cluster # 1940

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Oryza sativa
cluster # 1940 cluster # 1940 Sequences # 2 consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1940#0 length = 610 sequences # 2

consensusID : consensus_1940#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 610
fasta sequence

                              [CTTTTCGTTTGTGTCTATTCAGCACCAGCATTCAATTCGGAATTAAATGCTCACTGGACACTTTTCAAACAACAATTCGGAAAACAATATTCAACAGCCGAAGAAGTTGCTCGTCGTTTAGCTTGGGAAGCCAATGTTGACATCATTCGAAAACATAATCTTGAACACGACCTCGGTTTACACACATACACTCTCGGTTTAAATGACTATGCTGACTTAACCAATGAAGAATTCAACAAAGTCATGAATGGTTTACGAGTTGATGCTCGAAATCAAACTCGTGATGCTAACCGACGAACATATGTTGCTCCAGCTAATATTCAAGCACCAGATGCTGTCGATTGGCGAACAAAAGGTTACGTTACACCAATCAAAGATCAAGGTCAATGTGGATCATGTTGGGCTTTCTCATCGACTGGCTCACTCGAAGGACAACACTTTGCTAAAACCGGTCAACTCGTTTCACTCTCCGAACAAAACTTAGTTGATTGCTCACGAAAACAAGGTAACATGGGTTGCAATGGTGGTTTGATGGATCAAGCTTTCACATACATCAAAGAAAACAATGGTATCGATACCGAAAAATCATATCCATATGAAGCTGCTGATC]

[+] EMBL CA756051             [CTTTTCGTTTGTGTCTATTCAGCACCAGCATTCAATTCGGAATTAAATGCTCACTGGACACTTTTCAAACAACAATTCGGAAAACAATATTCAACAGCCGAAGAAGTTGCTCGTCGTTTAGCTTGGGAAGCCAATGTTGACATCATTCGAAAACATAATCTTGAACACGACCTCGGTTTACACACATACACTCTCGGTTTAAATGACTATGCTGACTTAACCAATGAAGAATTCAACAAAGTCATGAATGGTTTACGAGTTGATGCTCGAAATCAAACTCGTGATGCTAACCGACGAACATATGTTGCTCCAGCTAATATTCAAGCACCAGATGCTGTCGATTGGCGAACAAAAGGTTACGTTACACCAATCAAAGATCAAGGTCAATGTGGATCATGTTGGGCTTTCTCATCGACTGGCTCACTCGAAGGACAACACTTTGCTAAAACCGGTCAACTCGTTTCACTCTCCGAACAAAACTTAGTTGATTGCTCACGAAAACAAGGTAACATGGGTTGCAATGGTGGTTTGATGGATCAAGCTTTCACATACATCAAAGAAAACAATGGTATCGATACCGAAAAATCATATCCATATGAAGCTGCTGATC]
[+] EMBL CA756071             [                                                                                              CAGCCGAAGAAGTTGCTCGTCGTTTAGCTTGGGAAGCCAATGTTGACATCATTCGAAAACATAATCTTGAACACGATCTCGGTTTACACACATACACTCTCGGTTTAAATGACTATGCTGACTTAACCAATGAAGAATTCAACAAAGTCATGAACGGTTTACGAGTTGATGCTCGAAATCAAACTCGTGCTGCTAACCGACGAACATATGTTGCTCCAGCTAATGTTCAAGCACCA                                                                                                                                                                                                                                                                                        ]




>consensus_1940#0
CTTTTCGTTTGTGTCTATTCAGCACCAGCATTCAATTCGGAATTAAATGCTCACTGGACA
CTTTTCAAACAACAATTCGGAAAACAATATTCAACAGCCGAAGAAGTTGCTCGTCGTTTA
GCTTGGGAAGCCAATGTTGACATCATTCGAAAACATAATCTTGAACACGACCTCGGTTTA
CACACATACACTCTCGGTTTAAATGACTATGCTGACTTAACCAATGAAGAATTCAACAAA
GTCATGAATGGTTTACGAGTTGATGCTCGAAATCAAACTCGTGATGCTAACCGACGAACA
TATGTTGCTCCAGCTAATATTCAAGCACCAGATGCTGTCGATTGGCGAACAAAAGGTTAC
GTTACACCAATCAAAGATCAAGGTCAATGTGGATCATGTTGGGCTTTCTCATCGACTGGC
TCACTCGAAGGACAACACTTTGCTAAAACCGGTCAACTCGTTTCACTCTCCGAACAAAAC
TTAGTTGATTGCTCACGAAAACAAGGTAACATGGGTTGCAATGGTGGTTTGATGGATCAA
GCTTTCACATACATCAAAGAAAACAATGGTATCGATACCGAAAAATCATATCCATATGAA
GCTGCTGATC

clustalw multiple alignements is not computed in this case