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Oryza sativa
cluster # 1936 cluster # 1936       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1936#0 length = 1561 sequences # 2  

consensusID : consensus_1936#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1561
fasta sequence
                              [TCGGCCATTGCGCCATTCATGGTTGTCGTCATCGGAGGCATCTTCGCTTTCCTTGTCAAGGGTGACGAGCATGGAATTCCGATAGTCGGTAACCTGAATAAAGGGATCAATCCCCTGTCCATTGCGCAGCTAACGTTCCAGTCCAGGCACATGAAGACGGCAGTGAAAGCTGGTCTCTTGTCTGGGATCCTAGCACTGGCAGAAGGAATAGCCGTCGGCCGAAGCTTGGCGATGGTCAAGAACGAGCAGATCGACGGCAACAAGGAGATGATCGCGTTTGGTATCATGAACATCGCCGGTTCTTTCACCTCCTGCTACCTCACGACAGGGCCGTTCTCAAAGTCGGCGGTGAACTTCCACGCCGGGTGCAAGACGCCGATGTCGAACGTGGTGATGTCGGTGTGCATCATGCTGGTGCTGCTGTTCCTGGCACCCCTCTTCAAGTACACCCCGCTGGTGGCGCTCTCCTCCATCATCGTCGTCGCCATGATCGGGCTCGTCAAGGTCAAGGAGTTCTGCCACCTCTACAAGGTCGACAAGTTCGACTTCTGCATCTGCATGGTCGCCTTCCTCGGCGTCGTCTTCTTCACCATGGTCGCAGGCCCTCAGCGCATCCGTAGGCTTGTCAGTTGTCAGGGCGTTGCTGTACGTGGCCAGGCCTGCCACCTGCAAGCTCGGGAACATAGCAGGGAGCGAGACCTTCCGCGACGTGAAGCAATACCCCCAAGCGAAGAGCATCCCTGGCATCCTCGTCTTGCAGCTCGGCTCTCCCATCTACTTCGTCAATGCGGGTTACCTGCGAGAAAGGATTTTGAGATGGGTGGAAGATGAGGATAACCTGTGCAAGAGCGTCGGGCACGATCTGCAATACTTGGTTCTTGATCTTGGTGGTGTCACTTCTGTCGACAACTCTGGAGTTGGGATGCTACTAGAAGTACACAAGAGCCTCGAACGAAGAGGGATCACGATAGCTCTGACGAATCCGAGGCTAGAGGTAACAGAGAAGCTGGTGCTGTCTGGATACGTCAGGGACATCTTAGGGGATGAGTGGGTCTTCCTGACGGTCAAGGACGCCATCACGGCGTGTCGATACGCGCTGCAGATATCCAGAAATAAGGGAGAAGACGAAGTATAGGGAGCTCTTTCTTGCGTAGAGCTGTTTAGAAATTATAGGTGTAGACACTTGGGCAATGGGCAGGCAAGGCAAGCAGGACGAAATGCTCCACTATCAAAGGGTATGAGGAAGATTCAGAAAGTACCACGAGCTAGTAACAGTTTATTCAGTCGCATGGATTAAGTAGTACTTGCTAGATGCTTTGGATTGTTGGTCGATCTCTGCATGTTCTGAATTGTGGAGTATCATGGTAATTTCAGGTATTTGTTGATTAGGGGCAATGGGGAATATAGTGAGGAGGATGGAACCAGTGTTCGTGTATAGACTAGTTTATATTCTGGGTTTACAGAGAAGTTCATAGATTTGCATGTAACAAACCTTCAGGGTTGCATTGCTCAATTCAGGGTGAAAGGCTTGTTCACTACTTGAACTGCTAGAATAATAAAT]

[+] EMBL AK121195             [TCGGCCATTGCGCCATTCATGGTTGTCGTCATCGGAGGCATCTTCGCTTTCCTTGTCAAGGGTGACGAGCATGGAATTCCGATAGTCGGTAACCTGAATAAAGGGATCAATCCCCTGTCCATTGCGCAGCTAACGTTCCAGTCCAGGCACATGAAGACGGCAGTGAAAGCTGGTCTCTTGTCTGGGATCCTAGCACTGGCAGAAGGAATAGCCGTCGGCCGAAGCTTGGCGATGGTCAAGAACGAGCAGATCGACGGCAACAAGGAGATGATCGCGTTTGGTATCATGAACATCGCCGGTTCTTTCACCTCCTGCTACCTCACGACAGGGCCGTTCTCAAAGTCGGCGGTGAACTTCCACGCCGGGTGCAAGACGCCGATGTCGAACGTGGTGATGTCGGTGTGCATCATGCTGGTGCTGCTGTTCCTGGCACCCCTCTTCAAGTACACCCCGCTGGTGGCGCTCTCCTCCATCATCGTCGTCGCCATGATCGGGCTCGTCAAGGTCAAGGAGTTCTGCCACCTCTACAAGGTCGACAAGTTCGACTTCTGCATCTGCATGGTCGCCTTCCTCGGCGTCGTCTTCTTCACCATGGTCGCAGGCCCTCAGCGCATCCGTAGGCTTGTCAGTTGTCAGGGCGTTGCTGTACGTGGCCAGGCCTGCCACCTGCAAGCTCGGGAACATAGCAGGGAGCGAGACCTTCCGCGACGTGAAGCAATACCCCCAAGCGAAGAGCATCCCTGGCATCCTCGTCTTGCAGCTCGGCTCTCCCATCTACTTCGTCAATGCGGGTTACCTGCGAGAAAGGATTTTGAGATGGGTGGAAGATGAGGATAACCTGTGCAAGAGCGTCGGGCACGATCTGCAATACTTGGTTCTTGATCTTGGTGGTGTCACTTCTGTCGACAACTCTGGAGTTGGGATGCTACTAGAAGTACACAAGAGCCTCGAACGAAGAGGGATCACGATAGCTCTGACGAATCCGAGGCTAGAGGTAACAGAGAAGCTGGTGCTGTCTGGATACGTCAGGGACATCTTAGGGGATGAGTGGGTCTTCCTGACGGTCAAGGACGCCATCACGGCGTGTCGATACGCGCTGCAGATATCCAGAAATAAGGGAGAAGACGAAGTATAGGGAGCTCTTTCTTGCGTAGAGCTGTTTAGAAATTATAGGTGTAGACACTTGGGCAATGGGCAGGCAAGGCAAGCAGGACGAAATGCTCCACTATCAAAGGGTATGAGGAAGATTCAGAAAGTACCACGAGCTAGTAACAGTTTATTCAGTCGCATGGATTAAGTAGTACTTGCTAGATGCTTTGGATTGTTGGTCGATCTCTGCATGTTCTGAATTGTGGAGTATCATGGTAATTTCAGGTATTTGTTGATTAGGGGCAATGGGGAATATAGTGAGGAGGATGGAACCAGTGTTCGTGTATAGACTAGTTTATATTCTGGGTTTACAGAGAAGTTCATAGATTTGCATGTAACAAACCTTCAGGGTTGCATTGCTCAATTCAGGGTGAAAGGCTTGTTCACTACTTGAACTGCTAGAATAATAAAT]
[+] EMBL CF305007             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GCATCCGTAGGCTTGTCAGTTGTCAGGGCGTTGCTGTACGTGGCCAGGCCTGCCACCTGCAAGCTCGGGAACATAGCAGGGAGCGAGACCTTCCGCGACGTGAAGCAATACCCCCAAGCGAAGAGCATCCCTGGCATCCTCGTCTTGCAGCTCGGCTCTCCCATCTACTTCGTCAATGCGGGTTACCTGCGAGAAAGGATTTTGAGATGGGTGGAAGATGAGGATAACCTGTGCAAGAGCGTCGGGCACGATCTGCAATACTTGGTTCTTGATCTTGGTGGTGTCACTTCTGTCGACAACTCTGGAGTTGGGATGCTACTAGAAGTACACAAGAGCCTCGAACGAAGAGGGATCACGATAGCTCTGACGAATCCGAGGCTAGAGGTAACAGAGAAGCTGGTGCTGTCTGGATACGTCAGGGACATCTTAGGGGATGAGTGGGTCTTCCTGACGGTCAAGGACGCCATCACGGCGTGTCGATACGCGCTGCAGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]


>consensus_1936#0 TCGGCCATTGCGCCATTCATGGTTGTCGTCATCGGAGGCATCTTCGCTTTCCTTGTCAAG GGTGACGAGCATGGAATTCCGATAGTCGGTAACCTGAATAAAGGGATCAATCCCCTGTCC ATTGCGCAGCTAACGTTCCAGTCCAGGCACATGAAGACGGCAGTGAAAGCTGGTCTCTTG TCTGGGATCCTAGCACTGGCAGAAGGAATAGCCGTCGGCCGAAGCTTGGCGATGGTCAAG AACGAGCAGATCGACGGCAACAAGGAGATGATCGCGTTTGGTATCATGAACATCGCCGGT TCTTTCACCTCCTGCTACCTCACGACAGGGCCGTTCTCAAAGTCGGCGGTGAACTTCCAC GCCGGGTGCAAGACGCCGATGTCGAACGTGGTGATGTCGGTGTGCATCATGCTGGTGCTG CTGTTCCTGGCACCCCTCTTCAAGTACACCCCGCTGGTGGCGCTCTCCTCCATCATCGTC GTCGCCATGATCGGGCTCGTCAAGGTCAAGGAGTTCTGCCACCTCTACAAGGTCGACAAG TTCGACTTCTGCATCTGCATGGTCGCCTTCCTCGGCGTCGTCTTCTTCACCATGGTCGCA GGCCCTCAGCGCATCCGTAGGCTTGTCAGTTGTCAGGGCGTTGCTGTACGTGGCCAGGCC TGCCACCTGCAAGCTCGGGAACATAGCAGGGAGCGAGACCTTCCGCGACGTGAAGCAATA CCCCCAAGCGAAGAGCATCCCTGGCATCCTCGTCTTGCAGCTCGGCTCTCCCATCTACTT CGTCAATGCGGGTTACCTGCGAGAAAGGATTTTGAGATGGGTGGAAGATGAGGATAACCT GTGCAAGAGCGTCGGGCACGATCTGCAATACTTGGTTCTTGATCTTGGTGGTGTCACTTC TGTCGACAACTCTGGAGTTGGGATGCTACTAGAAGTACACAAGAGCCTCGAACGAAGAGG GATCACGATAGCTCTGACGAATCCGAGGCTAGAGGTAACAGAGAAGCTGGTGCTGTCTGG ATACGTCAGGGACATCTTAGGGGATGAGTGGGTCTTCCTGACGGTCAAGGACGCCATCAC GGCGTGTCGATACGCGCTGCAGATATCCAGAAATAAGGGAGAAGACGAAGTATAGGGAGC TCTTTCTTGCGTAGAGCTGTTTAGAAATTATAGGTGTAGACACTTGGGCAATGGGCAGGC AAGGCAAGCAGGACGAAATGCTCCACTATCAAAGGGTATGAGGAAGATTCAGAAAGTACC ACGAGCTAGTAACAGTTTATTCAGTCGCATGGATTAAGTAGTACTTGCTAGATGCTTTGG ATTGTTGGTCGATCTCTGCATGTTCTGAATTGTGGAGTATCATGGTAATTTCAGGTATTT GTTGATTAGGGGCAATGGGGAATATAGTGAGGAGGATGGAACCAGTGTTCGTGTATAGAC TAGTTTATATTCTGGGTTTACAGAGAAGTTCATAGATTTGCATGTAACAAACCTTCAGGG TTGCATTGCTCAATTCAGGGTGAAAGGCTTGTTCACTACTTGAACTGCTAGAATAATAAA T



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)