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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1947#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1034 fasta sequence
[GCTTTATATCAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTGGTGTTGACCGGCACTGGGAGTCGGGTGGGCCAAGATGTTAGAGCGTGACCGAGACGGAGAGGAGAGGCAAGAATCGACACGAGAGGAGCGTAAGACCAGCGACGCACCCGGCGAAGCGTGGCGGACGCGGCCGAGGGAGCAGAGAACACCGACCAGCACCACCGAGCCCCAGAGCAGCGAGCACCCCGCCCCGCGCGCCAGCGGCGAGGACCAGACGGAGAGAGACCAGGGGCGCCCGCCCACGGAGGGGACAAACAGAGGCAGCGACGCGCTACAACACCACGACACCCCGCGGGAGCGGACCGAAAGGCCACACGAAAAAGAACACGCCCGAGAGACCGAGAGAGAGCCGCGAGGGGAACGGCACCGAAGGGGCGCAGTCAAAGGCGGGACCGCACAAAGCAACCTACGGCCCCGAACATATCACGCAAAAAGCACGGAACACCGACCGACCAACGACACCGAAGGAGACGCGCAGGCACACAACCGACGAACGGGGGCCCAACACGCGAGACGAAAATGGAGGAGGGCCAAGGCAACGGGACGAAAAGAGCAACAGCCGCCAGCACGCCACAGCCAGGGGGGTGGAAATAGCGGCGAGAGCCCAACAACGAGGCGCCAAGGCGGCACCGCCCCAGAAACAGCCCACCAAGAGGCTCCACCCCCCCCCCCTCAAAAACAGCCTGCGAGCACGCGAGCATCCACGACCCCACGGCCCGCACGCGACAAAGACTCGACAAACCTTCAAAGAGGCGCGAGCGGCACCGTCCCCCCGAAGAGAAGCAGCGGCGAACCGGACGGAATAAAAAGAACGCGCAGCGCGGGGCAGGAAAAGAGCGTACAGAGAGCCGGACCGGCCGAGAGCATCGCTTCGCCCCCGAGAAGACGAGAGGACCAGCAAGCCGCACAAGAGCAGACGCACCAAAG]
[+] EMBL BE039666 [GCTTTATATCAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTGGTGTTGACCGGCACTGGGAGTCGGGTGGGCCAAGATGTTAGAGCGTGACCGAGACGGAGAGGAGAGGCAAGAATCGACACGAGAGGAGCGTAAGACCAGCGACGCACCCGGCGAAGCGTGGCGGACGCGGCCGAGGGAGCAGAGAACACCGACCAGCACCACCGAGCCCCAGAGCAGCGAGCACCCCGCCCCGCGCGCCAGCGGCGAGGACCAGACGGAGAGAGACCAGGGGCGCCCGCCCACGGAGGGGACAAACAGAGGCAGCGACGCGCTACAACACCACGACACCCCGCGGGAGCGGACCGAAAGGCCACACGAAAAAGAACACGCCCGAGAGACCGAGAGAGAGCCGCGAGGGGAACGGCACCGAAGGGGCGCAGTCAAAGGCGGGACCGCACAAAGCAACCTACGGCCCCGAACATATCACGCAAAAAGCACGGAACACCGACCGACCAACGACACCGAAGGAGACGCGCAGGCACACAACCGACGAACGGGGGCCCAACACGCGAGACGAAAATGGAGGAGGGCCAAGGCAACGGGACGAAAAGAGCAACAGCCGCCAGCACGCCACAGCCAGGGGGGTGGAAATAGCGGCGAGAGCCCAACAACGAGGCGCCAAGGCGGCACCGCCCCAGAAACAGCCCACCAAGAGGCTCCACCCCCCCCCCCTCAAAAACAGCCTGCGAGCACGCGAGCATCCACGACCCCACGGCCCGCACGCGACAAAGACTCGACAAACCTTCAAAGAGGCGCGAGCGGCACCGTCCCCCCGAAGAGAAGCAGCGGCGAACCGGACGGAATAAAAAGAACGCGCAGCGCGGGGCAGGAAAAGAGCGTACAGAGAGCCGGACCGGCCGAGAGCATCGCTTCGCCCCCGAGAAGACGAGAGGACCAGCAAGCCGCACAAGAGCAGACGCACCAAAG]
consensusID : consensus_1947#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 857 fasta sequence
[TTGGCTCTCGTTACTTAGTGTCTGCTCTCTTAGCCGTACCTTAAACCTTCACGCGCTTTCCCCTATTCCACGCTGCCCTCACGACTCGTGTGCGCGACTCTATATTTCCCCGCCTGCGGTTTAGTTCGGGTTATATCTCCTCCTCCCTCGTCCTTCCGTTCGGGGTTCTCTTAACCCTCGCTCTAGCTTTCGTCTCGGTCAGCTTTACCCCCTCACTAATTCTTTAGTCCGACTTTAATTTTAGCCCTTACTACAGCTTTAGTGTGGGTTCTTATTCCCCCTCACAAAAGCTTTAGTGAGCGTTACTCTACCCCTCGCTCACGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGATGGTTTATATTACCCCTCACTCAAGCTTTAGTGAGGGTTAATATTACCCCTCACTACAGCTTTAGTGAGGGTTAATATTAACCCTCACTACAGCTTTAGTGCGGGTTAATATTCACCCTCACTACAGCTTTAGTGAGGGTTAATATTACCCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCCTACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTCAACGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAACATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCTCACTNCACGCTTTAGTGAGTGTTAATATTAAC]
[+] EMBL CA757631 [TTGGCTCTCGTTACTTAGTGTCTGCTCTCTTAGCCGTACCTTAAACCTTCACGCGCTTTCCCCTATTCCACGCTGCCCTCACGACTCGTGTGCGCGACTCTATATTTCCCCGCCTGCGGTTTAGTTCGGGTTATATCTCCTCCTCCCTCGTCCTTCCGTTCGGGGTTCTCTTAACCCTCGCTCTAGCTTTCGTCTCGGTCAGCTTTACCCCCTCACTAATTCTTTAGTCCGACTTTAATTTTAGCCCTTACTACAGCTTTAGTGTGGGTTCTTATTCCCCCTCACAAAAGCTTTAGTGAGCGTTACTCTACCCCTCGCTCACGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGATGGTTTATATTACCCCTCACTCAAGCTTTAGTGAGGGTTAATATTACCCCTCACTACAGCTTTAGTGAGGGTTAATATTAACCCTCACTACAGCTTTAGTGCGGGTTAATATTCACCCTCACTACAGCTTTAGTGAGGGTTAATATTACCCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCCTACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTCAACGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAACATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCTCACTNCACGCTTTAGTGAGTGTTAATATTAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_1947#0 GCTTTATATCAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCT 60
consensus_1947#1 ------------------------------------------TTGGCTCTCGTTA----C 14
** * *** **
consensus_1947#0 TTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTT-----GGTGTTGAC 115
consensus_1947#1 TTAGTGTCTGCTC-TCTTAGCCGTACCTTAAACCTTCACGCGCTTTCCCCTATTCCACGC 73
****** * * * *** ** * ** ** * ** * * ** * *
consensus_1947#0 CGGCACTGGGAGTCGGGTGGGCCAAGATGTTAGAGCGTGACCGAGACGGAGAGGAGAGGC 175
consensus_1947#1 TGCCCTCACGACTCGTGTGCGC---GACTCTATATTTCCCCGCCTGCGGTTTAGTTCGGG 130
* * ** *** *** ** ** ** * * *** * **
consensus_1947#0 AAGAATCGACACGAGAGGAGCGTAAGACCAGCGACGCACCCGGCGAAGCGTGGCGGACGC 235
consensus_1947#1 TTATATCTCCTCCT-------------CCCTCGTCCTTCCGTTCGGGGTTCTCTTAACCC 177
*** * * ** ** * ** ** * ** *
consensus_1947#0 GGCCGAGGGAGCAGAGAACACCGACCAGCACCACCGAGCCCCAGAGCAGCGAGCACCCCG 295
consensus_1947#1 --TCGCTCTAGCTTTCGTC-TCGGTCAGCTTTACC---CCCTCACTAATTCTTTAGTCCG 231
** *** * ** **** *** *** * * ***
consensus_1947#0 CCCCGCGCGCCAGCGGCGAGGACCAGACGGAGAGAGACCAGGGGCGCCCGCCCACGGAGG 355
consensus_1947#1 ACTTTAATTTTAGCCCTTACTAC-AGCTTTAGTGTGGGTTCTTATTCCCCCTCACAAAAG 290
* *** * ** ** ** * * *** * *** * *
consensus_1947#0 GGACAAACAGAGGCAGCGACGCGCTACAACACCACGACACCCCGCGGGAGCGGACCGAAA 415
consensus_1947#1 C------TTTAGTGAGCGTTACTCTACCCCTCGCTCACGCTTTAGTGAGGGTTAATATTA 344
** **** * **** * * ** * * * * *
consensus_1947#0 GGCCACACGAAAAAGAACACGCCCGAGAGACCGAGAGAGAGCCGCGAGGGGAACGGCACC 475
consensus_1947#1 ACCCTCACTAAAG------CTTTAGTGATGGTTTATATTACCCCTCACTCAAGCTTTAGT 398
** *** *** * * ** * ** * * * *
consensus_1947#0 GAAGGGGCGCAGTCAAAGGCGGGACCGCACAAAGCAACCTACGGCCCCGAACATATCACG 535
consensus_1947#1 GAGGGTTAATATTACCCCTCACTACAGCTTTAGTGAGGGTTAATATTAACCCTCACTACA 458
** ** * * * ** ** * * * * * **
consensus_1947#0 CAAAAAGCACGGAACACCGACCGACCA-ACGACACCGAAGGAGACGCGCAGGCACACAAC 594
consensus_1947#1 GCTTTAGTGCGGGTTAATATTCACCCTCACTACAGCTTTAGTGAGGGTTA---ATATTAC 515
** *** * * ** ** *** * * ** * * * * **
consensus_1947#0 CGACGAACGGGGGCCCAACACGCGAGACGAAAATGGAGGAGGGCCAAGGCAACGGGACGA 654
consensus_1947#1 CCCTCACTAAAGCTTTAGTG---AGGGTTAATATTAACCCCTACTAAAGCTTTAGT---- 568
* * * * * ** ** * * ** ** *
consensus_1947#0 AAAGAGCAACAGCCGCCAGCACGCCACAGCCAGGGGGGTGGAAATAGCGGCGAGAGCCCA 714
consensus_1947#1 GAGGGTTAATATTAACCCTCACTCAACGCTTTAGTGAGGGTTAATATTAACC----CTCA 624
* * ** * ** *** * ** * * * * **** * * **
consensus_1947#0 ACAACGAGGCGCCAAGG--CGGCACCGCCCCAGAAACAGCCCACCAAGAGGCTCCACCCC 772
consensus_1947#1 CTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATT 684
** * *** * *** * * * **** * *
consensus_1947#0 CCCCCCCTCAAAAACAGCCTGCGAGCACGCGAGCATCCACGACC-CCACGGCCCGCACGC 831
consensus_1947#1 AACCCTCACTAA---AGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGA 741
*** * * ** *** * * * * * ** ** * * * ** *
consensus_1947#0 GACAAAGACTCGACAAACCTTCAAAGAGGCGCGAGCGGCACCGTCCCCCCGAAGAGAAGC 891
consensus_1947#1 GGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAACATTAACCCTCACTAAAGC 801
* * * ** * * ** * *** * * * * *** * ****
consensus_1947#0 AGCGGCGAACCGGACGGAATAAAAAGAACGCGCAGCGCGGGGCAGGAAAAGAGCGTACAG 951
consensus_1947#1 TTTAGTGAG--GGTTAATATTAAC----CTCACTNCACGCTTTAGTGAGTGTTAATATTA 855
* ** ** ** ** * * * * ** ** * * **
consensus_1947#0 AGAGCCGGACCGGCCGAGAGCATCGCTTCGCCCCCGAGAAGACGAGAGGACCAGCAAGCC 1011
consensus_1947#1 AC---------------------------------------------------------- 857
*
consensus_1947#0 GCACAAGAGCAGACGCACCAAAG 1034
consensus_1947#1 -----------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||