These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [CCCNCAAGGANACTTTNCTNTTCATACATTTACAAGGTCCTCAAGCAGGCCCCCCCGACACTGGTTTCTCCAACCGGCCATGTCCATCCTGAACTCTTTCGTCAACGACATNTTNGAGCGTGTTGCTACCNAAGCTTCCAAGCTTGCCGCCTACAACAANAAGTCAACCATCTCATCTNGTGAGATCCANACCTCGGTCAGGCTTATTTTGCCCGGTGAGCTTGCCAANCACCCCGTGTTTNAGGGTACCAAGGCTGTTACCAAGTACTCTTCAAGCCCCAAATAAATCAAGCGCTTGTCTTTTGGTTTTCTGTTTAGCTCTTTTTCCTTCATCCTTTTGGGCATGGGTATTTTTCTTTTTACATGGGAGTCATAATGGGTTGGTAAACGGGTTGGCCCCCCTCGTTTGCCTCCTAATGCTTTTACGGTACTGGTTGCGTCTGTTTTTATTGGGGATCACTTTTTCAGGTCACGGGGTTTCGCGGCTGTACAATACCTTGAGACTTGGGGATTAGGGAGAATAAATCCTGAACACATGGCGTCTATTCCTAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AT003344 [CCCNCAAGGANACTTTNCTNTTCATACATTTACAAGGTCCTCAAGCAGGCCCCCCCGACACTGGTTTCTCCAACCGGCCATGTCCATCCTGAACTCTTTCGTCAACGACATNTTNGAGCGTGTTGCTACCNAAGCTTCCAAGCTTGCCGCCTACAACAANAAGTCAACCATCTCATCTNGTGAGATCCANACCTCGGTCAGGCTTATTTTGCCCGGTGAGCTTGCCAANCACCCCGTGTTTNAGGGTACCAAGGCTGTTACCAAGTACTCTTCAAGCCCCAAATAAATCAAGCGCTTGTCTTTTGGTTTTCTGTTTAGCTCTTTTTCCTTCATCCTTTTGGGCATGGGTATTTTTCTTTTTACATGGGAGTCATAATGGGTTGGTAAACGGGTTGGCCCCCCTCGTTTGCCTCCTAATGCTTTTACGGTACTGGTTGCGTCTGTTTTTATTGGGGATCACTTTTTCAGGTCACGGGGTTTCGCGGCTGTACAATACCTTGAGACTTGGGGATTAGGGAGAATAAATCCTGAACACATGGCGTCTATTCCTAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_1868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence [AAAGCTTTCCCAAAAGCTTNCCCGCCTTACCAACCAAANAAGTCAAACCCNTCCNCATCTCGTGAGATCCCAANACCTCGGGTCAGGCTTATCTTGCCCGGTGAGCTTGCCAAGCACGCCGGTGTNTGAGGGTACCAAGGCTGTTACCAAGTACTNTTCAAGCNCCAAATAAATCAAGCGCTTGTCTTTTGGTTTTCTGTTTAGCTCTTTTTCCTTCATCCTTTTGGGCATGGGTATTTTTCTTTTGACATGGGAGTCATGATGGGTTGGTAANCGGGTTGGCCCNCCTCGTTTGCCTCCTAATGCTTTTNCGGTACTGGTTGCGTCTGTTTTTATTGGGGATCNCTTTTTCAGGTCACGGGGTTTNNCGGCTGTACAATACCTTGAGACTTGGGGATTAGGGAGAATAAATCCTGAACACATGGCATCTAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AT003535 [AAAGCTTTCCCAAAAGCTTNCCCGCCTTACCAACCAAANAAGTCAAACCCNTCCNCATCTCGTGAGATCCCAANACCTCGGGTCAGGCTTATCTTGCCCGGTGAGCTTGCCAAGCACGCCGGTGTNTGAGGGTACCAAGGCTGTTACCAAGTACTNTTCAAGCNCCAAATAAATCAAGCGCTTGTCTTTTGGTTTTCTGTTTAGCTCTTTTTCCTTCATCCTTTTGGGCATGGGTATTTTTCTTTTGACATGGGAGTCATGATGGGTTGGTAANCGGGTTGGCCCNCCTCGTTTGCCTCCTAATGCTTTTNCGGTACTGGTTGCGTCTGTTTTTATTGGGGATCNCTTTTTCAGGTCACGGGGTTTNNCGGCTGTACAATACCTTGAGACTTGGGGATTAGGGAGAATAAATCCTGAACACATGGCATCTAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1868#0 CCCNCAAGGANACTTTNCTNTTCATACATTTACAAGGTCCTCAAGCAGGCCCCCCCGACA 60 consensus_1868#1 ------------------------------------------------------------ consensus_1868#0 CTGGTTTCTCCAACCGGCCATGTCCATCCTGAACTCTTTCGTCAACGACATNTTNGAGCG 120 consensus_1868#1 --------------------------------------------------------AAAG 4 * * consensus_1868#0 TGTTGCTACCNAAGCTTCCAAGCTTGCCGCCTACAACAANAAGTCAA---CCATCTCATC 177 consensus_1868#1 CTTTCCCA--AAAGCTTNCCCGCCT--TACCAACCA-AANAAGTCAAACCCNTCCNCATC 59 ** * * ****** * ** * ** ** * ********** * * **** consensus_1868#0 TNGTGAGATCC--ANACCTCGG-TCAGGCTTATTTTGCCCGGTGAGCTTGCCAANCACCC 234 consensus_1868#1 TCGTGAGATCCCAANACCTCGGGTCAGGCTTATCTTGCCCGGTGAGCTTGCCAAGCACGC 119 * ********* ********* ********** ******************** *** * consensus_1868#0 CG-TGTTTNAGGGTACCAAGGCTGTTACCAAGTACTCTTCAAGCCCCAAATAAATCAAGC 293 consensus_1868#1 CGGTGTNTGAGGGTACCAAGGCTGTTACCAAGTACTNTTCAAGCNCCAAATAAATCAAGC 179 ** *** * *************************** ******* *************** consensus_1868#0 GCTTGTCTTTTGGTTTTCTGTTTAGCTCTTTTTCCTTCATCCTTTTGGGCATGGGTATTT 353 consensus_1868#1 GCTTGTCTTTTGGTTTTCTGTTTAGCTCTTTTTCCTTCATCCTTTTGGGCATGGGTATTT 239 ************************************************************ consensus_1868#0 TTCTTTTTACATGGGAGTCATAATGGGTTGGTAAACGGGTTGGCCCCCCTCGTTTGCCTC 413 consensus_1868#1 TTCTTTTGACATGGGAGTCATGATGGGTTGGTAANCGGGTTGGCCCNCCTCGTTTGCCTC 299 ******* ************* ************ *********** ************* consensus_1868#0 CTAATGCTTTTACGGTACTGGTTGCGTCTGTTTTTATTGGGGATCACTTTTTCAGGTCAC 473 consensus_1868#1 CTAATGCTTTTNCGGTACTGGTTGCGTCTGTTTTTATTGGGGATCNCTTTTTCAGGTCAC 359 *********** ********************************* ************** consensus_1868#0 GGGGTTTCGCGGCTGTACAATACCTTGAGACTTGGGGATTAGGGAGAATAAATCCTGAAC 533 consensus_1868#1 GGGGTTTNNCGGCTGTACAATACCTTGAGACTTGGGGATTAGGGAGAATAAATCCTGAAC 419 ******* *************************************************** consensus_1868#0 ACATGGCGTCTATTCCTAAAAAAAAAAAAAAAAAAAAAAAAAA- 576 consensus_1868#1 ACATGGCATCTAATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 463 ******* **** ** ************************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||