These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1927#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 802 fasta sequence [ACGACGGGGAGCGGGAGCGGGAGCGCGAGGGAGATGGGCTCGACGAACAGCCCGGTGGTGGTGGTGGTGCCGGACCCCGTGGTGGTGGGGGTGGGGCTCCACCACCCGCACCCGGCCGCCGCGCTGATCTCCCGCCGCGTCGCCATGGCGCGGGACTACGCCGCCGCCGCCGCCGTCCTCCGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCACGTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCGCGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTTGGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGAGAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGGTTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAATAGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGCAGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTCTTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCTGAAGAACGCAATACCAATAAGTAACTGAAGATTCCACATGAGCCATGCCATTGCAACCTGCTCGCCATGGCTATTTTGCAGC] [+] EMBL AK062836 [ACGACGGGGAGCGGGAGCGGGAGCGCGAGGGAGATGGGCTCGACGAACAGCCCGGTGGTGGTGGTGGTGCCGGACCCCGTGGTGGTGGGGGTGGGGCTCCACCACCCGCACCCGGCCGCCGCGCTGATCTCCCGCCGCGTCGCCATGGCGCGGGACTACGCCGCCGCCGCCGCCGTCCTCCGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCACGTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCGCGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTTGGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGAGAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGGTTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAATAGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGCAGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTCTTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCTGAAGAACGCAATACCAATAAGTAACTGAAGATTCCACATGAGCCATGCCATTGCAACCTGCTCGCCATGGCTATTTTGCAGC] consensusID : consensus_1927#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [CCGGCGCCGCCGCCGTCCTCCGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCACGTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCGCGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTTGGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGAGAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGGTTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAATAGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGCAGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTCTTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCTGAAGAACGCAATACCAATAAGTAACTGAAGATTCCACAAAAAAAAAAA] [+] EMBL BE039654 [CCGGCGCCGCCGCCGTCCTCCGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCACGTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCGCGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTTGGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGAGAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGGTTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAATAGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGCAGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTCTTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCTGAAGAACGCAATACCAATAAGTAACTGAAGATTCCACAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1927#0 ACGACGGGGAGCGGGAGCGGGAGCGCGAGGGAGATGGGCTCGACGAACAGCCCGGTGGTG 60 consensus_1927#1 ------------------------------------------------------------ consensus_1927#0 GTGGTGGTGCCGGACCCCGTGGTGGTGGGGGTGGGGCTCCACCACCCGCACCCGGCCGCC 120 consensus_1927#1 ------------------------------------------------------------ consensus_1927#0 GCGCTGATCTCCCGCCGCGTCGCCATGGCGCGGGACTACGCCGCCGCCGCCGCCGTCCTC 180 consensus_1927#1 ----------------------------------------CCGGCGCCGCCGCCGTCCTC 20 *** **************** consensus_1927#0 CGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCAC 240 consensus_1927#1 CGCCCGCCGTGGCTCCTCGACCTCCTCCCCTTCCTCATCGTCCTCCTCATCGCCGCCCAC 80 ************************************************************ consensus_1927#0 GTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCG 300 consensus_1927#1 GTCCTCGCCCTCGGCTACTGGATCTACAGGCTCGCCACCGACGGCTCAAGGCAGCCCGCG 140 ************************************************************ consensus_1927#0 CGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTT 360 consensus_1927#1 CGGAGCAAGAAGCACTAGCCGCCCCCGCCCCAGGATGTTTCCTGGTAATGTTTTCCATTT 200 ************************************************************ consensus_1927#0 GGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGA 420 consensus_1927#1 GGATCTGGCGTCCTCTGCTTGTTGATCTCCAAGGTTTCCAATGCGAAGTGATAGCGTGGA 260 ************************************************************ consensus_1927#0 GAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGG 480 consensus_1927#1 GAACCCATGAAAGGACTAGAAACGGAACCAGTCTTCCAGTGATTTTTGTTCAGATGTTGG 320 ************************************************************ consensus_1927#0 TTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAAT 540 consensus_1927#1 TTTCAAAAGTGACGTTAGCTGAATACCCCCGTGTGAAAAGAAGACCTTGTGATCATAAAT 380 ************************************************************ consensus_1927#0 AGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGC 600 consensus_1927#1 AGGTACTTAGTTGTTGAAAAGGTTTGTCATTAGTTGATCTTTCATGTAAAGACCAGTAGC 440 ************************************************************ consensus_1927#0 AGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTC 660 consensus_1927#1 AGGTAGACAGGTGTTGTCATGTCTATCTGATTGTGCGTGTACATCTTGAGCAACTTTTTC 500 ************************************************************ consensus_1927#0 TTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCT 720 consensus_1927#1 TTTGCTCGACTCAGATACAGGCGAAGCTTCAGGCTCCACCATGCTTCTTTCTATCTGTCT 560 ************************************************************ consensus_1927#0 GAAGAACGCAATACCAATAAGTAACTGAAGATTCCACATGAGCCATGCCATTGCAACCTG 780 consensus_1927#1 GAAGAACGCAATACCAATAAGTAACTGAAGATTCCACAAAAAAAAAAA------------ 608 ************************************** * * consensus_1927#0 CTCGCCATGGCTATTTTGCAGC 802 consensus_1927#1 ---------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||