These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1053 fasta sequence [AACTTACCAAGAGATTTTTTTTTTCATACAGTATTTTCTCTTCGAATCAGTCTGATTCTCTATTCGTACTCTCTCAATAAATAATTCAATTATGTTTGAAGCTCGTCTTTTACACGGTTCAATTTTCGCAAAAGTTATCGAAGGTCTTCGAGAGTTGGTCAATGAAGCAACATGGGAATGCAGTGGCAATGGAATTACATTACAAGCTATGGATAGTTCCCACGTGGCATTAGTTTCTCTTGTCATGCGCTCGGAAGGTTTCGAATCATATCGATGTGATCGAAATATGAGTCTCGGTATTAGTCTTGTCAGTATGTCAAAAGTATTGAAAACAATGGGCAAAGATGATTCATTGACAATCCGTGTCAACGATGATTCGGATTCGATTATTATCGCAATGGAATCACAAAATCAAGATAAATTCGCTGATTATGAATTGCGTTTAATGGATCTCGACAGCGAACATTTGGGTATCCCCGATACAGATTATTCATGTACAATTAAAATGCCAAGCAGCGAATTTTCACGCATTTGTCGTGATATGAGTATCATGGGTGATTCCGTTCTTGTTTGTACAACAAAAGAAGGTGTTAAGTTCTCCGCCAAAGGCGATCTTGGACAAGGTAGCATTCGTCTTGTTCAAACAACAAACATCGAAAAAGAAGAAGAAGCAGTTATTATCGAAATGAAAGAAGCTGTCGCACTTACATTTGCTGTTCGATATTTGAGCATGTTTTGCAAAGCGGCACCACTCTCACCACAAGTCGGATTGAGCTTATCCGAAGATACACCATTAATGTGCGAATTCAAAATTGCTGAGATGGGTCATGTTCGTTTCTACTTGGCACCGAAAATTGAAGATGCTGAAAACTAAAACAGGATATTCATTACCAATAGACTTGTCAGATGGATACTATTTTTCTTTGTCTCTATTTTTTTGTTGTTACTATGTAATTGTAAAAAAGAAAGAACGTGTCTTTTGGATGTAGTAGAATATTTTTCTTATGGAATTCCTCCACTTAACGGATATAACGGTTGTCTTGATTCTCTTTC] [+] EMBL AK063098 [AACTTACCAAGAGATTTTTTTTTTCATACAGTATTTTCTCTTCGAATCAGTCTGATTCTCTATTCGTACTCTCTCAATAAATAATTCAATTATGTTTGAAGCTCGTCTTTTACACGGTTCAATTTTCGCAAAAGTTATCGAAGGTCTTCGAGAGTTGGTCAATGAAGCAACATGGGAATGCAGTGGCAATGGAATTACATTACAAGCTATGGATAGTTCCCACGTGGCATTAGTTTCTCTTGTCATGCGCTCGGAAGGTTTCGAATCATATCGATGTGATCGAAATATGAGTCTCGGTATTAGTCTTGTCAGTATGTCAAAAGTATTGAAAACAATGGGCAAAGATGATTCATTGACAATCCGTGTCAACGATGATTCGGATTCGATTATTATCGCAATGGAATCACAAAATCAAGATAAATTCGCTGATTATGAATTGCGTTTAATGGATCTCGACAGCGAACATTTGGGTATCCCCGATACAGATTATTCATGTACAATTAAAATGCCAAGCAGCGAATTTTCACGCATTTGTCGTGATATGAGTATCATGGGTGATTCCGTTCTTGTTTGTACAACAAAAGAAGGTGTTAAGTTCTCCGCCAAAGGCGATCTTGGACAAGGTAGCATTCGTCTTGTTCAAACAACAAACATCGAAAAAGAAGAAGAAGCAGTTATTATCGAAATGAAAGAAGCTGTCGCACTTACATTTGCTGTTCGATATTTGAGCATGTTTTGCAAAGCGGCACCACTCTCACCACAAGTCGGATTGAGCTTATCCGAAGATACACCATTAATGTGCGAATTCAAAATTGCTGAGATGGGTCATGTTCGTTTCTACTTGGCACCGAAAATTGAAGATGCTGAAAACTAAAACAGGATATTCATTACCAATAGACTTGTCAGATGGATACTATTTTTCTTTGTCTCTATTTTTTTGTTGTTACTATGTAATTGTAAAAAAGAAAGAACGTGTCTTTTGGATGTAGTAGAATATTTTTCTTATGGAATTCCTCCACTTAACGGATATAACGGTTGTCTTGATTCTCTTTC] consensusID : consensus_1880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 603 fasta sequence [ATAGTTCACACGTCGCCCTAGTTTCACTTGTCATGCGAAGCGAAGGTTTCGAATCGTATCGATGCGATCGAAATATGAGTCTTGGTATTAGTCTCGTCAGTATGTCAAAAGTTCTTAAAACTATGGGCAAAGATGATTCATTAACCATTCGAGTTAATGACGATTCTGATTCGATTATCATTGCAATGGAATCACAAAATCAAGATAAATTCGCTGATTATGAATTACGTTTAATGGACTTAGATAGCGAACACTTAGGCATTCCCGATACAGACTATTCATGCACAATTAAAATGCCAAGTAGTGAATTCTCCCGAATCTGTCGTGATATGAGCATCATGGGCGATTCCGTACTTGTTTGTACGACGAAAGAAGGTGTTAAATTCTCGGCCAAAGGCGATCTTGGTCAAGGCAGTATTCGTCTTGTTCAAACAGCANATATCGAANAAGAAGAAGAAGCTGTTATTATCGAAATGAAAGAAGCCGTTGCATTGACATTCGCAGTTCGATATTTAAGTATGTTCTGNCAAGCTGCACCACTTTCNACCACAGTTGGTTTAAGTTTATCCGAAGATACACCATTAATGTGCGAAATTTANATTT] [+] EMBL CA756267 [ATAGTTCACACGTCGCCCTAGTTTCACTTGTCATGCGAAGCGAAGGTTTCGAATCGTATCGATGCGATCGAAATATGAGTCTTGGTATTAGTCTCGTCAGTATGTCAAAAGTTCTTAAAACTATGGGCAAAGATGATTCATTAACCATTCGAGTTAATGACGATTCTGATTCGATTATCATTGCAATGGAATCACAAAATCAAGATAAATTCGCTGATTATGAATTACGTTTAATGGACTTAGATAGCGAACACTTAGGCATTCCCGATACAGACTATTCATGCACAATTAAAATGCCAAGTAGTGAATTCTCCCGAATCTGTCGTGATATGAGCATCATGGGCGATTCCGTACTTGTTTGTACGACGAAAGAAGGTGTTAAATTCTCGGCCAAAGGCGATCTTGGTCAAGGCAGTATTCGTCTTGTTCAAACAGCANATATCGAANAAGAAGAAGAAGCTGTTATTATCGAAATGAAAGAAGCCGTTGCATTGACATTCGCAGTTCGATATTTAAGTATGTTCTGNCAAGCTGCACCACTTTCNACCACAGTTGGTTTAAGTTTATCCGAAGATACACCATTAATGTGCGAAATTTANATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1880#0 AACTTACCAAGAGATTTTTTTTTTCATACAGTATTTTCTCTTCGAATCAGTCTGATTCTC 60 consensus_1880#1 ------------------------------------------------------------ consensus_1880#0 TATTCGTACTCTCTCAATAAATAATTCAATTATGTTTGAAGCTCGTCTTTTACACGGTTC 120 consensus_1880#1 ------------------------------------------------------------ consensus_1880#0 AATTTTCGCAAAAGTTATCGAAGGTCTTCGAGAGTTGGTCAATGAAGCAACATGGGAATG 180 consensus_1880#1 ------------------------------------------------------------ consensus_1880#0 CAGTGGCAATGGAATTACATTACAAGCTATGGATAGTTCCCACGTGGCATTAGTTTCTCT 240 consensus_1880#1 --------------------------------ATAGTTCACACGTCGCCCTAGTTTCACT 28 ******* ***** ** ******* ** consensus_1880#0 TGTCATGCGCTCGGAAGGTTTCGAATCATATCGATGTGATCGAAATATGAGTCTCGGTAT 300 consensus_1880#1 TGTCATGCGAAGCGAAGGTTTCGAATCGTATCGATGCGATCGAAATATGAGTCTTGGTAT 88 ********* ************** ******** ***************** ***** consensus_1880#0 TAGTCTTGTCAGTATGTCAAAAGTATTGAAAACAATGGGCAAAGATGATTCATTGACAAT 360 consensus_1880#1 TAGTCTCGTCAGTATGTCAAAAGTTCTTAAAACTATGGGCAAAGATGATTCATTAACCAT 148 ****** ***************** * ***** ******************** ** ** consensus_1880#0 CCGTGTCAACGATGATTCGGATTCGATTATTATCGCAATGGAATCACAAAATCAAGATAA 420 consensus_1880#1 TCGAGTTAATGACGATTCTGATTCGATTATCATTGCAATGGAATCACAAAATCAAGATAA 208 ** ** ** ** ***** *********** ** ************************** consensus_1880#0 ATTCGCTGATTATGAATTGCGTTTAATGGATCTCGACAGCGAACATTTGGGTATCCCCGA 480 consensus_1880#1 ATTCGCTGATTATGAATTACGTTTAATGGACTTAGATAGCGAACACTTAGGCATTCCCGA 268 ****************** *********** * ** ******** ** ** ** ***** consensus_1880#0 TACAGATTATTCATGTACAATTAAAATGCCAAGCAGCGAATTTTCACGCATTTGTCGTGA 540 consensus_1880#1 TACAGACTATTCATGCACAATTAAAATGCCAAGTAGTGAATTCTCCCGAATCTGTCGTGA 328 ****** ******** ***************** ** ***** ** ** ** ******** consensus_1880#0 TATGAGTATCATGGGTGATTCCGTTCTTGTTTGTACAACAAAAGAAGGTGTTAAGTTCTC 600 consensus_1880#1 TATGAGCATCATGGGCGATTCCGTACTTGTTTGTACGACGAAAGAAGGTGTTAAATTCTC 388 ****** ******** ******** *********** ** ************** ***** consensus_1880#0 CGCCAAAGGCGATCTTGGACAAGGTAGCATTCGTCTTGTTCAAACAACAAACATCGAAAA 660 consensus_1880#1 GGCCAAAGGCGATCTTGGTCAAGGCAGTATTCGTCTTGTTCAAACAGCANATATCGAANA 448 ***************** ***** ** ****************** ** * ****** * consensus_1880#0 AGAAGAAGAAGCAGTTATTATCGAAATGAAAGAAGCTGTCGCACTTACATTTGCTGTTCG 720 consensus_1880#1 AGAAGAAGAAGCTGTTATTATCGAAATGAAAGAAGCCGTTGCATTGACATTCGCAGTTCG 508 ************ *********************** ** *** * ***** ** ***** consensus_1880#0 ATATTTGAGCATGTTTTGCAAAGCGGCACCACTCTCACCACAAGTCGGATTGAGCTTATC 780 consensus_1880#1 ATATTTAAGTATGTTCTGNCAAGCTGCACCACTTTCNACCACAGTTGGTTTAAGTTTATC 568 ****** ** ***** ** **** ******** ** * *** ** ** ** ***** consensus_1880#0 CGAAGATACACCATTAATGTGCGAATTCAAAATTGCTGAGATGGGTCATGTTCGTTTCTA 840 consensus_1880#1 CGAAGATACACCATTAATGTGCGAAATTTANATTT------------------------- 603 ************************* * * *** consensus_1880#0 CTTGGCACCGAAAATTGAAGATGCTGAAAACTAAAACAGGATATTCATTACCAATAGACT 900 consensus_1880#1 ------------------------------------------------------------ consensus_1880#0 TGTCAGATGGATACTATTTTTCTTTGTCTCTATTTTTTTGTTGTTACTATGTAATTGTAA 960 consensus_1880#1 ------------------------------------------------------------ consensus_1880#0 AAAAGAAAGAACGTGTCTTTTGGATGTAGTAGAATATTTTTCTTATGGAATTCCTCCACT 1020 consensus_1880#1 ------------------------------------------------------------ consensus_1880#0 TAACGGATATAACGGTTGTCTTGATTCTCTTTC 1053 consensus_1880#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||