Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1957 cluster # 1957       Sequences # 2       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1957#0 length = 3410 sequences # 2  
consensusID : consensus_1957#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 3410
fasta sequence 
                              [CACTCTCACAAACCAATCAAGAAACACAATACGTCCCATGACGATCATGATGAGCCTGAGGCTTGAATTATCCCTCGTCCTCATCCTGACGCCGATCGTTGCAGCCGTCGCTGGTGGTGGCAGCAGCAGCAGCAGCGATGAGGCCACGTTGCTTGCCTTCAAGGCAGCGTTCAGGGGGAGCAGCTCAAGTGCGCTCGCCTCCTGGAACAGCAGCACCAGTTTCTGCAGCTGGGAGGGCGTCACGTGCGACCGTCGGACGCCGGCGCGGGTGGCGGCGCTGACGCTGCCCTCCGGCAATCTCGCCGGCGGGCTCCCTCCGGTCATCGGGAACCTCAGCTTCTTGCAGAGCCTAAACTTGAGCTCAAACGAGCTGTATGGAGAAATTCCCCCGAGCCTTGGCCGCCTCCGGCGTCTAGAGATCCTGGACATTGGAGGCAACTCGTTTTCCGGTGAGCTCCCTGCCAATCTGAGTTCCTGCATCAGCATGAAGAATCTGGGCCTCGCCTTTAACCAGCTTGGCGGCCGCATCCCGGTGGAGCTGGGCAACACATTGACACAACTCCAGAAGCTGCAGCTGCAAAACAACAGCTTCACTGGGCCAATTCCGGCATCGCTAGCGAACCTGTCATTGCTTCAGTATCTGTACATGGACAACAACAACCTGGAGGGCCTGATCCCGCTGGACCTCGGCAAAGCTGCAGCTCTACGTGAATTTAGTTTTCAGCAGAACAGTCTCTCCGGCATATTTCCGTCCTCTCTGTGGAACCTGTCAACACTGACGGTGCTTGCAGCAAATGACAACATGCTACAAGGAAGCATTCCTGCCAACATCGGTGACAAGTTCCCTGGCATACAATACTTTGGATTGGCGGATAACCAATTCAGTGGAGTAATACCTTCTTCTCTCTTCAATCTTTCATCACTCACAATTGTGCTCCTTTATGGTAATAGATTCAGTGGATTTGTGCCTCCTACTGTGGGAAGGTTGAAATCTCTTCGGCGATTATACTTGTATGGCAACCGACTTGAGGCAAATAACAGGAAGGGTTGGGAATTTATCACTTCACTAACCAACTGCAGTCAGCTGCAACAGCTTGTTATCTCAGACAACTCTTTCAGCGGGCAACTTCCAAACTCTGTTGTCAACTTGTCGACCACACTCCATAAGCTCTACTTAGATAATAATAGCATCTCTGGGAGCATACCTGAGGACATTGGCAATTTGATTGGCTTGGACACGCTGGATCTGGGGTTCACTTCCTTATCTGGAGTGATTCCAGCGAGCATCGGG-AAGCTATCAAATTTGGTTGAAGTTGCCCTGTACAACACC-AGCTTGTCAGGCCTCATACCATCATCAATTGGAAATCTTACAAATTTGAATAGGCTCTACGCATACTACACCAATTTGGAAGGGCCAATCCCTGCAAGCCTTGGGAAGCTAAAAACGTTATTTGTTCTGGACTTATCGACCAACCGTCTTAATGGGTCAATCCCAAAGGAAATCTTGGAGCTTCCTTCACTCTCTTGGTACTTGGACTTGTCATACAATTCTCTCTCTGGACCCCTTCCAATAGAAGTTGCTACCTTGGCTAACCTAAACCAGTTGATACTGTCGGGAAACCAGTTGTCTGGTCAAATACCTGACAGTATAGGAAATTGTCAGGTGCTGGAATCGCTACTGCTAGATAAAAACTCATTTGAAGGCGGCATACCTCAATCTTTGACCAACCTGAAAGGGCTCAACATCCTGAACCTAACCATGAATAAGTTATCTGGTAGGATCCCCGATACCATTGGTAGGATTGGCAATCTGCAACAACTATTTCTAGCACAGAACAATTTTTCAGGACCCATCCCAGCAACTCTGCAAAATTTGACAATGTTGTGGAAATTAGATGTGTCATTCAATAATTTGCAAGGAGAAGTACCAGATGAGGGAGTTTTCAAGAACCTTACGTACGCATCGGTTGCAGGGAACGACAACTTGTGTGGTGGAATACCTCAGCTTCACTTGGCTCCATGTCCCATTATTGATGCAAGCAAAAACAACAAACGGTGGCATAAGTCTCTTAAAATCGCCCTGCCAATAACAGGATCAATCTTGCTGTTAGTTTCAGCTACTGTTCTAATTCAGTTCTGCAGGAAGCTTAAACGGAGACAAAATAGTCGAGCAACAATCCCAGGTACTGATGAACACTATCATAGAGTTTCATATTATGCATTAGCCAGAGGAAGTAATGAATTTTCAGAAGCTAATTTGCTTGGCAAAGGAAGTTATGGTTCCGTCTATAGATGTACTTTAGAAGATGAAGGTGCAATTGTGGCTGTAAAAGTGTTCAACCTTCGACAATCAGGATCTGCCAAGAGTTTTGAGGTTGAATGTGAGGCTTTGAGAAGAGTACGACATCGTTGTCTTATAAAGATCATCACCTGTTGCTCAAGTATCAATCCACAGGGTCACGAGTTCAAGGCATTAGTTTTTGAGTACATGCCCAATGGAAGCTTAGATGGTTGGCTTCATCCCGTGTCAGGCAATCCCACTTCTAGCAACACACTGAGCCTTTCGCAGAGACTCGGCATTGCAGTTGATATCTTGGATGCACTGGATTATCTTCACAACCATTGTCAGCCACCGATCATCCATTGCGACCTGAAACCAAGTAATATTCTTCTTGCAGAAGACATGAGCGCTAAGGTTGGAGATTTCGGCATATCAAGAATCCTCCCTGAAAGTATAGTTAAAGCACTGCAACATTCAGACAGCATAGTTGGAATCAGAGGTTCCATTGGTTATATTCCACCAGAGTACGGAGAAGGTTCTGCAGTCTCCAGACTAGGTGATATTTACAGCTTAGGCATATTATTGCTTGAGATATTTACCGGAAGGAGCCCTACTGATGACATGTTCAAGGATTCGGTGGATCTGCACAAATTTGCATCAGCAGCATTTCCTGGCCGAGTCCTAGATATAGCTGATCGAACAATCTGGCTACATGAAGAAGCAAAAAATAAAGATATAACAGATGCAAGCATAACACGAAGTATTGTTCAAGACTGCTTGGTTTCTGTCCTTAGACTTGGCATATCCTGCTCAAAGCAACAAGCCAAAGATCGAATGTTGTTAGCAGATGCTGTGTCAAAGATGCATGCAATCAGAGATGAATATCTTCTGTCTCAGGTGGTTAAGAAATGAACAGTAAAGTACTTGAGCTAAATGTTGGGTGAGGACGTGAGGTCCACATGTAGAGTTGATGATTGCATTGGGAAATAATCAGAGGTACACAAGGTGTTATAGCATTATATTAAGCTTAGATGCATGTCAGTGTAAGAGATGCATACAGAATGCAATAATGTTGATTGCACGATGTAGAAGTACGAGAGTTTTGGCTTCTTACACAATGTGAGTAAGA]

[+] EMBL AK102745             [CACTCTCACAAACCAATCAAGAAACACAATACGTCCCATGACGATCATGATGAGCCTGAGGCTTGAATTATCCCTCGTCCTCATCCTGACGCCGATCGTTGCAGCCGTCGCTGGTGGTGGCAGCAGCAGCAGCAGCGATGAGGCCACGTTGCTTGCCTTCAAGGCAGCGTTCAGGGGGAGCAGCTCAAGTGCGCTCGCCTCCTGGAACAGCAGCACCAGTTTCTGCAGCTGGGAGGGCGTCACGTGCGACCGTCGGACGCCGGCGCGGGTGGCGGCGCTGACGCTGCCCTCCGGCAATCTCGCCGGCGGGCTCCCTCCGGTCATCGGGAACCTCAGCTTCTTGCAGAGCCTAAACTTGAGCTCAAACGAGCTGTATGGAGAAATTCCCCCGAGCCTTGGCCGCCTCCGGCGTCTAGAGATCCTGGACATTGGAGGCAACTCGTTTTCCGGTGAGCTCCCTGCCAATCTGAGTTCCTGCATCAGCATGAAGAATCTGGGCCTCGCCTTTAACCAGCTTGGCGGCCGCATCCCGGTGGAGCTGGGCAACACATTGACACAACTCCAGAAGCTGCAGCTGCAAAACAACAGCTTCACTGGGCCAATTCCGGCATCGCTAGCGAACCTGTCATTGCTTCAGTATCTGTACATGGACAACAACAACCTGGAGGGCCTGATCCCGCTGGACCTCGGCAAAGCTGCAGCTCTACGTGAATTTAGTTTTCAGCAGAACAGTCTCTCCGGCATATTTCCGTCCTCTCTGTGGAACCTGTCAACACTGACGGTGCTTGCAGCAAATGACAACATGCTACAAGGAAGCATTCCTGCCAACATCGGTGACAAGTTCCCTGGCATACAATACTTTGGATTGGCGGATAACCAATTCAGTGGAGTAATACCTTCTTCTCTCTTCAATCTTTCATCACTCACAATTGTGCTCCTTTATGGTAATAGATTCAGTGGATTTGTGCCTCCTACTGTGGGAAGGTTGAAATCTCTTCGGCGATTATACTTGTATGGCAACCGACTTGAGGCAAATAACAGGAAGGGTTGGGAATTTATCACTTCACTAACCAACTGCAGTCAGCTGCAACAGCTTGTTATCTCAGACAACTCTTTCAGCGGGCAACTTCCAAACTCTGTTGTCAACTTGTCGACCACACTCCATAAGCTCTACTTAGATAATAATAGCATCTCTGGGAGCATACCTGAGGACATTGGCAATTTGATTGGCTTGGACACGCTGGATCTGGGGTTCACTTCCTTATCTGGAGTGATTCCAGCGAGCATCGGG AAGCTATCAAATTTGGTTGAAGTTGCCCTGTACAACACC AGCTTGTCAGGCCTCATACCATCATCAATTGGAAATCTTACAAATTTGAATAGGCTCTACGCATACTACACCAATTTGGAAGGGCCAATCCCTGCAAGCCTTGGGAAGCTAAAAACGTTATTTGTTCTGGACTTATCGACCAACCGTCTTAATGGGTCAATCCCAAAGGAAATCTTGGAGCTTCCTTCACTCTCTTGGTACTTGGACTTGTCATACAATTCTCTCTCTGGACCCCTTCCAATAGAAGTTGCTACCTTGGCTAACCTAAACCAGTTGATACTGTCGGGAAACCAGTTGTCTGGTCAAATACCTGACAGTATAGGAAATTGTCAGGTGCTGGAATCGCTACTGCTAGATAAAAACTCATTTGAAGGCGGCATACCTCAATCTTTGACCAACCTGAAAGGGCTCAACATCCTGAACCTAACCATGAATAAGTTATCTGGTAGGATCCCCGATACCATTGGTAGGATTGGCAATCTGCAACAACTATTTCTAGCACAGAACAATTTTTCAGGACCCATCCCAGCAACTCTGCAAAATTTGACAATGTTGTGGAAATTAGATGTGTCATTCAATAATTTGCAAGGAGAAGTACCAGATGAGGGAGTTTTCAAGAACCTTACGTACGCATCGGTTGCAGGGAACGACAACTTGTGTGGTGGAATACCTCAGCTTCACTTGGCTCCATGTCCCATTATTGATGCAAGCAAAAACAACAAACGGTGGCATAAGTCTCTTAAAATCGCCCTGCCAATAACAGGATCAATCTTGCTGTTAGTTTCAGCTACTGTTCTAATTCAGTTCTGCAGGAAGCTTAAACGGAGACAAAATAGTCGAGCAACAATCCCAGGTACTGATGAACACTATCATAGAGTTTCATATTATGCATTAGCCAGAGGAAGTAATGAATTTTCAGAAGCTAATTTGCTTGGCAAAGGAAGTTATGGTTCCGTCTATAGATGTACTTTAGAAGATGAAGGTGCAATTGTGGCTGTAAAAGTGTTCAACCTTCGACAATCAGGATCTGCCAAGAGTTTTGAGGTTGAATGTGAGGCTTTGAGAAGAGTACGACATCGTTGTCTTATAAAGATCATCACCTGTTGCTCAAGTATCAATCCACAGGGTCACGAGTTCAAGGCATTAGTTTTTGAGTACATGCCCAATGGAAGCTTAGATGGTTGGCTTCATCCCGTGTCAGGCAATCCCACTTCTAGCAACACACTGAGCCTTTCGCAGAGACTCGGCATTGCAGTTGATATCTTGGATGCACTGGATTATCTTCACAACCATTGTCAGCCACCGATCATCCATTGCGACCTGAAACCAAGTAATATTCTTCTTGCAGAAGACATGAGCGCTAAGGTTGGAGATTTCGGCATATCAAGAATCCTCCCTGAAAGTATAGTTAAAGCACTGCAACATTCAGACAGCATAGTTGGAATCAGAGGTTCCATTGGTTATATTCCACCAGAGTACGGAGAAGGTTCTGCAGTCTCCAGACTAGGTGATATTTACAGCTTAGGCATATTATTGCTTGAGATATTTACCGGAAGGAGCCCTACTGATGACATGTTCAAGGATTCGGTGGATCTGCACAAATTTGCATCAGCAGCATTTCCTGGCCGAGTCCTAGATATAGCTGATCGAACAATCTGGCTACATGAAGAAGCAAAAAATAAAGATATAACAGATGCAAGCATAACACGAAGTATTGTTCAAGACTGCTTGGTTTCTGTCCTTAGACTTGGCATATCCTGCTCAAAGCAACAAGCCAAAGATCGAATGTTGTTAGCAGATGCTGTGTCAAAGATGCATGCAATCAGAGATGAATATCTTCTGTCTCAGGTGGTTAAGAAATGAACAGTAAAGTACTTGAGCTAAATGTTGGGTGAGGACGTGAGGTCCACATGTAGAGTTGATGATTGCATTGGGAAATAATCAGAGGTACACAAGGTGTTATAGCATTATATTAAGCTTAGATGCATGTCAGTGTAAGAGATGCATACAGAATGCAATAATGTTGATTGCACGATGTAGAAGTACGAGAGTTTTGGCTTCTTACACAATGTGAGTAAGA]
[-] EMBL C26250               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ggcCTTGGACACGCTGGATCTGGGGNTNACCTCCTTATCTGAAGTGATTCCAACGAGCATCGGGAAAGCTATCAAATTTGGTTGAAGTTGCCCTGTACAACACCAAGCTTGTAAGGCCTCATACCATCATCAATTGGAAATCTTACAAATTTGAATAGGCTCTACGCATACTACACCAATTTGGAAGGGCCAATCCCTGCAAGCCTTGGGAAGCTAAAAACGTTATTTGTTCTGGACTTATCGACCAACCGTCTTAATGGGTCAATCCCAAAGGAAATCTTGGAGCTTCCTTNACTCTCTTGGTACTTGGACTTGTCATACAATTCTCTCTCTGGACCCCTTCCAATAGAAGTTGCTACCTTGGCTAACCTAAACCAGTTGATACTGTCGGGAAACCAGTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]




>consensus_1957#0
CACTCTCACAAACCAATCAAGAAACACAATACGTCCCATGACGATCATGATGAGCCTGAG
GCTTGAATTATCCCTCGTCCTCATCCTGACGCCGATCGTTGCAGCCGTCGCTGGTGGTGG
CAGCAGCAGCAGCAGCGATGAGGCCACGTTGCTTGCCTTCAAGGCAGCGTTCAGGGGGAG
CAGCTCAAGTGCGCTCGCCTCCTGGAACAGCAGCACCAGTTTCTGCAGCTGGGAGGGCGT
CACGTGCGACCGTCGGACGCCGGCGCGGGTGGCGGCGCTGACGCTGCCCTCCGGCAATCT
CGCCGGCGGGCTCCCTCCGGTCATCGGGAACCTCAGCTTCTTGCAGAGCCTAAACTTGAG
CTCAAACGAGCTGTATGGAGAAATTCCCCCGAGCCTTGGCCGCCTCCGGCGTCTAGAGAT
CCTGGACATTGGAGGCAACTCGTTTTCCGGTGAGCTCCCTGCCAATCTGAGTTCCTGCAT
CAGCATGAAGAATCTGGGCCTCGCCTTTAACCAGCTTGGCGGCCGCATCCCGGTGGAGCT
GGGCAACACATTGACACAACTCCAGAAGCTGCAGCTGCAAAACAACAGCTTCACTGGGCC
AATTCCGGCATCGCTAGCGAACCTGTCATTGCTTCAGTATCTGTACATGGACAACAACAA
CCTGGAGGGCCTGATCCCGCTGGACCTCGGCAAAGCTGCAGCTCTACGTGAATTTAGTTT
TCAGCAGAACAGTCTCTCCGGCATATTTCCGTCCTCTCTGTGGAACCTGTCAACACTGAC
GGTGCTTGCAGCAAATGACAACATGCTACAAGGAAGCATTCCTGCCAACATCGGTGACAA
GTTCCCTGGCATACAATACTTTGGATTGGCGGATAACCAATTCAGTGGAGTAATACCTTC
TTCTCTCTTCAATCTTTCATCACTCACAATTGTGCTCCTTTATGGTAATAGATTCAGTGG
ATTTGTGCCTCCTACTGTGGGAAGGTTGAAATCTCTTCGGCGATTATACTTGTATGGCAA
CCGACTTGAGGCAAATAACAGGAAGGGTTGGGAATTTATCACTTCACTAACCAACTGCAG
TCAGCTGCAACAGCTTGTTATCTCAGACAACTCTTTCAGCGGGCAACTTCCAAACTCTGT
TGTCAACTTGTCGACCACACTCCATAAGCTCTACTTAGATAATAATAGCATCTCTGGGAG
CATACCTGAGGACATTGGCAATTTGATTGGCTTGGACACGCTGGATCTGGGGTTCACTTC
CTTATCTGGAGTGATTCCAGCGAGCATCGGGAAGCTATCAAATTTGGTTGAAGTTGCCCT
GTACAACACCAGCTTGTCAGGCCTCATACCATCATCAATTGGAAATCTTACAAATTTGAA
TAGGCTCTACGCATACTACACCAATTTGGAAGGGCCAATCCCTGCAAGCCTTGGGAAGCT
AAAAACGTTATTTGTTCTGGACTTATCGACCAACCGTCTTAATGGGTCAATCCCAAAGGA
AATCTTGGAGCTTCCTTCACTCTCTTGGTACTTGGACTTGTCATACAATTCTCTCTCTGG
ACCCCTTCCAATAGAAGTTGCTACCTTGGCTAACCTAAACCAGTTGATACTGTCGGGAAA
CCAGTTGTCTGGTCAAATACCTGACAGTATAGGAAATTGTCAGGTGCTGGAATCGCTACT
GCTAGATAAAAACTCATTTGAAGGCGGCATACCTCAATCTTTGACCAACCTGAAAGGGCT
CAACATCCTGAACCTAACCATGAATAAGTTATCTGGTAGGATCCCCGATACCATTGGTAG
GATTGGCAATCTGCAACAACTATTTCTAGCACAGAACAATTTTTCAGGACCCATCCCAGC
AACTCTGCAAAATTTGACAATGTTGTGGAAATTAGATGTGTCATTCAATAATTTGCAAGG
AGAAGTACCAGATGAGGGAGTTTTCAAGAACCTTACGTACGCATCGGTTGCAGGGAACGA
CAACTTGTGTGGTGGAATACCTCAGCTTCACTTGGCTCCATGTCCCATTATTGATGCAAG
CAAAAACAACAAACGGTGGCATAAGTCTCTTAAAATCGCCCTGCCAATAACAGGATCAAT
CTTGCTGTTAGTTTCAGCTACTGTTCTAATTCAGTTCTGCAGGAAGCTTAAACGGAGACA
AAATAGTCGAGCAACAATCCCAGGTACTGATGAACACTATCATAGAGTTTCATATTATGC
ATTAGCCAGAGGAAGTAATGAATTTTCAGAAGCTAATTTGCTTGGCAAAGGAAGTTATGG
TTCCGTCTATAGATGTACTTTAGAAGATGAAGGTGCAATTGTGGCTGTAAAAGTGTTCAA
CCTTCGACAATCAGGATCTGCCAAGAGTTTTGAGGTTGAATGTGAGGCTTTGAGAAGAGT
ACGACATCGTTGTCTTATAAAGATCATCACCTGTTGCTCAAGTATCAATCCACAGGGTCA
CGAGTTCAAGGCATTAGTTTTTGAGTACATGCCCAATGGAAGCTTAGATGGTTGGCTTCA
TCCCGTGTCAGGCAATCCCACTTCTAGCAACACACTGAGCCTTTCGCAGAGACTCGGCAT
TGCAGTTGATATCTTGGATGCACTGGATTATCTTCACAACCATTGTCAGCCACCGATCAT
CCATTGCGACCTGAAACCAAGTAATATTCTTCTTGCAGAAGACATGAGCGCTAAGGTTGG
AGATTTCGGCATATCAAGAATCCTCCCTGAAAGTATAGTTAAAGCACTGCAACATTCAGA
CAGCATAGTTGGAATCAGAGGTTCCATTGGTTATATTCCACCAGAGTACGGAGAAGGTTC
TGCAGTCTCCAGACTAGGTGATATTTACAGCTTAGGCATATTATTGCTTGAGATATTTAC
CGGAAGGAGCCCTACTGATGACATGTTCAAGGATTCGGTGGATCTGCACAAATTTGCATC
AGCAGCATTTCCTGGCCGAGTCCTAGATATAGCTGATCGAACAATCTGGCTACATGAAGA
AGCAAAAAATAAAGATATAACAGATGCAAGCATAACACGAAGTATTGTTCAAGACTGCTT
GGTTTCTGTCCTTAGACTTGGCATATCCTGCTCAAAGCAACAAGCCAAAGATCGAATGTT
GTTAGCAGATGCTGTGTCAAAGATGCATGCAATCAGAGATGAATATCTTCTGTCTCAGGT
GGTTAAGAAATGAACAGTAAAGTACTTGAGCTAAATGTTGGGTGAGGACGTGAGGTCCAC
ATGTAGAGTTGATGATTGCATTGGGAAATAATCAGAGGTACACAAGGTGTTATAGCATTA
TATTAAGCTTAGATGCATGTCAGTGTAAGAGATGCATACAGAATGCAATAATGTTGATTG
CACGATGTAGAAGTACGAGAGTTTTGGCTTCTTACACAATGTGAGTAAGA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)