cluster # 1916

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Oryza sativa
cluster # 1916 cluster # 1916 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1916#0 length = 607 sequences # 1

consensus_1916#1 length = 408 sequences # 1

consensusID : consensus_1916#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 607
fasta sequence

                              [TAAGCTACCCGATGGCTCGCCGGCCTCACCCTCAATACATGGTGATTCATCCGGCTCGCATTCACCAGAGAGGTTGACTCCATCTCCGGTGATGCGTGAGGTGGATCTACCTCCTGAGTTTTGTGTTAGGGGGTCGCCAACGCCAGACTGGCCACCACCACCTACAGAATCAGATGAAGAGAGGTTTCGAGAAGATCTGGAGCAATACTACAATGATGGGTACGTGTCCACTCCATGCCCGTCACCACCATCTGATCTGTTCGATTGCGAAGAAAATTTGGAGGATGGAGATGTGGAAGATGATAATTTGAGGCATGGGGATGTGCTGCCTAAGGATAATCAATCAAAGGATACAGCGTCACCACCGAGCAAGCGCAAGAAGGTTTAGGATAGTACCGATAAGATTTGTCGTATTTAAATTGATTATTGAATTGTCGTTTTAAATAATTGCTACTTTTTCTTAGTGGCTGTGCTTAAATTTGTTAGTTGTGAATTTGTGAGTTTTGATCTAATTTCATGGGCATGAAATAAATAAGTTTATAAGTGTAGTGTAGATGTCAGTGTCGCTATCATGATGTATTCAGAAGAGATATATTCATGTGATTTG]

[+] EMBL AK121132             [TAAGCTACCCGATGGCTCGCCGGCCTCACCCTCAATACATGGTGATTCATCCGGCTCGCATTCACCAGAGAGGTTGACTCCATCTCCGGTGATGCGTGAGGTGGATCTACCTCCTGAGTTTTGTGTTAGGGGGTCGCCAACGCCAGACTGGCCACCACCACCTACAGAATCAGATGAAGAGAGGTTTCGAGAAGATCTGGAGCAATACTACAATGATGGGTACGTGTCCACTCCATGCCCGTCACCACCATCTGATCTGTTCGATTGCGAAGAAAATTTGGAGGATGGAGATGTGGAAGATGATAATTTGAGGCATGGGGATGTGCTGCCTAAGGATAATCAATCAAAGGATACAGCGTCACCACCGAGCAAGCGCAAGAAGGTTTAGGATAGTACCGATAAGATTTGTCGTATTTAAATTGATTATTGAATTGTCGTTTTAAATAATTGCTACTTTTTCTTAGTGGCTGTGCTTAAATTTGTTAGTTGTGAATTTGTGAGTTTTGATCTAATTTCATGGGCATGAAATAAATAAGTTTATAAGTGTAGTGTAGATGTCAGTGTCGCTATCATGATGTATTCAGAAGAGATATATTCATGTGATTTG]




>consensus_1916#0
TAAGCTACCCGATGGCTCGCCGGCCTCACCCTCAATACATGGTGATTCATCCGGCTCGCA
TTCACCAGAGAGGTTGACTCCATCTCCGGTGATGCGTGAGGTGGATCTACCTCCTGAGTT
TTGTGTTAGGGGGTCGCCAACGCCAGACTGGCCACCACCACCTACAGAATCAGATGAAGA
GAGGTTTCGAGAAGATCTGGAGCAATACTACAATGATGGGTACGTGTCCACTCCATGCCC
GTCACCACCATCTGATCTGTTCGATTGCGAAGAAAATTTGGAGGATGGAGATGTGGAAGA
TGATAATTTGAGGCATGGGGATGTGCTGCCTAAGGATAATCAATCAAAGGATACAGCGTC
ACCACCGAGCAAGCGCAAGAAGGTTTAGGATAGTACCGATAAGATTTGTCGTATTTAAAT
TGATTATTGAATTGTCGTTTTAAATAATTGCTACTTTTTCTTAGTGGCTGTGCTTAAATT
TGTTAGTTGTGAATTTGTGAGTTTTGATCTAATTTCATGGGCATGAAATAAATAAGTTTA
TAAGTGTAGTGTAGATGTCAGTGTCGCTATCATGATGTATTCAGAAGAGATATATTCATG
TGATTTG

consensusID : consensus_1916#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 408
fasta sequence

                              [AGGCGCATAGATGTCAGTGGGGGCTGATTTTGGCAAAGAGCTGTCTAAGCTACCCGATGGCTTGCCGGCCTCACCCTCAATACATGGTGATTCATCCGGCTCACATTCACCAGAGAGGTTGACTCCATCTCCAATGATGCGCGAGGTGGATCTACCTCCTGAGTTTCGTGTTAGGGGGCTGCCAATGCTAGATTGGCCACCACCACCTACAGAATCAGATGAGGAGAGGTTTCAAGAAGATCTTGAGCAATACTACAATGATGGGTACGTGTCCACTCCATGCCCATCACCAGCATCTGATCTGTGCGATAGCGAAGAAAATTTGGAAGATGAAGTGAGGAAGATGATAATCAGAGGCATGGGGATGTGCTGCCTAAGGTTAATCAATAAAGGATACAGCGTCGCCGC]

[+] EMBL CA763839             [AGGCGCATAGATGTCAGTGGGGGCTGATTTTGGCAAAGAGCTGTCTAAGCTACCCGATGGCTTGCCGGCCTCACCCTCAATACATGGTGATTCATCCGGCTCACATTCACCAGAGAGGTTGACTCCATCTCCAATGATGCGCGAGGTGGATCTACCTCCTGAGTTTCGTGTTAGGGGGCTGCCAATGCTAGATTGGCCACCACCACCTACAGAATCAGATGAGGAGAGGTTTCAAGAAGATCTTGAGCAATACTACAATGATGGGTACGTGTCCACTCCATGCCCATCACCAGCATCTGATCTGTGCGATAGCGAAGAAAATTTGGAAGATGAAGTGAGGAAGATGATAATCAGAGGCATGGGGATGTGCTGCCTAAGGTTAATCAATAAAGGATACAGCGTCGCCGC]




>consensus_1916#1
AGGCGCATAGATGTCAGTGGGGGCTGATTTTGGCAAAGAGCTGTCTAAGCTACCCGATGG
CTTGCCGGCCTCACCCTCAATACATGGTGATTCATCCGGCTCACATTCACCAGAGAGGTT
GACTCCATCTCCAATGATGCGCGAGGTGGATCTACCTCCTGAGTTTCGTGTTAGGGGGCT
GCCAATGCTAGATTGGCCACCACCACCTACAGAATCAGATGAGGAGAGGTTTCAAGAAGA
TCTTGAGCAATACTACAATGATGGGTACGTGTCCACTCCATGCCCATCACCAGCATCTGA
TCTGTGCGATAGCGAAGAAAATTTGGAAGATGAAGTGAGGAAGATGATAATCAGAGGCAT
GGGGATGTGCTGCCTAAGGTTAATCAATAAAGGATACAGCGTCGCCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1916#0      ---------------------------------------------TAAGCTACCCGATGG 15
consensus_1916#1      AGGCGCATAGATGTCAGTGGGGGCTGATTTTGGCAAAGAGCTGTCTAAGCTACCCGATGG 60
                                                                   ***************

consensus_1916#0      CTCGCCGGCCTCACCCTCAATACATGGTGATTCATCCGGCTCGCATTCACCAGAGAGGTT 75
consensus_1916#1      CTTGCCGGCCTCACCCTCAATACATGGTGATTCATCCGGCTCACATTCACCAGAGAGGTT 120
                      ** *************************************** *****************

consensus_1916#0      GACTCCATCTCCGGTGATGCGTGAGGTGGATCTACCTCCTGAGTTTTGTGTTAGGGGGTC 135
consensus_1916#1      GACTCCATCTCCAATGATGCGCGAGGTGGATCTACCTCCTGAGTTTCGTGTTAGGGGGCT 180
                      ************  ******* ************************ ***********  

consensus_1916#0      GCCAACGCCAGACTGGCCACCACCACCTACAGAATCAGATGAAGAGAGGTTTCGAGAAGA 195
consensus_1916#1      GCCAATGCTAGATTGGCCACCACCACCTACAGAATCAGATGAGGAGAGGTTTCAAGAAGA 240
                      ***** ** *** ***************************** ********** ******

consensus_1916#0      TCTGGAGCAATACTACAATGATGGGTACGTGTCCACTCCATGCCCGTCACCACCATCTGA 255
consensus_1916#1      TCTTGAGCAATACTACAATGATGGGTACGTGTCCACTCCATGCCCATCACCAGCATCTGA 300
                      *** ***************************************** ****** *******

consensus_1916#0      TCTGTTCGATTGCGAAGAAAATTTGGAGGATGGAGATGTGGAAGATGATAATTTGAGGCA 315
consensus_1916#1      TCTGTGCGATAGCGAAGAAAATTTGGAAGATGAAG-TGAGGAAGATGATAATCAGAGGCA 359
                      ***** **** **************** **** ** ** *************  ******

consensus_1916#0      TGGGGATGTGCTGCCTAAGGATAATCAATCAAAGGATACAGCGTCACCACCGAGCAAGCG 375
consensus_1916#1      TGGGGATGTGCTGCCTAAGGTTAATCAAT-AAAGGATACAGCGTCGCCGC---------- 408
                      ******************** ******** *************** ** *          

consensus_1916#0      CAAGAAGGTTTAGGATAGTACCGATAAGATTTGTCGTATTTAAATTGATTATTGAATTGT 435
consensus_1916#1      ------------------------------------------------------------
                                                                                  

consensus_1916#0      CGTTTTAAATAATTGCTACTTTTTCTTAGTGGCTGTGCTTAAATTTGTTAGTTGTGAATT 495
consensus_1916#1      ------------------------------------------------------------
                                                                                  

consensus_1916#0      TGTGAGTTTTGATCTAATTTCATGGGCATGAAATAAATAAGTTTATAAGTGTAGTGTAGA 555
consensus_1916#1      ------------------------------------------------------------
                                                                                  

consensus_1916#0      TGTCAGTGTCGCTATCATGATGTATTCAGAAGAGATATATTCATGTGATTTG 607
consensus_1916#1      ----------------------------------------------------