These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1869#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1261 fasta sequence [ACGCTGTTTAGGTTGGTTAGCCTCCAAGCCGCCTCCGAGCAGCAGCAGCAGCAGCAGCAGTCGGCGTCCTACAACTCGAGGAGCACGACGTCGAGCGGGTCCAGGTCGTCGTCGCACCAGACGAACGCGTCCTACAGCTACTACCACCACAGCAGCAACAGCGGCGGCGGCGGCGGAGGCGGCGGAGGGTACTACTACGGCGGCCAGCAGCCGCCGCCGTCGCAGTACTACTACCTGGAGCCGTACCAAGAAGAATGCGGCAACGCCCCACACCACCAGCTTTACATGGATGAAGACTTCTCCTCCTCGTCGTCGTCGAGGCACTTCCACCACGGCGCGCGGGTGCAGCAGCAGCAGCCGCCGGCGTCGTCCACGCCCACGGGGACGGCGCCGACGCCGCCGCTGTCGACCTCGTCCACCGCGGCGGGCGCCGGGCACGGCCTGTTCGAGGCGGCGGACCTGTCGTTCCCGCCGGACCTCAACCTCGACTTCTCGTCCCCGGCGTCGTCGTCCGGCGGCGGGACAGCGTCGTCGGGCGCGGTTGGGGGCGGTGGCGGCGGGAGGTGGGCTAGCCAGCTGCTGCTGGAGTGCGCGCGGTCGGTGGCCGCCCGCGACAGCCAGCGCGTGCAGCAGCTCATGTGGATGCTCAACGAGCTCGCGTCGCCGTACGGCGACGTGGAGCAGAAGCTGGCTTCCTACTTCTTGCAGGGGCTGTTCGCTCGGCTCACGGCGTCCGGGCCGCGCACGCTGCGCACGCTCGCCGCGGCGTCCGACCGGAACACGTCGTTCGACTCGACGCGGCGCACGGCGCTGCGGTTCCAGGAGCTCAGCCCCTGGTCCTCGTTTGGGCACGTCGCCGCCAATGGCGCCATCCTCGAGTCCTTCCTGGAGGTCGCCGCCGCGGCGTCGTCGGAGACGCAGCGGTTCCACATCCTCGACCTGAGCAACACGTTCTGCACGCAGTGGCCGACGCTGCTGGAGGCGCTGGCCACGCGGTCCGCCGACGAGACGCCGCACCTCTCGATCACCACCGTGGTGTCCGCCGCGCCGTCCGCGCCCACGGCGGCGGTGCAGCGCGTCATGCGGGAGATCGGGCAGCGCATGGAGAAGTTCGCGCGGCTCATGGGCGTGCCCTTCCGCTTCCGCGCCGTGCACCACTCCGGGGACCTCGCGGAGCTCGACCTCGACGCGCTCGACCTCCGCGAGGGCGGCGCCACCACCGCGCTCGCCGTCAACTGCGTCAACTCGCTGCGCGGCGTGG] [+] EMBL AK120959 [ACGCTGTTTAGGTTGGTTAGCCTCCAAGCCGCCTCCGAGCAGCAGCAGCAGCAGCAGCAGTCGGCGTCCTACAACTCGAGGAGCACGACGTCGAGCGGGTCCAGGTCGTCGTCGCACCAGACGAACGCGTCCTACAGCTACTACCACCACAGCAGCAACAGCGGCGGCGGCGGCGGAGGCGGCGGAGGGTACTACTACGGCGGCCAGCAGCCGCCGCCGTCGCAGTACTACTACCTGGAGCCGTACCAAGAAGAATGCGGCAACGCCCCACACCACCAGCTTTACATGGATGAAGACTTCTCCTCCTCGTCGTCGTCGAGGCACTTCCACCACGGCGCGCGGGTGCAGCAGCAGCAGCCGCCGGCGTCGTCCACGCCCACGGGGACGGCGCCGACGCCGCCGCTGTCGACCTCGTCCACCGCGGCGGGCGCCGGGCACGGCCTGTTCGAGGCGGCGGACCTGTCGTTCCCGCCGGACCTCAACCTCGACTTCTCGTCCCCGGCGTCGTCGTCCGGCGGCGGGACAGCGTCGTCGGGCGCGGTTGGGGGCGGTGGCGGCGGGAGGTGGGCTAGCCAGCTGCTGCTGGAGTGCGCGCGGTCGGTGGCCGCCCGCGACAGCCAGCGCGTGCAGCAGCTCATGTGGATGCTCAACGAGCTCGCGTCGCCGTACGGCGACGTGGAGCAGAAGCTGGCTTCCTACTTCTTGCAGGGGCTGTTCGCTCGGCTCACGGCGTCCGGGCCGCGCACGCTGCGCACGCTCGCCGCGGCGTCCGACCGGAACACGTCGTTCGACTCGACGCGGCGCACGGCGCTGCGGTTCCAGGAGCTCAGCCCCTGGTCCTCGTTTGGGCACGTCGCCGCCAATGGCGCCATCCTCGAGTCCTTCCTGGAGGTCGCCGCCGCGGCGTCGTCGGAGACGCAGCGGTTCCACATCCTCGACCTGAGCAACACGTTCTGCACGCAGTGGCCGACGCTGCTGGAGGCGCTGGCCACGCGGTCCGCCGACGAGACGCCGCACCTCTCGATCACCACCGTGGTGTCCGCCGCGCCGTCCGCGCCCACGGCGGCGGTGCAGCGCGTCATGCGGGAGATCGGGCAGCGCATGGAGAAGTTCGCGCGGCTCATGGGCGTGCCCTTCCGCTTCCGCGCCGTGCACCACTCCGGGGACCTCGCGGAGCTCGACCTCGACGCGCTCGACCTCCGCGAGGGCGGCGCCACCACCGCGCTCGCCGTCAACTGCGTCAACTCGCTGCGCGGCGTGG] consensusID : consensus_1869#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [TCTCCCTCTCCACCCTCCTCTCCTTCTCTCATCGATCCGGCCAAAAGCTACTCAAATGTTATCGATCTCACCAAAAGAGAAGCAAAGAGAAAGAGAGCATCAAAAGCACAAACACCAAGCCACTCACCACACCTCGCAATTTACATGGCTCCTACTAGGTTGTGTAGCTGCTACTAGCTAGCTCAGCTCGGCTCGGCTCGGCTCGCCATTAAAATCCCCTTGTTACCGCGCGTTGTTTGGTTGTACCGCGCCATATGTTGCCGGCTCCCTCTCGTCGNCGTTGCTTAATGGATACGCTGGTTAAGGTGGTTAGGCTCCAAGNCGGCTCCGAACAGCAGCAGCAGCAGCAGCAGTCGGCGTCCTAACACTCGAGGAGCACGACGTCGAGCGGGTCCAGGTCGTCGTCGCACCAGACGAAACGCGTCTACAGCTACTACCACCCACAGCAGCACAGCGGCGGGCGCCGCCGAAGCGGCGGAAGGTACTTACTACGCGGCCAGCAGCCGCCGCCGTCGCAGTACTACTACCTGNAGCCGTACCAAGAAAATGCGCNNACGCCCACACCACCAGCTTTACATGGATGAAA] [+] EMBL CA756350 [TCTCCCTCTCCACCCTCCTCTCCTTCTCTCATCGATCCGGCCAAAAGCTACTCAAATGTTATCGATCTCACCAAAAGAGAAGCAAAGAGAAAGAGAGCATCAAAAGCACAAACACCAAGCCACTCACCACACCTCGCAATTTACATGGCTCCTACTAGGTTGTGTAGCTGCTACTAGCTAGCTCAGCTCGGCTCGGCTCGGCTCGCCATTAAAATCCCCTTGTTACCGCGCGTTGTTTGGTTGTACCGCGCCATATGTTGCCGGCTCCCTCTCGTCGNCGTTGCTTAATGGATACGCTGGTTAAGGTGGTTAGGCTCCAAGNCGGCTCCGAACAGCAGCAGCAGCAGCAGCAGTCGGCGTCCTAACACTCGAGGAGCACGACGTCGAGCGGGTCCAGGTCGTCGTCGCACCAGACGAAACGCGTCTACAGCTACTACCACCCACAGCAGCACAGCGGCGGGCGCCGCCGAAGCGGCGGAAGGTACTTACTACGCGGCCAGCAGCCGCCGCCGTCGCAGTACTACTACCTGNAGCCGTACCAAGAAAATGCGCNNACGCCCACACCACCAGCTTTACATGGATGAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1869#0 ACGCTGTTTAGGTTGGTTAGCCTCCAAGCCGCCTCCGAGCAGCAGCAGCAGCAGCAGCAG 60 consensus_1869#1 ------------------------------------------------------------ consensus_1869#0 TCGGCGTCCTACAACTCGAGGAGCACGACGTCGAGCGGGTCCAGGTCGTCGTCGCACCAG 120 consensus_1869#1 ------------------------------------------------------------ consensus_1869#0 ACGAACGCGTCCTACAGCTACTACCACCACAGCAGCAACAGCGGCGGCGGCGGCGGAGGC 180 consensus_1869#1 ------------------------------------------------------------ consensus_1869#0 GGCGGAGGGTACTACTACGGCGGCCAGCAGCCGCCGCCGTCGCAGTACTACTACCTGGAG 240 consensus_1869#1 ------------------------------------------------------------ consensus_1869#0 CCGTACCAAGAAGAATGCGGCAACGCCCCACACCACCAGCTTTACATGGATGAAGACTTC 300 consensus_1869#1 ------------------------------------------------------------ consensus_1869#0 TCCTCCTCGTCGTCGTCGAGGCACTTCCACCACGGCGCGCGGGTGCAGCAGCAGCAGCCG 360 consensus_1869#1 ------------------------------------------------------------ consensus_1869#0 CCGGCGTCGTCCACGCCCACGGGGACGGCGCCGACGCCGCCGCTGTCGACCTCGTCCACC 420 consensus_1869#1 ------------------------------------------------------------ consensus_1869#0 GCGGCGGGCGCCGGGCACGGCCTGTTCGAGGCGGCGGACCTGTCGTTCCCGCCGGACCTC 480 consensus_1869#1 ----------------------------------------------TCTCCCT---CTCC 11 ** * * * * consensus_1869#0 AACCTCGACTTCTCGTCCCCGGCGTCGTCGTCCGGCGGCGGGACAG-CGTCGTCGGGCGC 539 consensus_1869#1 ACCCTCCTCTCCTTCTCTCATCGATC--CGGCCAAAAGCTACTCAAATGTTATCGATCTC 69 * **** ** ** ** * ** ** ** ** ** ** *** * * consensus_1869#0 GGTTGGGGGCGGTGGCGGCGGGAGGTGGGCTAGCCAGCTGCTGCTGGAGTGCGCGCGGTC 599 consensus_1869#1 ACCAAAAGA--GAAGCAAAGAGAAAGAGAGCA-TCAAAAGC--ACAAACACCAAGCCACT 124 * * ** * ** * * ** ** * * ** consensus_1869#0 GGTGGCCGCCCGCGACAGCCAGCGCGTGCAGCAGCTCATGTGGATGCT--CAACGAGCTC 657 consensus_1869#1 CACCACACCTCGCAATTTACATGGCTCCTACTAGGTTGTGTAGCTGCTACTAGCTAGCTC 184 * * *** * ** ** * ** * *** * **** * * ***** consensus_1869#0 GCGTCGCCGTACGGCGACGTGGAGCAGAAGCTGGCTTCCTACTTCTTGCAGGGGCTGTTC 717 consensus_1869#1 AGCTCGGCTCGGCTCGGCTCGCCATTAAAATCCCCTTGTTACCGC------GCGTTGTTT 238 *** * ** * * ** *** *** * * * **** consensus_1869#0 GCTCGGCTCACGGCGTCCG--GGCCGCGCACGCTGCGCACGCTCGCCGCGGCGTCCGACC 775 consensus_1869#1 GGTTGTACCGCGCCATATGTTGCCGGCTCCCTCTCGTCGNCGTTGCTTAATGGATACGCT 298 * * * * ** * * * * * ** * * ** * * ** * * consensus_1869#0 GGAACACGTCGTTCGACTCGACGCGGCGCACGGCGCTGCGGTTCCAGGAGCTCAGCCCCT 835 consensus_1869#1 GGTTAAGGTGGTTAGGCTCCAAGNCG-GCTCCGAACAGCAGCAGCAGCAGC--AGC---- 351 ** * ** *** * *** * * * ** * * * ** * *** *** *** consensus_1869#0 GGTCCTCGTTTGGGCACGTCGCCGCCAATGGCGCCATCCTCGAGTCCTTCCTGGAGGTCG 895 consensus_1869#1 AGTCGGCGTCCTAACAC-TCGAGGAGCACGACG------TCGAGCGGGTCC---AGGTCG 401 *** *** *** *** * * * ** ***** *** ****** consensus_1869#0 CCGCCGCGGCGTCGTCGGAGACGCAGCGGTTCCACATCCTCGACCTGAGCAACACGTTCT 955 consensus_1869#1 TCGTCGC---ACCAGACGAAACGCGTCTACAGC-TACTACCACCCACAGCAGCACAG-CG 456 ** *** * ** **** * * * * ** **** *** * consensus_1869#0 GCACGCAGTGGCCGACGCTGCTGGAGGCGCTGGCCACGCGGTCCGCCGACGAGACGCCGC 1015 consensus_1869#1 GCGGGC-GCCGCCGAAGCGGCGGAAGGTACTTACTACGCGGCCAGCAGCCGC--CGCCG- 512 ** ** * ***** ** ** * *** ** * ****** * ** * ** ***** consensus_1869#0 ACCTCTCGATCACCACCGTGGTGTCCGCCGCGCCGTCCGCGCCCACGGCGGCGGTGC-AG 1074 consensus_1869#1 -TCGCAGTACTACTACC-TGNAGCCGTACCAAGAAAATGCGCNNACGCCCACACCACCAG 570 * * * ** *** ** * * * **** *** * * * ** consensus_1869#0 CGCGTCATGCGGGAGATCGGGCAGCGCATGGAGAAGTTCGCGCGGCTCATGGGCGTGCCC 1134 consensus_1869#1 CTTTACATGGATGAAA-------------------------------------------- 586 * **** ** * consensus_1869#0 TTCCGCTTCCGCGCCGTGCACCACTCCGGGGACCTCGCGGAGCTCGACCTCGACGCGCTC 1194 consensus_1869#1 ------------------------------------------------------------ consensus_1869#0 GACCTCCGCGAGGGCGGCGCCACCACCGCGCTCGCCGTCAACTGCGTCAACTCGCTGCGC 1254 consensus_1869#1 ------------------------------------------------------------ consensus_1869#0 GGCGTGG 1261 consensus_1869#1 ------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||