 

consensus_186#0      TTTATACATCATCAGAGGAAATGCTGACTCCATTATTTGTGATAGAAAATGTTAAACATG 1255
consensus_186#1      ------------------------------------------------------------
                                                                                 

consensus_186#0      GTGGAAGCAGGGGAGTAGAATGTGGAGCAAATATAAATATATTTTGAAGCTAGGCAGGCC 1315
consensus_186#1      ------------------------------------------------------------
                                                                                 

consensus_186#0      ATGAGGGTGCTCATACAAATTTCTATACTCTAGCTAGCGCTGGAATGGTCCTACTTCTTT 1375
consensus_186#1      ------------------------------------------------------------
                                                                                 

consensus_186#0      CATTTACAACATATCAGCTTGGTTTCCCATTTGGACTTAAAACTGTAAATATGGCAAGCA 1435
consensus_186#1      ------------------------------------------------------------
                                                                                 

consensus_186#0      TGTAGATAAAGTTGATCCTACATGCATGCCACAACTTATCAGACATACCGTCTGCATACT 1495
consensus_186#1      ------------------------------------------------------------
                                                                                 

consensus_186#0      CTGATTGTACATTCATGTCCATACAGGGGAGTAAGTTCGGTAAATTCATCTTAGTGAACA 1555
consensus_186#1      ------------------------------------------------------------
                                                                                 

consensus_186#0      GAACATTTGTGCATTTCATTCAATTTTTTGTTTTGTGGTGATGAGAAGACTATGTCATTT 1615
consensus_186#1      ------------------------------------------------------------
                                                                                 

consensus_186#0      GTTATTCTTCTATAAGAAAATAATTTGTT 1644
consensus_186#1      -----------------------------