cluster # 1891

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Oryza sativa
cluster # 1891 cluster # 1891 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1891#0 length = 821 sequences # 1

consensus_1891#1 length = 586 sequences # 1

consensusID : consensus_1891#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 821
fasta sequence

                              [TTCCCCCAAATCACGCCCAGATGCGACCTCCTGCCTCCACGCCTTCCTCCCCGCAAATCCCTCCCCTCTCCACGCTGCTCCCCCTCACTCCCTCCCTGCCTTCCTCCCCGCACATCCCTCCTGCTCAACGCGGCGGCGGCGGCCGGTGGGGGAGGCGACGAGCGGACGCCTGTGTTCTTGCGTACATGCGGCCTCGGCGGCGGCGGTGACGAGCGGACAAGGCATCGGCGGCAACAAGCAGACGCGGCCTTGTCGGCGGCGGCGACCGGCGAACACAGCGACGGCGGCGACGAGCGGACACGGTCTCGTCGGGGTTTTTGTTAGTTCTTGTAGTATCTCTTTTTCTCTGTTCTCGGCTCTGTTCTTCATTGACAGATGCGAGGCTCCACCAGTCCACCTCCCCACACCTCCCTCCGTCGTGTTGGAAGCTTTGCTACGCGGCGGCGGCGATGGAGCCTTGCATGCGTGTGGTATACTGGTATGTGGCCGATGCTTGCTTTGCATGCTGATGGATGTGGCTTGCTCGGATGCAGCTGTTATGGTGGAAGGGATTGACGATGGGAAGGACAGCACAAGGAAATTCATGCTTGTCTTTTTTTACCGTTAATTAATGGTTGTACTTTGTACTTTGGTGAGGGCATACTAGTCTTTTGCAACTGCTGTTAAAGTTATCTCGGGCTTTTAGAAATCGTGATTTTGTGGGACGGAGGGAGTATATTGTAGGGGTAACACTATTTATTTTTCAGTGTCGACAAGGGACAGTGGTGGTCATGAGCTCATGCAAGCTCGATTTAGCTAGCTTACCTAGCCTTGTCTCAGGC]

[+] EMBL CB627327             [TTCCCCCAAATCACGCCCAGATGCGACCTCCTGCCTCCACGCCTTCCTCCCCGCAAATCCCTCCCCTCTCCACGCTGCTCCCCCTCACTCCCTCCCTGCCTTCCTCCCCGCACATCCCTCCTGCTCAACGCGGCGGCGGCGGCCGGTGGGGGAGGCGACGAGCGGACGCCTGTGTTCTTGCGTACATGCGGCCTCGGCGGCGGCGGTGACGAGCGGACAAGGCATCGGCGGCAACAAGCAGACGCGGCCTTGTCGGCGGCGGCGACCGGCGAACACAGCGACGGCGGCGACGAGCGGACACGGTCTCGTCGGGGTTTTTGTTAGTTCTTGTAGTATCTCTTTTTCTCTGTTCTCGGCTCTGTTCTTCATTGACAGATGCGAGGCTCCACCAGTCCACCTCCCCACACCTCCCTCCGTCGTGTTGGAAGCTTTGCTACGCGGCGGCGGCGATGGAGCCTTGCATGCGTGTGGTATACTGGTATGTGGCCGATGCTTGCTTTGCATGCTGATGGATGTGGCTTGCTCGGATGCAGCTGTTATGGTGGAAGGGATTGACGATGGGAAGGACAGCACAAGGAAATTCATGCTTGTCTTTTTTTACCGTTAATTAATGGTTGTACTTTGTACTTTGGTGAGGGCATACTAGTCTTTTGCAACTGCTGTTAAAGTTATCTCGGGCTTTTAGAAATCGTGATTTTGTGGGACGGAGGGAGTATATTGTAGGGGTAACACTATTTATTTTTCAGTGTCGACAAGGGACAGTGGTGGTCATGAGCTCATGCAAGCTCGATTTAGCTAGCTTACCTAGCCTTGTCTCAGGC]




>consensus_1891#0
TTCCCCCAAATCACGCCCAGATGCGACCTCCTGCCTCCACGCCTTCCTCCCCGCAAATCC
CTCCCCTCTCCACGCTGCTCCCCCTCACTCCCTCCCTGCCTTCCTCCCCGCACATCCCTC
CTGCTCAACGCGGCGGCGGCGGCCGGTGGGGGAGGCGACGAGCGGACGCCTGTGTTCTTG
CGTACATGCGGCCTCGGCGGCGGCGGTGACGAGCGGACAAGGCATCGGCGGCAACAAGCA
GACGCGGCCTTGTCGGCGGCGGCGACCGGCGAACACAGCGACGGCGGCGACGAGCGGACA
CGGTCTCGTCGGGGTTTTTGTTAGTTCTTGTAGTATCTCTTTTTCTCTGTTCTCGGCTCT
GTTCTTCATTGACAGATGCGAGGCTCCACCAGTCCACCTCCCCACACCTCCCTCCGTCGT
GTTGGAAGCTTTGCTACGCGGCGGCGGCGATGGAGCCTTGCATGCGTGTGGTATACTGGT
ATGTGGCCGATGCTTGCTTTGCATGCTGATGGATGTGGCTTGCTCGGATGCAGCTGTTAT
GGTGGAAGGGATTGACGATGGGAAGGACAGCACAAGGAAATTCATGCTTGTCTTTTTTTA
CCGTTAATTAATGGTTGTACTTTGTACTTTGGTGAGGGCATACTAGTCTTTTGCAACTGC
TGTTAAAGTTATCTCGGGCTTTTAGAAATCGTGATTTTGTGGGACGGAGGGAGTATATTG
TAGGGGTAACACTATTTATTTTTCAGTGTCGACAAGGGACAGTGGTGGTCATGAGCTCAT
GCAAGCTCGATTTAGCTAGCTTACCTAGCCTTGTCTCAGGC

consensusID : consensus_1891#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence

                              [CCTCCTGCCTCCACGCCTTCCTCCCCGCAGATCCCTCCCCTCTCCACGCCGCTCCCCTCACGCCCTCCCTGCCTTCCTCCCCGCACATCCCTCCTGCTCAACGCGGCGGCGGTGGTCGGCGGGGGAGGCGACGAGCGGACGCCGGTGTTCTTGCGTACATGCGGCCTCGGCGGCGGCGGTGACGAGCGGACAAGGCATTGGCAGCAACAAGCGGACGCGGCCTCGTCGGCAGCGGCTACCGGCGAACACGGCGGCGGCGACGAGCGGACACGGCCTCGTCAGGGTTCTTGCTAGTTCTTGTAGTATCTGGTTCTTGCTAGTTCTTGTAGTATGTCTTTTTCTCTGTTCTTCATTGACAGATGCAAGGCTCCACCAGTCCACCTCCCCGCACCTCCCTCCGTTGTGTTGGAGGCTTTGCTACGCGGCGGCGGCGGTGGAGCCTTGCATGCGTGTGGTATACTAGTATGTGGCCGATAATTGCTTTGCATGCTGATGGATGTGGCTTTACTCGGATGCAGCTGTTATGGTGGAAGGGGATTGATGATGGGAAGGACAGCCACAGGGAAATTCATGCTTGTCTTTTTTT]

[+] EMBL AK121026             [CCTCCTGCCTCCACGCCTTCCTCCCCGCAGATCCCTCCCCTCTCCACGCCGCTCCCCTCACGCCCTCCCTGCCTTCCTCCCCGCACATCCCTCCTGCTCAACGCGGCGGCGGTGGTCGGCGGGGGAGGCGACGAGCGGACGCCGGTGTTCTTGCGTACATGCGGCCTCGGCGGCGGCGGTGACGAGCGGACAAGGCATTGGCAGCAACAAGCGGACGCGGCCTCGTCGGCAGCGGCTACCGGCGAACACGGCGGCGGCGACGAGCGGACACGGCCTCGTCAGGGTTCTTGCTAGTTCTTGTAGTATCTGGTTCTTGCTAGTTCTTGTAGTATGTCTTTTTCTCTGTTCTTCATTGACAGATGCAAGGCTCCACCAGTCCACCTCCCCGCACCTCCCTCCGTTGTGTTGGAGGCTTTGCTACGCGGCGGCGGCGGTGGAGCCTTGCATGCGTGTGGTATACTAGTATGTGGCCGATAATTGCTTTGCATGCTGATGGATGTGGCTTTACTCGGATGCAGCTGTTATGGTGGAAGGGGATTGATGATGGGAAGGACAGCCACAGGGAAATTCATGCTTGTCTTTTTTT]




>consensus_1891#1
CCTCCTGCCTCCACGCCTTCCTCCCCGCAGATCCCTCCCCTCTCCACGCCGCTCCCCTCA
CGCCCTCCCTGCCTTCCTCCCCGCACATCCCTCCTGCTCAACGCGGCGGCGGTGGTCGGC
GGGGGAGGCGACGAGCGGACGCCGGTGTTCTTGCGTACATGCGGCCTCGGCGGCGGCGGT
GACGAGCGGACAAGGCATTGGCAGCAACAAGCGGACGCGGCCTCGTCGGCAGCGGCTACC
GGCGAACACGGCGGCGGCGACGAGCGGACACGGCCTCGTCAGGGTTCTTGCTAGTTCTTG
TAGTATCTGGTTCTTGCTAGTTCTTGTAGTATGTCTTTTTCTCTGTTCTTCATTGACAGA
TGCAAGGCTCCACCAGTCCACCTCCCCGCACCTCCCTCCGTTGTGTTGGAGGCTTTGCTA
CGCGGCGGCGGCGGTGGAGCCTTGCATGCGTGTGGTATACTAGTATGTGGCCGATAATTG
CTTTGCATGCTGATGGATGTGGCTTTACTCGGATGCAGCTGTTATGGTGGAAGGGGATTG
ATGATGGGAAGGACAGCCACAGGGAAATTCATGCTTGTCTTTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1891#0      TTCCCCCAAATCACGCCCAGATGCGACCTCCTGCCTCCACGCCTTCCTCCCCGCAAATCC 60
consensus_1891#1      --------------------------CCTCCTGCCTCCACGCCTTCCTCCCCGCAGATCC 34
                                                ***************************** ****

consensus_1891#0      CTCCCCTCTCCACGCTGCTCCCCCTCACTCCCTCCCTGCCTTCCTCCCCGCACATCCCTC 120
consensus_1891#1      CTCCCCTCTCCACGCCGCTCCCC-TCACGCCCTCCCTGCCTTCCTCCCCGCACATCCCTC 93
                      *************** ******* **** *******************************

consensus_1891#0      CTGCTCAACGCGGCGGCGGCGGCCGGTGGGGGAGGCGACGAGCGGACGCCTGTGTTCTTG 180
consensus_1891#1      CTGCTCAACGCGGCGGCGGTGGTCGGCGGGGGAGGCGACGAGCGGACGCCGGTGTTCTTG 153
                      ******************* ** *** *********************** *********

consensus_1891#0      CGTACATGCGGCCTCGGCGGCGGCGGTGACGAGCGGACAAGGCATCGGCGGCAACAAGCA 240
consensus_1891#1      CGTACATGCGGCCTCGGCGGCGGCGGTGACGAGCGGACAAGGCATTGGCAGCAACAAGCG 213
                      ********************************************* *** ********* 

consensus_1891#0      GACGCGGCCTTGTCGGCGGCGGCGACCGGCGAACACAGCGACGGCGGCGACGAGCGGACA 300
consensus_1891#1      GACGCGGCCTCGTCGGCAGCGGCTACCGGCGAACACGG---CGGCGGCGACGAGCGGACA 270
                      ********** ****** ***** ************ *   *******************

consensus_1891#0      CGGTCTCGTCGGGGTTTTTGTTAGTTCTTGTAGTATCTCTTTTTCTCT-GTTCTCGG--- 356
consensus_1891#1      CGGCCTCGTCAGGGTTCTTGCTAGTTCTTGTAGTATCTGGTTCTTGCTAGTTCTTGTAGT 330
                      *** ****** ***** *** *****************  ** *  ** ***** *    

consensus_1891#0      ----------CTCTGTTCTTCATTGACAGATGCGAGGCTCCACCAGTCCACCTCCCCACA 406
consensus_1891#1      ATGTCTTTTTCTCTGTTCTTCATTGACAGATGCAAGGCTCCACCAGTCCACCTCCCCGCA 390
                                *********************** *********************** **

consensus_1891#0      CCTCCCTCCGTCGTGTTGGAAGCTTTGCTACGCGGCGGCGGCGATGGAGCCTTGCATGCG 466
consensus_1891#1      CCTCCCTCCGTTGTGTTGGAGGCTTTGCTACGCGGCGGCGGCGGTGGAGCCTTGCATGCG 450
                      *********** ******** ********************** ****************

consensus_1891#0      TGTGGTATACTGGTATGTGGCCGATGCTTGCTTTGCATGCTGATGGATGTGGCTT-GCTC 525
consensus_1891#1      TGTGGTATACTAGTATGTGGCCGATAATTGCTTTGCATGCTGATGGATGTGGCTTTACTC 510
                      *********** *************  ****************************  ***

consensus_1891#0      GGATGCAGCTGTTATGGTGGAAGGG-ATTGACGATGGGAAGGACAGC-ACAAGGAAATTC 583
consensus_1891#1      GGATGCAGCTGTTATGGTGGAAGGGGATTGATGATGGGAAGGACAGCCACAGGGAAATTC 570
                      ************************* ***** *************** *** ********

consensus_1891#0      ATGCTTGTCTTTTTTTACCGTTAATTAATGGTTGTACTTTGTACTTTGGTGAGGGCATAC 643
consensus_1891#1      ATGCTTGTCTTTTTTT-------------------------------------------- 586
                      ****************                                            

consensus_1891#0      TAGTCTTTTGCAACTGCTGTTAAAGTTATCTCGGGCTTTTAGAAATCGTGATTTTGTGGG 703
consensus_1891#1      ------------------------------------------------------------
                                                                                  

consensus_1891#0      ACGGAGGGAGTATATTGTAGGGGTAACACTATTTATTTTTCAGTGTCGACAAGGGACAGT 763
consensus_1891#1      ------------------------------------------------------------
                                                                                  

consensus_1891#0      GGTGGTCATGAGCTCATGCAAGCTCGATTTAGCTAGCTTACCTAGCCTTGTCTCAGGC 821
consensus_1891#1      ----------------------------------------------------------