These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1900#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [TCGTGCCGAATTCGGCACGAGAGGAATCTCCATGATACAAAACAAAACCAACCCTACATGTGTTCTATTGCTGACACACGGCAGTTGTAACTACATGTTAAATGGTGGCATACTATACACCTGTACAATACACGCAACAAACAATAACCACTTACATGCCATCCTCCACCCTGAAATAGAAAACCATTTTTAGCATGTTGGTGCTTCATTTTGTATTCCATTGGGGTATAAAAATGGTACAAAACAACCATTTTTAACCCAATTTTGTTATTCCTTTGCGGATATAAATATGGTATACATTGTAACTTGATATCCCCCAACCGGGGGGCCTCAGGTAAAACTCCAAGGGGGGGGGCCCCGGGTACCCAAATTCCCCCTATAGTGAGTTCCTTATTTACAATTCACTTGGCCGTCCTTTTTTACAACTTCCTTGNACTGGGGAAAAACCCCNTGNCCTTTACCCCAACTTTAATCCCCCTTTGCAACAAATTCCCCCCTTTCCCCCACTTGGCCTTAATNACCCAAAAAAAGGCCCCCCCCCNTTCCCCCCTTCCCCAACAATTTCCCCCNCCCCTGAATTNCCNAAATGGC] [+] EMBL AA754036 [TCGTGCCGAATTCGGCACGAGAGGAATCTCCATGATACAAAACAAAACCAACCCTACATGTGTTCTATTGCTGACACACGGCAGTTGTAACTACATGTTAAATGGTGGCATACTATACACCTGTACAATACACGCAACAAACAATAACCACTTACATGCCATCCTCCACCCTGAAATAGAAAACCATTTTTAGCATGTTGGTGCTTCATTTTGTATTCCATTGGGGTATAAAAATGGTACAAAACAACCATTTTTAACCCAATTTTGTTATTCCTTTGCGGATATAAATATGGTATACATTGTAACTTGATATCCCCCAACCGGGGGGCCTCAGGTAAAACTCCAAGGGGGGGGGCCCCGGGTACCCAAATTCCCCCTATAGTGAGTTCCTTATTTACAATTCACTTGGCCGTCCTTTTTTACAACTTCCTTGNACTGGGGAAAAACCCCNTGNCCTTTACCCCAACTTTAATCCCCCTTTGCAACAAATTCCCCCCTTTCCCCCACTTGGCCTTAATNACCCAAAAAAAGGCCCCCCCCCNTTCCCCCCTTCCCCAACAATTTCCCCCNCCCCTGAATTNCCNAAATGGC] consensusID : consensus_1900#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 533 fasta sequence [AGGGGGGCCGCCGTCTTGGTAAGGCTCGCCTCTCCGCGGATGCTCGCAAGAGAAAGCTGAAAAAGCTCGGAGATTGTGTGTTGACATCAGCTTCGTCTCTTTATGTCTGTGAGATGGGAGTTAAATGACAGCACGAAATTCCATTCTCTTTAGGTGCACTGGTGCAGTCCTCCCCACCTACAAGGATCAGCCACCATCACTGCCGCTGCTGCACCATTGCAGCTTTCCTTTCTGGAATCTCCATGATACAAAACAAAACCAACCCTAGATGTGTTCTATTGCTGACACAGGGAGTTGTAAGTACATGTTAAATGGTGGCATACTATACAGCTGTACAATAGACGCAAGAAACAATAACCACTTACATGCCATCCTCCACCCTGAAATAGAAAACCATTTTTAGCATGTTGGTGCTTCATTTTGTATTCCATTGGGATATAAAAATGGTAGAGAACAACCATTTTTAACCCAATTTTGTATTCCTTTGCGGATATAAATATGGTATAGATTGTAACTTGATATCTGGACTCAAA] [+] EMBL CA765775 [AGGGGGGCCGCCGTCTTGGTAAGGCTCGCCTCTCCGCGGATGCTCGCAAGAGAAAGCTGAAAAAGCTCGGAGATTGTGTGTTGACATCAGCTTCGTCTCTTTATGTCTGTGAGATGGGAGTTAAATGACAGCACGAAATTCCATTCTCTTTAGGTGCACTGGTGCAGTCCTCCCCACCTACAAGGATCAGCCACCATCACTGCCGCTGCTGCACCATTGCAGCTTTCCTTTCTGGAATCTCCATGATACAAAACAAAACCAACCCTAGATGTGTTCTATTGCTGACACAGGGAGTTGTAAGTACATGTTAAATGGTGGCATACTATACAGCTGTACAATAGACGCAAGAAACAATAACCACTTACATGCCATCCTCCACCCTGAAATAGAAAACCATTTTTAGCATGTTGGTGCTTCATTTTGTATTCCATTGGGATATAAAAATGGTAGAGAACAACCATTTTTAACCCAATTTTGTATTCCTTTGCGGATATAAATATGGTATAGATTGTAACTTGATATCTGGACTCAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1900#0 ------------------------------------------------------------ consensus_1900#1 AGGGGGGCCGCCGTCTTGGTAAGGCTCGCCTCTCCGCGGATGCTCGCAAGAGAAAGCTGA 60 consensus_1900#0 ------------------------------------------------------------ consensus_1900#1 AAAAGCTCGGAGATTGTGTGTTGACATCAGCTTCGTCTCTTTATGTCTGTGAGATGGGAG 120 consensus_1900#0 ------------------------------------------------------------ consensus_1900#1 TTAAATGACAGCACGAAATTCCATTCTCTTTAGGTGCACTGGTGCAGTCCTCCCCACCTA 180 consensus_1900#0 -------------------------------TCGTGCCGAATTCGGCACGAGAGGAATCT 29 consensus_1900#1 CAAGGATCAGCCACCATCACTGCCGCTGCTGCACCATTGCAGCTTTCCTTTCTGGAATCT 240 * * * ******* consensus_1900#0 CCATGATACAAAACAAAACCAACCCTACATGTGTTCTATTGCTGACACACGGCAGTTGTA 89 consensus_1900#1 CCATGATACAAAACAAAACCAACCCTAGATGTGTTCTATTGCTGACACA-GGGAGTTGTA 299 *************************** ********************* ** ******* consensus_1900#0 ACTACATGTTAAATGGTGGCATACTATACACCTGTACAATACACGCAACAAACAATAACC 149 consensus_1900#1 AGTACATGTTAAATGGTGGCATACTATACAGCTGTACAATAGACGCAAGAAACAATAACC 359 * **************************** ********** ****** *********** consensus_1900#0 ACTTACATGCCATCCTCCACCCTGAAATAGAAAACCATTTTTAGCATGTTGGTGCTTCAT 209 consensus_1900#1 ACTTACATGCCATCCTCCACCCTGAAATAGAAAACCATTTTTAGCATGTTGGTGCTTCAT 419 ************************************************************ consensus_1900#0 TTTGTATTCCATTGGGGTATAAAAATGGTACAAAACAACCATTTTTAACCCAATTTTGTT 269 consensus_1900#1 TTTGTATTCCATTGGGATATAAAAATGGTAGAGAACAACCATTTTTAACCCAATTTTGT- 478 **************** ************* * ************************** consensus_1900#0 ATTCCTTTGCGGATATAAATATGGTATACATTGTAACTTGATATCCCCCAACCGGGGGGC 329 consensus_1900#1 ATTCCTTTGCGGATATAAATATGGTATAGATTGTAACTTGATATCT--GGACTCAAA--- 533 **************************** **************** ** consensus_1900#0 CTCAGGTAAAACTCCAAGGGGGGGGGCCCCGGGTACCCAAATTCCCCCTATAGTGAGTTC 389 consensus_1900#1 ------------------------------------------------------------ consensus_1900#0 CTTATTTACAATTCACTTGGCCGTCCTTTTTTACAACTTCCTTGNACTGGGGAAAAACCC 449 consensus_1900#1 ------------------------------------------------------------ consensus_1900#0 CNTGNCCTTTACCCCAACTTTAATCCCCCTTTGCAACAAATTCCCCCCTTTCCCCCACTT 509 consensus_1900#1 ------------------------------------------------------------ consensus_1900#0 GGCCTTAATNACCCAAAAAAAGGCCCCCCCCCNTTCCCCCCTTCCCCAACAATTTCCCCC 569 consensus_1900#1 ------------------------------------------------------------ consensus_1900#0 NCCCCTGAATTNCCNAAATGGC 591 consensus_1900#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||