cluster # 191

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Oryza sativa
cluster # 191 cluster # 191 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_191#0 length = 687 sequences # 1

consensus_191#1 length = 491 sequences # 1

consensusID : consensus_191#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence

                              [TTTTTTTTTTTTTTGAACTCTCTGCTTCTGAATTCTAGTTTTGTTACTGTTCTTCTCAACGTATCAAATTATTTACACAAGGGTTACAAACAGAGCATCAATAAGGAGCAGCTTGTAAGATTTATATACAGCAACAACCTTAAAAGGGAATTACACCTGATGCACTACGTTTCATGCAGCAAAAGATTAAACAGAAGAGGAAAATCCTAATAAGTTTTTCTAAGCTAGAATGAGCACTACTAAATAGTCTACATGCTTCAGCAAGATGTTATATGTATTATATCTCTTATCAACATTGGGGTCTACAAATTCTGTAAGCGGGCAATCAGCAGGTGATAATTAAGGATATCCAAGCAATTCTTCCAGAGTTACAGCATATTCTTGAGCTATTTCCTTGATCAACTCCTATGCACTACTGTAGCCGAAGGAAAATGAGACCACCTGAAAAGCGATTCACTAGGATATCATTAACACTAATCCATTCAATGGTGAAGGAATCCAAATCTATTGTGGCCTTCACTCCACTTAGACCACTTGCTATGCACGAGTGCTCAGTGCTCACTGTTCAGCATGAAAACATTGAAGATTCCGGGGCCATCTTGGTGCTATTGCGCTACCAAAATCATTGCAGGTCACCATTACTGGCCACCATTCCGGTCAAGGACTATCCTCCATATAAAAGCCTCT]

[+] EMBL CA760822             [TTTTTTTTTTTTTTGAACTCTCTGCTTCTGAATTCTAGTTTTGTTACTGTTCTTCTCAACGTATCAAATTATTTACACAAGGGTTACAAACAGAGCATCAATAAGGAGCAGCTTGTAAGATTTATATACAGCAACAACCTTAAAAGGGAATTACACCTGATGCACTACGTTTCATGCAGCAAAAGATTAAACAGAAGAGGAAAATCCTAATAAGTTTTTCTAAGCTAGAATGAGCACTACTAAATAGTCTACATGCTTCAGCAAGATGTTATATGTATTATATCTCTTATCAACATTGGGGTCTACAAATTCTGTAAGCGGGCAATCAGCAGGTGATAATTAAGGATATCCAAGCAATTCTTCCAGAGTTACAGCATATTCTTGAGCTATTTCCTTGATCAACTCCTATGCACTACTGTAGCCGAAGGAAAATGAGACCACCTGAAAAGCGATTCACTAGGATATCATTAACACTAATCCATTCAATGGTGAAGGAATCCAAATCTATTGTGGCCTTCACTCCACTTAGACCACTTGCTATGCACGAGTGCTCAGTGCTCACTGTTCAGCATGAAAACATTGAAGATTCCGGGGCCATCTTGGTGCTATTGCGCTACCAAAATCATTGCAGGTCACCATTACTGGCCACCATTCCGGTCAAGGACTATCCTCCATATAAAAGCCTCT]




>consensus_191#0
TTTTTTTTTTTTTTGAACTCTCTGCTTCTGAATTCTAGTTTTGTTACTGTTCTTCTCAAC
GTATCAAATTATTTACACAAGGGTTACAAACAGAGCATCAATAAGGAGCAGCTTGTAAGA
TTTATATACAGCAACAACCTTAAAAGGGAATTACACCTGATGCACTACGTTTCATGCAGC
AAAAGATTAAACAGAAGAGGAAAATCCTAATAAGTTTTTCTAAGCTAGAATGAGCACTAC
TAAATAGTCTACATGCTTCAGCAAGATGTTATATGTATTATATCTCTTATCAACATTGGG
GTCTACAAATTCTGTAAGCGGGCAATCAGCAGGTGATAATTAAGGATATCCAAGCAATTC
TTCCAGAGTTACAGCATATTCTTGAGCTATTTCCTTGATCAACTCCTATGCACTACTGTA
GCCGAAGGAAAATGAGACCACCTGAAAAGCGATTCACTAGGATATCATTAACACTAATCC
ATTCAATGGTGAAGGAATCCAAATCTATTGTGGCCTTCACTCCACTTAGACCACTTGCTA
TGCACGAGTGCTCAGTGCTCACTGTTCAGCATGAAAACATTGAAGATTCCGGGGCCATCT
TGGTGCTATTGCGCTACCAAAATCATTGCAGGTCACCATTACTGGCCACCATTCCGGTCA
AGGACTATCCTCCATATAAAAGCCTCT

consensusID : consensus_191#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 491
fasta sequence

                              [CTGTTCTTCTCAACGTATCAAATTATTTACACAAGGGTTACAAACAGAGCATCAATAAGGAGCAGCTTGTAAGATTTATATACAGCAACAACCTTAAAAGGGAATTACACCTGATGCACTACGTTTCATGCAGCAAAAGATTAAACAGAAGAGGAAAATCCTAATAGGTTTTTCTAAGCTAGAATGAGCACTACTAAATAGTCTACATGCTTCAGCAAGATGTTATATGTATTATATCTCTTATCAACATTGGGGTCTACAAATTCTGTAAGCGGGCAATCAGCAGGTGATAATTAAGGATATCCAAGCAATTCTTCCAGAGTTACAGCATATTCTTGAGCTATTTCCTTGATCAGCTCCTATGCACTACTGTAGTCGAAGGAAAATGAGATGACATGAAAAGCGATTCAATAGGATATCATTAACACTAATCCATTCAATGTTGAAGGAATCCAAATCTATTGTGTCCTTCACTCCCCTTGTCTCGTCCT]

[+] EMBL CA761305             [CTGTTCTTCTCAACGTATCAAATTATTTACACAAGGGTTACAAACAGAGCATCAATAAGGAGCAGCTTGTAAGATTTATATACAGCAACAACCTTAAAAGGGAATTACACCTGATGCACTACGTTTCATGCAGCAAAAGATTAAACAGAAGAGGAAAATCCTAATAGGTTTTTCTAAGCTAGAATGAGCACTACTAAATAGTCTACATGCTTCAGCAAGATGTTATATGTATTATATCTCTTATCAACATTGGGGTCTACAAATTCTGTAAGCGGGCAATCAGCAGGTGATAATTAAGGATATCCAAGCAATTCTTCCAGAGTTACAGCATATTCTTGAGCTATTTCCTTGATCAGCTCCTATGCACTACTGTAGTCGAAGGAAAATGAGATGACATGAAAAGCGATTCAATAGGATATCATTAACACTAATCCATTCAATGTTGAAGGAATCCAAATCTATTGTGTCCTTCACTCCCCTTGTCTCGTCCT]




>consensus_191#1
CTGTTCTTCTCAACGTATCAAATTATTTACACAAGGGTTACAAACAGAGCATCAATAAGG
AGCAGCTTGTAAGATTTATATACAGCAACAACCTTAAAAGGGAATTACACCTGATGCACT
ACGTTTCATGCAGCAAAAGATTAAACAGAAGAGGAAAATCCTAATAGGTTTTTCTAAGCT
AGAATGAGCACTACTAAATAGTCTACATGCTTCAGCAAGATGTTATATGTATTATATCTC
TTATCAACATTGGGGTCTACAAATTCTGTAAGCGGGCAATCAGCAGGTGATAATTAAGGA
TATCCAAGCAATTCTTCCAGAGTTACAGCATATTCTTGAGCTATTTCCTTGATCAGCTCC
TATGCACTACTGTAGTCGAAGGAAAATGAGATGACATGAAAAGCGATTCAATAGGATATC
ATTAACACTAATCCATTCAATGTTGAAGGAATCCAAATCTATTGTGTCCTTCACTCCCCT
TGTCTCGTCCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_191#0      TTTTTTTTTTTTTTGAACTCTCTGCTTCTGAATTCTAGTTTTGTTACTGTTCTTCTCAAC 60
consensus_191#1      ----------------------------------------------CTGTTCTTCTCAAC 14
                                                                   **************

consensus_191#0      GTATCAAATTATTTACACAAGGGTTACAAACAGAGCATCAATAAGGAGCAGCTTGTAAGA 120
consensus_191#1      GTATCAAATTATTTACACAAGGGTTACAAACAGAGCATCAATAAGGAGCAGCTTGTAAGA 74
                     ************************************************************

consensus_191#0      TTTATATACAGCAACAACCTTAAAAGGGAATTACACCTGATGCACTACGTTTCATGCAGC 180
consensus_191#1      TTTATATACAGCAACAACCTTAAAAGGGAATTACACCTGATGCACTACGTTTCATGCAGC 134
                     ************************************************************

consensus_191#0      AAAAGATTAAACAGAAGAGGAAAATCCTAATAAGTTTTTCTAAGCTAGAATGAGCACTAC 240
consensus_191#1      AAAAGATTAAACAGAAGAGGAAAATCCTAATAGGTTTTTCTAAGCTAGAATGAGCACTAC 194
                     ******************************** ***************************

consensus_191#0      TAAATAGTCTACATGCTTCAGCAAGATGTTATATGTATTATATCTCTTATCAACATTGGG 300
consensus_191#1      TAAATAGTCTACATGCTTCAGCAAGATGTTATATGTATTATATCTCTTATCAACATTGGG 254
                     ************************************************************

consensus_191#0      GTCTACAAATTCTGTAAGCGGGCAATCAGCAGGTGATAATTAAGGATATCCAAGCAATTC 360
consensus_191#1      GTCTACAAATTCTGTAAGCGGGCAATCAGCAGGTGATAATTAAGGATATCCAAGCAATTC 314
                     ************************************************************

consensus_191#0      TTCCAGAGTTACAGCATATTCTTGAGCTATTTCCTTGATCAACTCCTATGCACTACTGTA 420
consensus_191#1      TTCCAGAGTTACAGCATATTCTTGAGCTATTTCCTTGATCAGCTCCTATGCACTACTGTA 374
                     ***************************************** ******************

consensus_191#0      GCCGAAGGAAAATGAGACCACCTGAAAAGCGATTCACTAGGATATCATTAACACTAATCC 480
consensus_191#1      GTCGAAGGAAAATGAGATGACATGAAAAGCGATTCAATAGGATATCATTAACACTAATCC 434
                     * ***************  ** ************** ***********************

consensus_191#0      ATTCAATGGTGAAGGAATCCAAATCTATTGTGGCCTTCACTCCACTTAGACCACTTGCTA 540
consensus_191#1      ATTCAATGTTGAAGGAATCCAAATCTATTGTGTCCTTCACTCCCCTTGTCTCGTCCT--- 491
                     ******** *********************** ********** ***    *        

consensus_191#0      TGCACGAGTGCTCAGTGCTCACTGTTCAGCATGAAAACATTGAAGATTCCGGGGCCATCT 600
consensus_191#1      ------------------------------------------------------------
                                                                                 

consensus_191#0      TGGTGCTATTGCGCTACCAAAATCATTGCAGGTCACCATTACTGGCCACCATTCCGGTCA 660
consensus_191#1      ------------------------------------------------------------
                                                                                 

consensus_191#0      AGGACTATCCTCCATATAAAAGCCTCT 687
consensus_191#1      ---------------------------