These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence [ATCATGACTCGTGTTAAATGCTCGAAATTACGTGGCAAAAAGCCTGATGAACTTCAAAAACAATTGGAAGAATTACGTCAAGAATTAAACACACTTCGTGTTGGTAAAGTCACTGGAAGTGGTGGTGCACAAAAATTAGGCAAAATTCGTAATGTACGAAAATCGATTGCACGTGTTTTAATTGTTATTAATCAAACAACAAAACAAAACTTACGTGCATTGTATCATGGTAAAAAATATAAACCAAAAGATTTACGACAACGTAAAACACGAGCTATTCGACGTTTACAAACACCGAAAGAAAAATCTATTCAATTGAAAAAACTTCAACGACGACNATGGGCGTTTCCACAACGTACATTCGCTGTTAAAGCTTAAAGAAGAAATTCGATTGTTTTGTAAGAAGAAAAAAGACGTAGAAATCATTTCGATGAATTTTTTTTTCTTGTATAAGATCAAGTTTAAAATAAAAAAATTANNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] [+] EMBL CA756320 [ATCATGACTCGTGTTAAATGCTCGAAATTACGTGGCAAAAAGCCTGATGAACTTCAAAAACAATTGGAAGAATTACGTCAAGAATTAAACACACTTCGTGTTGGTAAAGTCACTGGAAGTGGTGGTGCACAAAAATTAGGCAAAATTCGTAATGTACGAAAATCGATTGCACGTGTTTTAATTGTTATTAATCAAACAACAAAACAAAACTTACGTGCATTGTATCATGGTAAAAAATATAAACCAAAAGATTTACGACAACGTAAAACACGAGCTATTCGACGTTTACAAACACCGAAAGAAAAATCTATTCAATTGAAAAAACTTCAACGACGACNATGGGCGTTTCCACAACGTACATTCGCTGTTAAAGCTTAAAGAAGAAATTCGATTGTTTTGTAAGAAGAAAAAAGACGTAGAAATCATTTCGATGAATTTTTTTTTCTTGTATAAGATCAAGTTTAAAATAAAAAAATTANNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN] consensusID : consensus_194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence [ACTTTTTTTTTCATCGAAAAAAATGACACAAGTTAAATGTTCACAACTTCGTGGTAAAAAACCAGAGGAGATTTTAAAACAACTAAATGATTTACGTCAAGAATTGAACACATTACGTGTTGGTAAAGTAACTGGCAGTGGTGGTGCACAGAAATTAGGCAAAATTCGTAATGTACGTAAATCGATTGCACGTGTACTTATCGTTCGTAATCAAACGACCAAAGATAATTTAAGAAAATTATATCACGGANAAAAATATAAACCAAAAGATTTACGTCGACGTANAACACGTGCCATTCGTCGTTTATTAACACCAAAGAACAATCGGTTCAATTGAAAAAACTTCAACGACGACNATGGGCTTTTTCACAACGTACATTCGCTGTTAAAGCTTAAGTTTACAGACCAGAAAACATGAAAAAAAAAGATCCTAAGGAAAAATCATATGTCTCTTGGTGGCATTCTTGGTCCGGTGTGGTGGTTTTTTTTTATTTTGGAAATATTCGTTGGTTAAGAATTGGAACCGATTAAATAAGAAGAAAATTTTTCCCCAGAACATATCAAATGAAAGATACAGTAAC] [+] EMBL CA755741 [ACTTTTTTTTTCATCGAAAAAAATGACACAAGTTAAATGTTCACAACTTCGTGGTAAAAAACCAGAGGAGATTTTAAAACAACTAAATGATTTACGTCAAGAATTGAACACATTACGTGTTGGTAAAGTAACTGGCAGTGGTGGTGCACAGAAATTAGGCAAAATTCGTAATGTACGTAAATCGATTGCACGTGTACTTATCGTTCGTAATCAAACGACCAAAGATAATTTAAGAAAATTATATCACGGANAAAAATATAAACCAAAAGATTTACGTCGACGTANAACACGTGCCATTCGTCGTTTATTAACACCAAAGAACAATCGGTTCAATTGAAAAAACTTCAACGACGACNATGGGCTTTTTCACAACGTACATTCGCTGTTAAAGCTTAAGTTTACAGACCAGAAAACATGAAAAAAAAAGATCCTAAGGAAAAATCATATGTCTCTTGGTGGCATTCTTGGTCCGGTGTGGTGGTTTTTTTTTATTTTGGAAATATTCGTTGGTTAAGAATTGGAACCGATTAAATAAGAAGAAAATTTTTCCCCAGAACATATCAAATGAAAGATACAGTAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_194#0 -------------------ATCATGACTCGTGTTAAATGCTCGAAATTACGTGGCAAAAA 41 consensus_194#1 ACTTTTTTTTTCATCGAAAAAAATGACACAAGTTAAATGTTCACAACTTCGTGGTAAAAA 60 * ***** * ******** ** ** * ***** ***** consensus_194#0 GCCTGATGAACTTCAAAAACAATTGGAAGAATTACGTCAAGAATTAAACACACTTCGTGT 101 consensus_194#1 ACCAGAGGAGATTTTAAAACAACTAAATGATTTACGTCAAGAATTGAACACATTACGTGT 120 ** ** ** ** ******* * * ** ************** ****** * ***** consensus_194#0 TGGTAAAGTCACTGGAAGTGGTGGTGCACAAAAATTAGGCAAAATTCGTAATGTACGAAA 161 consensus_194#1 TGGTAAAGTAACTGGCAGTGGTGGTGCACAGAAATTAGGCAAAATTCGTAATGTACGTAA 180 ********* ***** ************** ************************** ** consensus_194#0 ATCGATTGCACGTGTTTTAATTGTTATTAATCAAACAACAAAACAAAACTTACGTGCATT 221 consensus_194#1 ATCGATTGCACGTGTACTTATCGTTCGTAATCAAACGACCAAAGATAATTTAAGAAAATT 240 *************** * ** *** ********* ** *** * ** *** * *** consensus_194#0 GTATCATGGTAAAAAATATAAACCAAAAGATTTACGACAACGTAAAACACGAGCTATTCG 281 consensus_194#1 ATATCACGGANAAAAATATAAACCAAAAGATTTACGTCGACGTANAACACGTGCCATTCG 300 ***** ** ************************* * ***** ****** ** ***** consensus_194#0 ACGTTTACAAACACCGAAAGAAAAATCTATTCAATTGAAAAAACTTCAACGACGACNATG 341 consensus_194#1 TCGTTTATTAACACC-AAAGAACAATCGGTTCAATTGAAAAAACTTCAACGACGACNATG 359 ****** ****** ****** **** ******************************* consensus_194#0 GGCGTTTCCACAACGTACATTCGCTGTTAAAGCTTAAAGAAGAAATTCGATTGTTTTGTA 401 consensus_194#1 GGCTTTTTCACAACGTACATTCGCTGTTAAAGCTTAA---------------GTTTACAG 404 *** *** ***************************** **** consensus_194#0 AGAAGAAAAAAGACGTAGAAATCATTTCGATGAATTTTTTTTTCTTGTATAAGATCAAGT 461 consensus_194#1 ACCAGAAAACATGAAAAAAAAAGATCCTAAGGAA-----------------AAATCATAT 447 * ****** * * *** ** * *** * **** * consensus_194#0 TTAAAATAAAAAAATTANNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 521 consensus_194#1 GTCTCTTGGTGGCATTCTTGGTCCGGTGTGGTGGTTTTTTTTTATTTTGGAAATATTCGT 507 * * *** * consensus_194#0 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 581 consensus_194#1 TGGTTAAGAATTGGAACCGATTAAATAAGAAGAAAATTTTTCCCCAGAACATATCAAATG 567 consensus_194#0 NNNNNNNNNNNNNNNN 597 consensus_194#1 AAAGATACAGTAAC-- 581 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||