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Oryza sativa
cluster # 1927 cluster # 1927       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1927#0 length = 802 sequences # 1  
consensus_1927#1 length = 608 sequences # 1  

consensusID : consensus_1927#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 802
fasta sequence
                              [ACGACGGGGAGCGGGAGCGGGAGCGCGAGGGAGATGGGCTCGACGAACAGCCCGGTGGTGGTGGTGGTGCCGGACCCCGTGGTGGTGGGGGTGGGGCTCCACCACCCGCACCCGGCCGCCGCGCTGATCTCCCGCCGCGTCGCCATGGCGCGGGACTACGCCGCCGCCGCCGCCGTCCTCCGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCACGTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCGCGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTTGGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGAGAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGGTTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAATAGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGCAGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTCTTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCTGAAGAACGCAATACCAATAAGTAACTGAAGATTCCACATGAGCCATGCCATTGCAACCTGCTCGCCATGGCTATTTTGCAGC]

[+] EMBL AK062836             [ACGACGGGGAGCGGGAGCGGGAGCGCGAGGGAGATGGGCTCGACGAACAGCCCGGTGGTGGTGGTGGTGCCGGACCCCGTGGTGGTGGGGGTGGGGCTCCACCACCCGCACCCGGCCGCCGCGCTGATCTCCCGCCGCGTCGCCATGGCGCGGGACTACGCCGCCGCCGCCGCCGTCCTCCGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCACGTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCGCGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTTGGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGAGAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGGTTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAATAGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGCAGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTCTTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCTGAAGAACGCAATACCAATAAGTAACTGAAGATTCCACATGAGCCATGCCATTGCAACCTGCTCGCCATGGCTATTTTGCAGC]


>consensus_1927#0 ACGACGGGGAGCGGGAGCGGGAGCGCGAGGGAGATGGGCTCGACGAACAGCCCGGTGGTG GTGGTGGTGCCGGACCCCGTGGTGGTGGGGGTGGGGCTCCACCACCCGCACCCGGCCGCC GCGCTGATCTCCCGCCGCGTCGCCATGGCGCGGGACTACGCCGCCGCCGCCGCCGTCCTC CGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCAC GTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCG CGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTT GGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGA GAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGG TTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAAT AGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGC AGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTC TTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCT GAAGAACGCAATACCAATAAGTAACTGAAGATTCCACATGAGCCATGCCATTGCAACCTG CTCGCCATGGCTATTTTGCAGC



consensusID : consensus_1927#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence
                              [CCGGCGCCGCCGCCGTCCTCCGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCACGTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCGCGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTTGGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGAGAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGGTTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAATAGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGCAGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTCTTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCTGAAGAACGCAATACCAATAAGTAACTGAAGATTCCACAAAAAAAAAAA]

[+] EMBL BE039654             [CCGGCGCCGCCGCCGTCCTCCGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCACGTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCGCGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTTGGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGAGAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGGTTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAATAGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGCAGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTCTTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCTGAAGAACGCAATACCAATAAGTAACTGAAGATTCCACAAAAAAAAAAA]


>consensus_1927#1 CCGGCGCCGCCGCCGTCCTCCGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCG TCCTCCTCATCGCCGCCCACGTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCG ACGGCTCAAGGCAGCCCGCGCGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTT CCTGGTAATGTTTTCCATTTGGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCA ATGCGAAGTGATAGCGTGGAGAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGT GATTTTTGTTCAGATGTTGGTTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAG AAGACCTTGTGATCATAAATAGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCT TTCATGTAAAGACCAGTAGCAGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGT ACATCTTGAGCAACTTTTTCTTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACC ATGCTTCTTTCTATCTGTCTGAAGAACGCAATACCAATAAGTAACTGAAGATTCCACAAA AAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1927#0      ACGACGGGGAGCGGGAGCGGGAGCGCGAGGGAGATGGGCTCGACGAACAGCCCGGTGGTG 60
consensus_1927#1      ------------------------------------------------------------
                                                                                  

consensus_1927#0      GTGGTGGTGCCGGACCCCGTGGTGGTGGGGGTGGGGCTCCACCACCCGCACCCGGCCGCC 120
consensus_1927#1      ------------------------------------------------------------
                                                                                  

consensus_1927#0      GCGCTGATCTCCCGCCGCGTCGCCATGGCGCGGGACTACGCCGCCGCCGCCGCCGTCCTC 180
consensus_1927#1      ----------------------------------------CCGGCGCCGCCGCCGTCCTC 20
                                                              *** ****************

consensus_1927#0      CGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCAC 240
consensus_1927#1      CGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCAC 80
                      ************************************************************

consensus_1927#0      GTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCG 300
consensus_1927#1      GTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCG 140
                      ************************************************************

consensus_1927#0      CGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTT 360
consensus_1927#1      CGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTT 200
                      ************************************************************

consensus_1927#0      GGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGA 420
consensus_1927#1      GGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGA 260
                      ************************************************************

consensus_1927#0      GAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGG 480
consensus_1927#1      GAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGG 320
                      ************************************************************

consensus_1927#0      TTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAAT 540
consensus_1927#1      TTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAAT 380
                      ************************************************************

consensus_1927#0      AGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGC 600
consensus_1927#1      AGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGC 440
                      ************************************************************

consensus_1927#0      AGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTC 660
consensus_1927#1      AGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTC 500
                      ************************************************************

consensus_1927#0      TTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCT 720
consensus_1927#1      TTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCT 560
                      ************************************************************

consensus_1927#0      GAAGAACGCAATACCAATAAGTAACTGAAGATTCCACATGAGCCATGCCATTGCAACCTG 780
consensus_1927#1      GAAGAACGCAATACCAATAAGTAACTGAAGATTCCACAAAAAAAAAAA------------ 608
                      **************************************  *   *               

consensus_1927#0      CTCGCCATGGCTATTTTGCAGC 802
consensus_1927#1      ----------------------
                                            




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)