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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1862#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2126 fasta sequence
[TCAAGGTCAGGGAGAGCTGCTCCCTTGCTGGCCTTGAGATGTTTGCATTGGTTTTTTCCCTTTCCCTTTCTCTTTGGTGGTCATTAGGCCTACCTGATACTACTTGTAGTGAGTGAGTGATAAGTTGATAACACTTCTCCCTGCCCCAATTGTTTCCTTGTTCCTAGTAGAAGTAGAAGCTGGAAGCTGGTCTCTTTGGGTTTTGGAAGGCTTCATCTTTCCATTTTAGGTCCTGCAAGTGTGCTCAACAACTCAAGCTTCACTGTCTTCTTGGTTTCTACCTCTGGTTTTGATTATTATCACTAGTTTCTGCAATTCTTGGAGATTTCCGAGGCGGCCATGAGCGGCAATCCATCGTTCTCGCAGCTCGGTGCGGTGGACGCCGCCATGAACGGCGGCTACTTCATGGCGGCGAGCGGCAATGGCGCCGACGTGCCGCTGTTCCATCCGGCCATGGCGCCGCCGCATGATCACGGCGGGAGCTTCGGCTACGGCGACGCGGCGGCGGCGGCGATGGACGTCGGCGCGCACTTCGCGGCGGCGAACAACCTCGTGCTCGCGTCCCTGGCGACCCAGCTGTTCGGCGCCGCGCCGGCGGCGGCGGCGCACGGGCATGGCGACTACCTCGGCGCGACGACGCCGCCGGAGGAGGAGATGGGGGGCGGGTACGACGTCGCCGTCGGCGACAGCTCCGGCGGCGCGGTGAGCCTCGCGTGCCTCGGCCACGGCCAGCCGGGCGACATGGCGGCGGGGTGGTGCTCGACGTCGGCGAGGAAGCCGAGCTGCAACTGGAGCAGCAGCAACGCCGGTGTGCACGGTGGTTCGTATTACCTCGCCGGGGTGCCGGAGGCTGCCGGCTTCGTGTCCGCGGCGGCGGCGAGCGAGCTGTCGCTGAGCCTGTGCTCCAAGTCGTCCTCGGACAGCATGCTCAACGCCGGCGGCGACCAGTGCTCGTCGGCGGCGAGCCGTTCCGGGCTGACGCAGATGAGCAGGGTGGTGGTGGTGGAGCCCGAGCCGCCGCTCGTACCGTACTACCCGGCGGCGAACTTCGCCGTGGTGGTGGCGCGGTCCCGATACGCCGCGGTGGCGCAGCAGGTGCTCAACGACGCCGTCGGCTGCGTGCTGGGCGGCGTCGCGGACGCCGCCGCCGACTCGGCCAGCGGCGTCGACAGCGGCAGCTCGAGGCCGTCGAGCTGCTCGGTGGCCGGCGGCGCGCCGTCGTCCGCCGTGAGCTCCAACAACCAGCTCATCGCCTCCTCCGGCGAGCACACGCACGGCGGCGGCGACGCTTCGGCTCAGCGGCTCAGGAGCGAGCTCCTCACCATGCTCCAGCTGATGGATCAGAAGTACAACCAATGCCTCGACGAGATCCAGAGCACGACGGCGAGGTTCAACACCCTGACGCACGCCACGGCGCGCGCCGCCGGGATGAGCAGCAGCAGCATCTGCGCGCCGTTCGCGCACCGCGCCGTGTCGGCAATGTACCACGGCCTGAGGCGCCGCATTGCCGGCGAGATCATGTCCGCCGCCGCCGCGGCCGGCAGGCCTTGCCGCGGCGGCGAGTCGTCGTCGGCGGTGACCGGCGGCGAGAGGGAGCGGAGCTGGGAGTCGGCGTTCATCCAGAAGCACTGGGCGGTGCAGCAGCTGCGGCGCGGCGAGCAGCAGTGCTGGCGGCCGCAGCGCGGCCTCCCGGAGAAGTCCGTCGCCGTCCTCAAGGCCTGGATGTTCGAGAACTTCCTCCGCCCGTATCCGAAAGACAGCGAGAAGGAGATGCTCGCAGCAAGGAGCGGCCTCAGCAGGAACCAGGTGTCGAATTGGTTCATAAACGCTCGAGTTCGGCTATGGAAGCCAATGATCGAGGAGATGTGCGAGGAGCTGAAGAGGAGCTCGGGTGGTGGTGCTGGAAATCAAGCTCTAGCAATGGAGCATATGAACAGCCAAGATGTGGTCAGTTAACCAGTTAGAGCTTTGGCTTGGTTTGATGGCGATGTTAGCTGCGGATTAAGATCAATCAATGCCATTGATCTATTTATCGATCACCAATTGTAACTCAGTTTAATTCGATGGTTTCAGTATATATAAAAGCTGCCGGTGCAGTGATCGCATTTCGCGGTAGATCATGAGCA]
[+] EMBL AK109849 [TCAAGGTCAGGGAGAGCTGCTCCCTTGCTGGCCTTGAGATGTTTGCATTGGTTTTTTCCCTTTCCCTTTCTCTTTGGTGGTCATTAGGCCTACCTGATACTACTTGTAGTGAGTGAGTGATAAGTTGATAACACTTCTCCCTGCCCCAATTGTTTCCTTGTTCCTAGTAGAAGTAGAAGCTGGAAGCTGGTCTCTTTGGGTTTTGGAAGGCTTCATCTTTCCATTTTAGGTCCTGCAAGTGTGCTCAACAACTCAAGCTTCACTGTCTTCTTGGTTTCTACCTCTGGTTTTGATTATTATCACTAGTTTCTGCAATTCTTGGAGATTTCCGAGGCGGCCATGAGCGGCAATCCATCGTTCTCGCAGCTCGGTGCGGTGGACGCCGCCATGAACGGCGGCTACTTCATGGCGGCGAGCGGCAATGGCGCCGACGTGCCGCTGTTCCATCCGGCCATGGCGCCGCCGCATGATCACGGCGGGAGCTTCGGCTACGGCGACGCGGCGGCGGCGGCGATGGACGTCGGCGCGCACTTCGCGGCGGCGAACAACCTCGTGCTCGCGTCCCTGGCGACCCAGCTGTTCGGCGCCGCGCCGGCGGCGGCGGCGCACGGGCATGGCGACTACCTCGGCGCGACGACGCCGCCGGAGGAGGAGATGGGGGGCGGGTACGACGTCGCCGTCGGCGACAGCTCCGGCGGCGCGGTGAGCCTCGCGTGCCTCGGCCACGGCCAGCCGGGCGACATGGCGGCGGGGTGGTGCTCGACGTCGGCGAGGAAGCCGAGCTGCAACTGGAGCAGCAGCAACGCCGGTGTGCACGGTGGTTCGTATTACCTCGCCGGGGTGCCGGAGGCTGCCGGCTTCGTGTCCGCGGCGGCGGCGAGCGAGCTGTCGCTGAGCCTGTGCTCCAAGTCGTCCTCGGACAGCATGCTCAACGCCGGCGGCGACCAGTGCTCGTCGGCGGCGAGCCGTTCCGGGCTGACGCAGATGAGCAGGGTGGTGGTGGTGGAGCCCGAGCCGCCGCTCGTACCGTACTACCCGGCGGCGAACTTCGCCGTGGTGGTGGCGCGGTCCCGATACGCCGCGGTGGCGCAGCAGGTGCTCAACGACGCCGTCGGCTGCGTGCTGGGCGGCGTCGCGGACGCCGCCGCCGACTCGGCCAGCGGCGTCGACAGCGGCAGCTCGAGGCCGTCGAGCTGCTCGGTGGCCGGCGGCGCGCCGTCGTCCGCCGTGAGCTCCAACAACCAGCTCATCGCCTCCTCCGGCGAGCACACGCACGGCGGCGGCGACGCTTCGGCTCAGCGGCTCAGGAGCGAGCTCCTCACCATGCTCCAGCTGATGGATCAGAAGTACAACCAATGCCTCGACGAGATCCAGAGCACGACGGCGAGGTTCAACACCCTGACGCACGCCACGGCGCGCGCCGCCGGGATGAGCAGCAGCAGCATCTGCGCGCCGTTCGCGCACCGCGCCGTGTCGGCAATGTACCACGGCCTGAGGCGCCGCATTGCCGGCGAGATCATGTCCGCCGCCGCCGCGGCCGGCAGGCCTTGCCGCGGCGGCGAGTCGTCGTCGGCGGTGACCGGCGGCGAGAGGGAGCGGAGCTGGGAGTCGGCGTTCATCCAGAAGCACTGGGCGGTGCAGCAGCTGCGGCGCGGCGAGCAGCAGTGCTGGCGGCCGCAGCGCGGCCTCCCGGAGAAGTCCGTCGCCGTCCTCAAGGCCTGGATGTTCGAGAACTTCCTCCGCCCGTATCCGAAAGACAGCGAGAAGGAGATGCTCGCAGCAAGGAGCGGCCTCAGCAGGAACCAGGTGTCGAATTGGTTCATAAACGCTCGAGTTCGGCTATGGAAGCCAATGATCGAGGAGATGTGCGAGGAGCTGAAGAGGAGCTCGGGTGGTGGTGCTGGAAATCAAGCTCTAGCAATGGAGCATATGAACAGCCAAGATGTGGTCAGTTAACCAGTTAGAGCTTTGGCTTGGTTTGATGGCGATGTTAGCTGCGGATTAAGATCAATCAATGCCATTGATCTATTTATCGATCACCAATTGTAACTCAGTTTAATTCGATGGTTTCAGTATATATAAAAGCTGCCGGTGCAGTGATCGCATTTCGCGGTAGATCATGAGCA]
consensusID : consensus_1862#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence
[CTGCGGATTAAAGNTCAATCCAATGCCATTGATCTATTTAATCGATCACCAATTGTAACTCAGTTTAAATNCGATGGTTACAGTATATATAAAAAGCTGCCGGTGCNGTGATCGCATTTCGCGGTNGATCATGAGCACCTCATTGGGAGATCGATGCGAATTGCTGAGTTTTCAGTTGAGTAGGCTGCNGTAAAAAAATCAGTTAAAAAATTTGGGATTGATTGTTGTTAGTACTACCTCAGTTCCAAATTATAAGGATATTTAGGCTATTTAGTAAATAGTTCTGAGGTTGGCAATTTTTTTTTTTGAATTGCGTACGTCTTAGGGGCTCAAGATCCGCTCATATTTTCACATTGTTGATGTCCTAAGATCCGCTCATATTTTCACATTGTGCATTTGATTGGCTATGGAATCATTGAAATGATGGGATTCATTGGAAAAAAAAAA]
[+] EMBL C99429 [CTGCGGATTAAAGNTCAATCCAATGCCATTGATCTATTTAATCGATCACCAATTGTAACTCAGTTTAAATNCGATGGTTACAGTATATATAAAAAGCTGCCGGTGCNGTGATCGCATTTCGCGGTNGATCATGAGCACCTCATTGGGAGATCGATGCGAATTGCTGAGTTTTCAGTTGAGTAGGCTGCNGTAAAAAAATCAGTTAAAAAATTTGGGATTGATTGTTGTTAGTACTACCTCAGTTCCAAATTATAAGGATATTTAGGCTATTTAGTAAATAGTTCTGAGGTTGGCAATTTTTTTTTTTGAATTGCGTACGTCTTAGGGGCTCAAGATCCGCTCATATTTTCACATTGTTGATGTCCTAAGATCCGCTCATATTTTCACATTGTGCATTTGATTGGCTATGGAATCATTGAAATGATGGGATTCATTGGAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1862#0 TCAAGGTCAGGGAGAGCTGCTCCCTTGCTGGCCTTGAGATGTTTGCATTGGTTTTTTCCC 60
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 TTTCCCTTTCTCTTTGGTGGTCATTAGGCCTACCTGATACTACTTGTAGTGAGTGAGTGA 120
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 TAAGTTGATAACACTTCTCCCTGCCCCAATTGTTTCCTTGTTCCTAGTAGAAGTAGAAGC 180
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 TGGAAGCTGGTCTCTTTGGGTTTTGGAAGGCTTCATCTTTCCATTTTAGGTCCTGCAAGT 240
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 GTGCTCAACAACTCAAGCTTCACTGTCTTCTTGGTTTCTACCTCTGGTTTTGATTATTAT 300
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 CACTAGTTTCTGCAATTCTTGGAGATTTCCGAGGCGGCCATGAGCGGCAATCCATCGTTC 360
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 TCGCAGCTCGGTGCGGTGGACGCCGCCATGAACGGCGGCTACTTCATGGCGGCGAGCGGC 420
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 AATGGCGCCGACGTGCCGCTGTTCCATCCGGCCATGGCGCCGCCGCATGATCACGGCGGG 480
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 AGCTTCGGCTACGGCGACGCGGCGGCGGCGGCGATGGACGTCGGCGCGCACTTCGCGGCG 540
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 GCGAACAACCTCGTGCTCGCGTCCCTGGCGACCCAGCTGTTCGGCGCCGCGCCGGCGGCG 600
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 GCGGCGCACGGGCATGGCGACTACCTCGGCGCGACGACGCCGCCGGAGGAGGAGATGGGG 660
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 GGCGGGTACGACGTCGCCGTCGGCGACAGCTCCGGCGGCGCGGTGAGCCTCGCGTGCCTC 720
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 GGCCACGGCCAGCCGGGCGACATGGCGGCGGGGTGGTGCTCGACGTCGGCGAGGAAGCCG 780
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 AGCTGCAACTGGAGCAGCAGCAACGCCGGTGTGCACGGTGGTTCGTATTACCTCGCCGGG 840
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 GTGCCGGAGGCTGCCGGCTTCGTGTCCGCGGCGGCGGCGAGCGAGCTGTCGCTGAGCCTG 900
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 TGCTCCAAGTCGTCCTCGGACAGCATGCTCAACGCCGGCGGCGACCAGTGCTCGTCGGCG 960
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 GCGAGCCGTTCCGGGCTGACGCAGATGAGCAGGGTGGTGGTGGTGGAGCCCGAGCCGCCG 1020
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 CTCGTACCGTACTACCCGGCGGCGAACTTCGCCGTGGTGGTGGCGCGGTCCCGATACGCC 1080
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 GCGGTGGCGCAGCAGGTGCTCAACGACGCCGTCGGCTGCGTGCTGGGCGGCGTCGCGGAC 1140
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 GCCGCCGCCGACTCGGCCAGCGGCGTCGACAGCGGCAGCTCGAGGCCGTCGAGCTGCTCG 1200
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 GTGGCCGGCGGCGCGCCGTCGTCCGCCGTGAGCTCCAACAACCAGCTCATCGCCTCCTCC 1260
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 GGCGAGCACACGCACGGCGGCGGCGACGCTTCGGCTCAGCGGCTCAGGAGCGAGCTCCTC 1320
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 ACCATGCTCCAGCTGATGGATCAGAAGTACAACCAATGCCTCGACGAGATCCAGAGCACG 1380
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 ACGGCGAGGTTCAACACCCTGACGCACGCCACGGCGCGCGCCGCCGGGATGAGCAGCAGC 1440
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 AGCATCTGCGCGCCGTTCGCGCACCGCGCCGTGTCGGCAATGTACCACGGCCTGAGGCGC 1500
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 CGCATTGCCGGCGAGATCATGTCCGCCGCCGCCGCGGCCGGCAGGCCTTGCCGCGGCGGC 1560
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 GAGTCGTCGTCGGCGGTGACCGGCGGCGAGAGGGAGCGGAGCTGGGAGTCGGCGTTCATC 1620
consensus_1862#1 ------------------------------------------------------------
consensus_1862#0 CAGAAGCACTGGGCGGTGCAGCAGCTGCGGCGCGGCGAGCAGCAGTGCTGGCGGCCGCAG 1680
consensus_1862#1 --------------------------------CTGCGGATTAAAGNTCAATC-----CAA 23
* *** ** * * **
consensus_1862#0 CGCGGCCTCCCGGAGAAGTCCGTCGCCGTCCTCAAGGCC-TGGATGTTCGAGAACTTCCT 1739
consensus_1862#1 TGCCATTGATCTATTTAATCGATCACCAATTGTAACTCAGTTTAAATNCGATGGTTACA- 82
** * * ** ** ** ** * * * * *** * *
consensus_1862#0 CCGCCCGTATCCGAAAGACAGCGAGAAGGAGATGCTCGCAGCAAGGAGCGGCCTCAGCAG 1799
consensus_1862#1 ----GTATATATAAAAAGCTGCCGG--TGCNGTGATCGCATTTCGCGGTNGA-TCATGAG 135
*** *** * ** * * ** ***** * * * *** **
consensus_1862#0 GAACCAGGTGTCGAATTGGTTCATAAACGCTCGAGTTCGGCTATGGAAGCCAATGATCGA 1859
consensus_1862#1 CACCTCATTGGGAGATCGATGCG-AATTGCTGAGTTTTCAGTTGAGTAGGCTGCNGTAAA 194
* * ** ** * * * ** *** ** * * ** * * *
consensus_1862#0 GGAGATGTGCGAGGAGCTGAAGAGGAGCTCGGGTGGTGGTGCTGGAAATCAAGCTCTAGC 1919
consensus_1862#1 AAAATCAGTTAAAAAATTTGGGATTGATT--GTTGTTAGTACT--ACCTCAGTTCCAAAT 250
* * * * ** * * ** * ** ** * *** * *
consensus_1862#0 AATGGAGCATATGAACAGCCAAGATGTGGTCAGTTAACCAGTTAGAGCTTTGGCTTGGTT 1979
consensus_1862#1 TATAAGG-ATATTTA-GGCTATTTAGTAAATAGTTCTGAGGTTGGCAATTTTTTTTT-TT 307
** * **** * ** * ** **** *** * *** ** **
consensus_1862#0 TGATGGCGATGTTAGCTGCGGATTAAGATCAATCAATGCCATTGATCTATTTATCGATCA 2039
consensus_1862#1 GAATTGCGTACGTCTTAGGGGCTCAAGATCCGCTCATATTTTCACATTGTTGATGTCCTA 367
** *** * * ** * ****** ** * * ** ** *
consensus_1862#0 CCAATTGTAACTCAGTTTAATTCGATGGTTTCAGTATATATAAAAGCTGCCGGTGCAGTG 2099
consensus_1862#1 AGATCCGCTCATATTTTCACATTGTGCATTTGATTGGCTATGGAA----TCATTGAAATG 423
* * * ** * * * *** * * *** ** * ** * **
consensus_1862#0 ATCGCATTTCGCGGTAGATCATGAGCA 2126
consensus_1862#1 ATGGGATTCATTGGAAAAAAAAAA--- 447
** * *** ** * * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||