These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1942#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 570 fasta sequence [CTTTTTTTTTTGTCTATTAAAGTGAACCCCGAGTTGGCGATCAAATTGGTTTCTGTTATATGAAATTTTGTTTTTTTCTCTATTTCTGTATTTAGCAAAGTGTGGTGTACGTGTTCGCCATTTACTTGGTTTTCCTGGTGCTATGTCTATTTGTGACAGGAGTGAGGCGATGGATCATGCGCATGCGCTCCAGAAATATGGCAGTAAATTTGATTTTTTTTATGAGCAAAGTCCTCCTCCCATGAATAACGTCGTAAAGAGTTCATTCTATTTCGTTGAGAGGCAAGATTAATTATGTTCTGCTGGCTGCGCAGTACCTAGCTGTGATGCACCCGGCACGGTAGAAAAGCTTGTGCCGATATGCCAGGAAGAACATATAGATTCCAAGCAAATGAATGAATATGTACCCAAATAATAAAATCTTGCAATTGTTCCAACGTATGCAGCAGGGTCTTTTTTATTTTGTCATTCAGGGTGTACGGGAGTATGATCAGTGGAGTATTTAATTTGTAACAGCTGCTTGTTGCATGATCAGTATAATAAAATCGAGTTGATTTCCTTGCTAAAAAA] [+] EMBL C99014 [CTTTTTTTTTTGTCTATTAAAGTGAACCCCGAGTTGGCGATCAAATTGGTTTCTGTTATATGAAATTTTGTTTTTTTCTCTATTTCTGTATTTAGCAAAGTGTGGTGTACGTGTTCGCCATTTACTTGGTTTTCCTGGTGCTATGTCTATTTGTGACAGGAGTGAGGCGATGGATCATGCGCATGCGCTCCAGAAATATGGCAGTAAATTTGATTTTTTTTATGAGCAAAGTCCTCCTCCCATGAATAACGTCGTAAAGAGTTCATTCTATTTCGTTGAGAGGCAAGATTAATTATGTTCTGCTGGCTGCGCAGTACCTAGCTGTGATGCACCCGGCACGGTAGAAAAGCTTGTGCCGATATGCCAGGAAGAACATATAGATTCCAAGCAAATGAATGAATATGTACCCAAATAATAAAATCTTGCAATTGTTCCAACGTATGCAGCAGGGTCTTTTTTATTTTGTCATTCAGGGTGTACGGGAGTATGATCAGTGGAGTATTTAATTTGTAACAGCTGCTTGTTGCATGATCAGTATAATAAAATCGAGTTGATTTCCTTGCTAAAAAA] consensusID : consensus_1942#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 550 fasta sequence [TTGCACGGCGGCAGAACATTGCTGGTGAGCAGAGCTGCCCTGCAGAAGCCGGTCGGAGATGGCAGAAGATCGTCAGCGGAGACGCTGACGGGCAGAAGATCGATCGTCAGTGGGAATCGGCGGCGGAAGCGGGCAGAAGATCGTTATTGGGCGACATTGGAGGAGACGACCGAAGATCGTCAGCGGGGAGTGCTCGATCTTGAGCAGAAACCGATGGTGGGAGACGACAGAAGATTGATCAGTAGCTGACGACGACGGCACGACGCGATATGGCAGAAGGAGTGAGGCGATGGATCATGCGCATGCGCTCCAGAAATATGGCAGTAAATTTGATTTTTTTTATGAGCAAAGTCCTCCTCCCATGAATAACGTCGTAAAGAGTTCATTCTATTTCGTTGAGAGGCAAGATTAATTATGTTCTGCTGGCTGCGCAGTACCTAGCTGTGATGCACCCGGCACGGTAGAAAAGCTTGTGCCGATATGCCAGGAAGAACATATAGATTCCAAGCAAATGAATGAATATGTACCCAAATAATAAAATCTTGCAATT] [+] EMBL AK121216 [TTGCACGGCGGCAGAACATTGCTGGTGAGCAGAGCTGCCCTGCAGAAGCCGGTCGGAGATGGCAGAAGATCGTCAGCGGAGACGCTGACGGGCAGAAGATCGATCGTCAGTGGGAATCGGCGGCGGAAGCGGGCAGAAGATCGTTATTGGGCGACATTGGAGGAGACGACCGAAGATCGTCAGCGGGGAGTGCTCGATCTTGAGCAGAAACCGATGGTGGGAGACGACAGAAGATTGATCAGTAGCTGACGACGACGGCACGACGCGATATGGCAGAAGGAGTGAGGCGATGGATCATGCGCATGCGCTCCAGAAATATGGCAGTAAATTTGATTTTTTTTATGAGCAAAGTCCTCCTCCCATGAATAACGTCGTAAAGAGTTCATTCTATTTCGTTGAGAGGCAAGATTAATTATGTTCTGCTGGCTGCGCAGTACCTAGCTGTGATGCACCCGGCACGGTAGAAAAGCTTGTGCCGATATGCCAGGAAGAACATATAGATTCCAAGCAAATGAATGAATATGTACCCAAATAATAAAATCTTGCAATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1942#0 ------------------------------------------------------------ consensus_1942#1 TTGCACGGCGGCAGAACATTGCTGGTGAGCAGAGCTGCCCTGCAGAAGCCGGTCGGAGAT 60 consensus_1942#0 ----------------------------------------CTTTTTTTTTTGTCTATTAA 20 consensus_1942#1 GGCAGAAGATCGTCAGCGGAGACGCTGACGGGCAGAAGATCGATCGTCAGTGGGAATCGG 120 * * * ** ** consensus_1942#0 AGTGAACCCCGAGTTGGCGATCAA-ATTGGTTTCTGTTATATGAAATTTTGTTTTTTTCT 79 consensus_1942#1 CGGCGGAAGCGGGCAGAAGATCGTTATTGGGCGACATTGGAGGAGACGACCGAAGATCGT 180 * ** * * **** ***** ** * ** * * * consensus_1942#0 CTAT--------TTCTGTATTTAGCAAAGTGTGGTG-----------TACGTGTTCGCCA 120 consensus_1942#1 CAGCGGGGAGTGCTCGATCTTGAGCAGAAACCGATGGTGGGAGACGACAGAAGATTGATC 240 * ** * ** **** * * ** * * * * consensus_1942#0 TTTACTTGGTTTTCCTGGTGCTATGTCTATTTGTGACAGGAGTGAGGCGATGGATCATGC 180 consensus_1942#1 AGTAGCTGACGACGACGGCACGACGCGATATGGCAGAAGGAGTGAGGCGATGGATCATGC 300 ** ** ** * * * * * *********************** consensus_1942#0 GCATGCGCTCCAGAAATATGGCAGTAAATTTGATTTTTTTTATGAGCAAAGTCCTCCTCC 240 consensus_1942#1 GCATGCGCTCCAGAAATATGGCAGTAAATTTGATTTTTTTTATGAGCAAAGTCCTCCTCC 360 ************************************************************ consensus_1942#0 CATGAATAACGTCGTAAAGAGTTCATTCTATTTCGTTGAGAGGCAAGATTAATTATGTTC 300 consensus_1942#1 CATGAATAACGTCGTAAAGAGTTCATTCTATTTCGTTGAGAGGCAAGATTAATTATGTTC 420 ************************************************************ consensus_1942#0 TGCTGGCTGCGCAGTACCTAGCTGTGATGCACCCGGCACGGTAGAAAAGCTTGTGCCGAT 360 consensus_1942#1 TGCTGGCTGCGCAGTACCTAGCTGTGATGCACCCGGCACGGTAGAAAAGCTTGTGCCGAT 480 ************************************************************ consensus_1942#0 ATGCCAGGAAGAACATATAGATTCCAAGCAAATGAATGAATATGTACCCAAATAATAAAA 420 consensus_1942#1 ATGCCAGGAAGAACATATAGATTCCAAGCAAATGAATGAATATGTACCCAAATAATAAAA 540 ************************************************************ consensus_1942#0 TCTTGCAATTGTTCCAACGTATGCAGCAGGGTCTTTTTTATTTTGTCATTCAGGGTGTAC 480 consensus_1942#1 TCTTGCAATT-------------------------------------------------- 550 ********** consensus_1942#0 GGGAGTATGATCAGTGGAGTATTTAATTTGTAACAGCTGCTTGTTGCATGATCAGTATAA 540 consensus_1942#1 ------------------------------------------------------------ consensus_1942#0 TAAAATCGAGTTGATTTCCTTGCTAAAAAA 570 consensus_1942#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||