These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1947#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1034 fasta sequence [GCTTTATATCAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTGGTGTTGACCGGCACTGGGAGTCGGGTGGGCCAAGATGTTAGAGCGTGACCGAGACGGAGAGGAGAGGCAAGAATCGACACGAGAGGAGCGTAAGACCAGCGACGCACCCGGCGAAGCGTGGCGGACGCGGCCGAGGGAGCAGAGAACACCGACCAGCACCACCGAGCCCCAGAGCAGCGAGCACCCCGCCCCGCGCGCCAGCGGCGAGGACCAGACGGAGAGAGACCAGGGGCGCCCGCCCACGGAGGGGACAAACAGAGGCAGCGACGCGCTACAACACCACGACACCCCGCGGGAGCGGACCGAAAGGCCACACGAAAAAGAACACGCCCGAGAGACCGAGAGAGAGCCGCGAGGGGAACGGCACCGAAGGGGCGCAGTCAAAGGCGGGACCGCACAAAGCAACCTACGGCCCCGAACATATCACGCAAAAAGCACGGAACACCGACCGACCAACGACACCGAAGGAGACGCGCAGGCACACAACCGACGAACGGGGGCCCAACACGCGAGACGAAAATGGAGGAGGGCCAAGGCAACGGGACGAAAAGAGCAACAGCCGCCAGCACGCCACAGCCAGGGGGGTGGAAATAGCGGCGAGAGCCCAACAACGAGGCGCCAAGGCGGCACCGCCCCAGAAACAGCCCACCAAGAGGCTCCACCCCCCCCCCCTCAAAAACAGCCTGCGAGCACGCGAGCATCCACGACCCCACGGCCCGCACGCGACAAAGACTCGACAAACCTTCAAAGAGGCGCGAGCGGCACCGTCCCCCCGAAGAGAAGCAGCGGCGAACCGGACGGAATAAAAAGAACGCGCAGCGCGGGGCAGGAAAAGAGCGTACAGAGAGCCGGACCGGCCGAGAGCATCGCTTCGCCCCCGAGAAGACGAGAGGACCAGCAAGCCGCACAAGAGCAGACGCACCAAAG] [+] EMBL BE039666 [GCTTTATATCAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTGGTGTTGACCGGCACTGGGAGTCGGGTGGGCCAAGATGTTAGAGCGTGACCGAGACGGAGAGGAGAGGCAAGAATCGACACGAGAGGAGCGTAAGACCAGCGACGCACCCGGCGAAGCGTGGCGGACGCGGCCGAGGGAGCAGAGAACACCGACCAGCACCACCGAGCCCCAGAGCAGCGAGCACCCCGCCCCGCGCGCCAGCGGCGAGGACCAGACGGAGAGAGACCAGGGGCGCCCGCCCACGGAGGGGACAAACAGAGGCAGCGACGCGCTACAACACCACGACACCCCGCGGGAGCGGACCGAAAGGCCACACGAAAAAGAACACGCCCGAGAGACCGAGAGAGAGCCGCGAGGGGAACGGCACCGAAGGGGCGCAGTCAAAGGCGGGACCGCACAAAGCAACCTACGGCCCCGAACATATCACGCAAAAAGCACGGAACACCGACCGACCAACGACACCGAAGGAGACGCGCAGGCACACAACCGACGAACGGGGGCCCAACACGCGAGACGAAAATGGAGGAGGGCCAAGGCAACGGGACGAAAAGAGCAACAGCCGCCAGCACGCCACAGCCAGGGGGGTGGAAATAGCGGCGAGAGCCCAACAACGAGGCGCCAAGGCGGCACCGCCCCAGAAACAGCCCACCAAGAGGCTCCACCCCCCCCCCCTCAAAAACAGCCTGCGAGCACGCGAGCATCCACGACCCCACGGCCCGCACGCGACAAAGACTCGACAAACCTTCAAAGAGGCGCGAGCGGCACCGTCCCCCCGAAGAGAAGCAGCGGCGAACCGGACGGAATAAAAAGAACGCGCAGCGCGGGGCAGGAAAAGAGCGTACAGAGAGCCGGACCGGCCGAGAGCATCGCTTCGCCCCCGAGAAGACGAGAGGACCAGCAAGCCGCACAAGAGCAGACGCACCAAAG] consensusID : consensus_1947#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 857 fasta sequence [TTGGCTCTCGTTACTTAGTGTCTGCTCTCTTAGCCGTACCTTAAACCTTCACGCGCTTTCCCCTATTCCACGCTGCCCTCACGACTCGTGTGCGCGACTCTATATTTCCCCGCCTGCGGTTTAGTTCGGGTTATATCTCCTCCTCCCTCGTCCTTCCGTTCGGGGTTCTCTTAACCCTCGCTCTAGCTTTCGTCTCGGTCAGCTTTACCCCCTCACTAATTCTTTAGTCCGACTTTAATTTTAGCCCTTACTACAGCTTTAGTGTGGGTTCTTATTCCCCCTCACAAAAGCTTTAGTGAGCGTTACTCTACCCCTCGCTCACGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGATGGTTTATATTACCCCTCACTCAAGCTTTAGTGAGGGTTAATATTACCCCTCACTACAGCTTTAGTGAGGGTTAATATTAACCCTCACTACAGCTTTAGTGCGGGTTAATATTCACCCTCACTACAGCTTTAGTGAGGGTTAATATTACCCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCCTACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTCAACGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAACATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCTCACTNCACGCTTTAGTGAGTGTTAATATTAAC] [+] EMBL CA757631 [TTGGCTCTCGTTACTTAGTGTCTGCTCTCTTAGCCGTACCTTAAACCTTCACGCGCTTTCCCCTATTCCACGCTGCCCTCACGACTCGTGTGCGCGACTCTATATTTCCCCGCCTGCGGTTTAGTTCGGGTTATATCTCCTCCTCCCTCGTCCTTCCGTTCGGGGTTCTCTTAACCCTCGCTCTAGCTTTCGTCTCGGTCAGCTTTACCCCCTCACTAATTCTTTAGTCCGACTTTAATTTTAGCCCTTACTACAGCTTTAGTGTGGGTTCTTATTCCCCCTCACAAAAGCTTTAGTGAGCGTTACTCTACCCCTCGCTCACGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGATGGTTTATATTACCCCTCACTCAAGCTTTAGTGAGGGTTAATATTACCCCTCACTACAGCTTTAGTGAGGGTTAATATTAACCCTCACTACAGCTTTAGTGCGGGTTAATATTCACCCTCACTACAGCTTTAGTGAGGGTTAATATTACCCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCCTACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTCAACGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAACATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCTCACTNCACGCTTTAGTGAGTGTTAATATTAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1947#0 GCTTTATATCAACCCTCACTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCT 60 consensus_1947#1 ------------------------------------------TTGGCTCTCGTTA----C 14 ** * *** ** consensus_1947#0 TTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTT-----GGTGTTGAC 115 consensus_1947#1 TTAGTGTCTGCTC-TCTTAGCCGTACCTTAAACCTTCACGCGCTTTCCCCTATTCCACGC 73 ****** * * * *** ** * ** ** * ** * * ** * * consensus_1947#0 CGGCACTGGGAGTCGGGTGGGCCAAGATGTTAGAGCGTGACCGAGACGGAGAGGAGAGGC 175 consensus_1947#1 TGCCCTCACGACTCGTGTGCGC---GACTCTATATTTCCCCGCCTGCGGTTTAGTTCGGG 130 * * ** *** *** ** ** ** * * *** * ** consensus_1947#0 AAGAATCGACACGAGAGGAGCGTAAGACCAGCGACGCACCCGGCGAAGCGTGGCGGACGC 235 consensus_1947#1 TTATATCTCCTCCT-------------CCCTCGTCCTTCCGTTCGGGGTTCTCTTAACCC 177 *** * * ** ** * ** ** * ** * consensus_1947#0 GGCCGAGGGAGCAGAGAACACCGACCAGCACCACCGAGCCCCAGAGCAGCGAGCACCCCG 295 consensus_1947#1 --TCGCTCTAGCTTTCGTC-TCGGTCAGCTTTACC---CCCTCACTAATTCTTTAGTCCG 231 ** *** * ** **** *** *** * * *** consensus_1947#0 CCCCGCGCGCCAGCGGCGAGGACCAGACGGAGAGAGACCAGGGGCGCCCGCCCACGGAGG 355 consensus_1947#1 ACTTTAATTTTAGCCCTTACTAC-AGCTTTAGTGTGGGTTCTTATTCCCCCTCACAAAAG 290 * *** * ** ** ** * * *** * *** * * consensus_1947#0 GGACAAACAGAGGCAGCGACGCGCTACAACACCACGACACCCCGCGGGAGCGGACCGAAA 415 consensus_1947#1 C------TTTAGTGAGCGTTACTCTACCCCTCGCTCACGCTTTAGTGAGGGTTAATATTA 344 ** **** * **** * * ** * * * * * consensus_1947#0 GGCCACACGAAAAAGAACACGCCCGAGAGACCGAGAGAGAGCCGCGAGGGGAACGGCACC 475 consensus_1947#1 ACCCTCACTAAAG------CTTTAGTGATGGTTTATATTACCCCTCACTCAAGCTTTAGT 398 ** *** *** * * ** * ** * * * * consensus_1947#0 GAAGGGGCGCAGTCAAAGGCGGGACCGCACAAAGCAACCTACGGCCCCGAACATATCACG 535 consensus_1947#1 GAGGGTTAATATTACCCCTCACTACAGCTTTAGTGAGGGTTAATATTAACCCTCACTACA 458 ** ** * * * ** ** * * * * * ** consensus_1947#0 CAAAAAGCACGGAACACCGACCGACCA-ACGACACCGAAGGAGACGCGCAGGCACACAAC 594 consensus_1947#1 GCTTTAGTGCGGGTTAATATTCACCCTCACTACAGCTTTAGTGAGGGTTA---ATATTAC 515 ** *** * * ** ** *** * * ** * * * * ** consensus_1947#0 CGACGAACGGGGGCCCAACACGCGAGACGAAAATGGAGGAGGGCCAAGGCAACGGGACGA 654 consensus_1947#1 CCCTCACTAAAGCTTTAGTG---AGGGTTAATATTAACCCCTACTAAAGCTTTAGT---- 568 * * * * * ** ** * * ** ** * consensus_1947#0 AAAGAGCAACAGCCGCCAGCACGCCACAGCCAGGGGGGTGGAAATAGCGGCGAGAGCCCA 714 consensus_1947#1 GAGGGTTAATATTAACCCTCACTCAACGCTTTAGTGAGGGTTAATATTAACC----CTCA 624 * * ** * ** *** * ** * * * * **** * * ** consensus_1947#0 ACAACGAGGCGCCAAGG--CGGCACCGCCCCAGAAACAGCCCACCAAGAGGCTCCACCCC 772 consensus_1947#1 CTAAAGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAATATT 684 ** * *** * *** * * * **** * * consensus_1947#0 CCCCCCCTCAAAAACAGCCTGCGAGCACGCGAGCATCCACGACC-CCACGGCCCGCACGC 831 consensus_1947#1 AACCCTCACTAA---AGCTTTAGTGAGGGTTAATATTAACCCTCACTAAAGCTTTAGTGA 741 *** * * ** *** * * * * * ** ** * * * ** * consensus_1947#0 GACAAAGACTCGACAAACCTTCAAAGAGGCGCGAGCGGCACCGTCCCCCCGAAGAGAAGC 891 consensus_1947#1 GGGTTAATATTAACCCTCACTAAAGCTTTAGTGAGGGTTAACATTAACCCTCACTAAAGC 801 * * * ** * * ** * *** * * * * *** * **** consensus_1947#0 AGCGGCGAACCGGACGGAATAAAAAGAACGCGCAGCGCGGGGCAGGAAAAGAGCGTACAG 951 consensus_1947#1 TTTAGTGAG--GGTTAATATTAAC----CTCACTNCACGCTTTAGTGAGTGTTAATATTA 855 * ** ** ** ** * * * * ** ** * * ** consensus_1947#0 AGAGCCGGACCGGCCGAGAGCATCGCTTCGCCCCCGAGAAGACGAGAGGACCAGCAAGCC 1011 consensus_1947#1 AC---------------------------------------------------------- 857 * consensus_1947#0 GCACAAGAGCAGACGCACCAAAG 1034 consensus_1947#1 ----------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||