Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1958 cluster # 1958       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1958#0 length = 1475 sequences # 2  

consensusID : consensus_1958#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1475
fasta sequence
                              [AACAAGAATTTAGAGTTGCAGCGCTTGGTGGGGGTTCAGACAAACATGCTAAAGAATTCTGGGGTCACTATAATTGAAGGCCGTGGAAAGGTTGTTGATCCACATACTGTCAGTGTTGATGGAAAGCTTTATACTGCAAAAAACATACTCATTGCAGTTGGTGGTCGGCCATCCATGCCAGACATTCCAGGGATAGAGCATGTTATTGATTCAGATGCAGCATTGGACCTGCCTTCAAGACCTGAGAAGATTGCGATAGTAGGAGGAGGGTATATTGCTTTGGAGTTTGCTGGCATTTTCAATGGCTTAAAAAGTGGTGTTCATGTTTTCATCCGACAGAAGAAAGTACTGAGAGGCTTTGATGAGGAGGTCAGGGATTTTGTTGCCGATCAGATGTCTTTGAGGGGTATCACATTTCATACCGAAGAGACTCCTCAAGCAGTAATGAAATCAGACGATGGCTTGCTGACTCTGACGACAAACAAAGGAAGCATAAATGGGTTCTCACATGTAATGTTTGCAACAGGACGAAAACCAAATACAAAGAATTTGGGTCTAGAAGAGGTTGGGGTCAAAATGGACAAGCATGGTGCTATTGTGGTTGATGAGTTCTCTCGAACCTCAGTTGATTCTATATGGGCTGTGGGTGATGTTACTAACAGGGTGAACTTGACACCGG-TTGCATTAATGGAAGG-TGGGGCATTAGCAAGGACTA-TTTTTGGCAATGAACCTACAAAACCAGATTACAGTGCTGTGCCATCTGCGGTGTTTTCCCAACCTCCAATTGGACAAGTTGGACTCACTGAAGAGAAGGCGATCGAAAAGTATGGAGATGTTGATGTCTACACATCAAACTTCAGACCTCTCAGGGCCACTCTTTCTGGTCTACCTGATCGTGTATACATGAAGGTTATCGTGTGTGCTAATACTAACAAAGTTCTAGGAGTGCACGTGTGTGGTGAAGATGCACCCGAGATTATTCAGGGTATTGCAATTGCTGTAAAGGCTGGGTTGATGAAGCAAAACTTTGATGCCACCATAGGTGTCCACCCAACCACTGCAGAAGAACTTGTCACAATGAGAAGCCCGACTAGGAAGGTCCGGAGAGATGCTGTGGATGAGGCCAAAATGAAAGATGAGGCCACAAGTCAGAAGTAGATACACCTGCCCTGCATAAATGAGTCTGACCAGTCGATTTCTAACCGCGGAAACAACAGACAGATATCGGTATTTCGAGCAGTACCAGAGAAATCCAACCCACGATTGCAGCCAGTGAAGAACGGAGATGAGTTACAGCAAATGGCTAGCTATCTCGTATATTGCATGGTTTATAAGTTCATTATTATAGAAACCAGCTCAAGTTCCTTTTATTTTTTTGGCCTAACATGTTACTGAAAGAAATGCTTCAGGTCCCGGTCAAAAAAAAGAAAGAAATGCTTCAGGATGTTGATAGTATTGCCGCATGAAATTTTTTG]

[+] EMBL AK108799             [AACAAGAATTTAGAGTTGCAGCGCTTGGTGGGGGTTCAGACAAACATGCTAAAGAATTCTGGGGTCACTATAATTGAAGGCCGTGGAAAGGTTGTTGATCCACATACTGTCAGTGTTGATGGAAAGCTTTATACTGCAAAAAACATACTCATTGCAGTTGGTGGTCGGCCATCCATGCCAGACATTCCAGGGATAGAGCATGTTATTGATTCAGATGCAGCATTGGACCTGCCTTCAAGACCTGAGAAGATTGCGATAGTAGGAGGAGGGTATATTGCTTTGGAGTTTGCTGGCATTTTCAATGGCTTAAAAAGTGGTGTTCATGTTTTCATCCGACAGAAGAAAGTACTGAGAGGCTTTGATGAGGAGGTCAGGGATTTTGTTGCCGATCAGATGTCTTTGAGGGGTATCACATTTCATACCGAAGAGACTCCTCAAGCAGTAATGAAATCAGACGATGGCTTGCTGACTCTGACGACAAACAAAGGAAGCATAAATGGGTTCTCACATGTAATGTTTGCAACAGGACGAAAACCAAATACAAAGAATTTGGGTCTAGAAGAGGTTGGGGTCAAAATGGACAAGCATGGTGCTATTGTGGTTGATGAGTTCTCTCGAACCTCAGTTGATTCTATATGGGCTGTGGGTGATGTTACTAACAGGGTGAACTTGACACCGG TTGCATTAATGGAAGG TGGGGCATTAGCAAGGACTA TTTTTGGCAATGAACCTACAAAACCAGATTACAGTGCTGTGCCATCTGCGGTGTTTTCCCAACCTCCAATTGGACAAGTTGGACTCACTGAAGAGAAGGCGATCGAAAAGTATGGAGATGTTGATGTCTACACATCAAACTTCAGACCTCTCAGGGCCACTCTTTCTGGTCTACCTGATCGTGTATACATGAAGGTTATCGTGTGTGCTAATACTAACAAAGTTCTAGGAGTGCACGTGTGTGGTGAAGATGCACCCGAGATTATTCAGGGTATTGCAATTGCTGTAAAGGCTGGGTTGATGAAGCAAAACTTTGATGCCACCATAGGTGTCCACCCAACCACTGCAGAAGAACTTGTCACAATGAGAAGCCCGACTAGGAAGGTCCGGAGAGATGCTGTGGATGAGGCCAAAATGAAAGATGAGGCCACAAGTCAGAAGTAGATACACCTGCCCTGCATAAATGAGTCTGACCAGTCGATTTCTAACCGCGGAAACAACAGACAGATATCGGTATTTCGAGCAGTACCAGAGAAATCCAACCCACGATTGCAGCCAGTGAAGAACGGAGATGAGTTACAGCAAATGGCTAGCTATCTCGTATATTGCATGGTTTATAAGTTCATTATTATAGAAACCAGCTCAAGTTCCTTTTATTTTTTTGGCCTAACATGTTACTGAAAGAAATGCTTCAGGTCCCGGTCAAAAAAAAGAAAGAAATGCTTCAGGATGTTGATAGTATTGCCGCATGAAATTTTTTG]
[+] EMBL C26229               [                                                                                                                                                                                                                                                                                                                                                                                               TGCCGATCAGATGTCTTTGAGGGGTATCACATTTCATACCGAAGAGACTCCTCAAGCAGTAATGAAATCAGACGATGGCTTGCTGACTCTGACGACAAACAAAGGAAGCATAAATGGGTTCTCACATGTAATGTTTGCAACAGGACGAAAACCAAATACAAAGAATTTGGGTCTAGAAGAGGTTGGGGTCAAAATGGACAAGCATGGTGCTATTGTGGTTGATGAGTTCTCTCGAACCTCAGTTGATTCTATATGGGCTGTGGGTGATGTTACTAACAGGGTGAACTTGACACCGGNTTGCATTAATGGAAGGTTGGGGCATTAGCAAGGACTATTTTTTGGCAATGAACCTACAAAACCAGATTACAGTGCTGTTCCATCT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]


>consensus_1958#0 AACAAGAATTTAGAGTTGCAGCGCTTGGTGGGGGTTCAGACAAACATGCTAAAGAATTCT GGGGTCACTATAATTGAAGGCCGTGGAAAGGTTGTTGATCCACATACTGTCAGTGTTGAT GGAAAGCTTTATACTGCAAAAAACATACTCATTGCAGTTGGTGGTCGGCCATCCATGCCA GACATTCCAGGGATAGAGCATGTTATTGATTCAGATGCAGCATTGGACCTGCCTTCAAGA CCTGAGAAGATTGCGATAGTAGGAGGAGGGTATATTGCTTTGGAGTTTGCTGGCATTTTC AATGGCTTAAAAAGTGGTGTTCATGTTTTCATCCGACAGAAGAAAGTACTGAGAGGCTTT GATGAGGAGGTCAGGGATTTTGTTGCCGATCAGATGTCTTTGAGGGGTATCACATTTCAT ACCGAAGAGACTCCTCAAGCAGTAATGAAATCAGACGATGGCTTGCTGACTCTGACGACA AACAAAGGAAGCATAAATGGGTTCTCACATGTAATGTTTGCAACAGGACGAAAACCAAAT ACAAAGAATTTGGGTCTAGAAGAGGTTGGGGTCAAAATGGACAAGCATGGTGCTATTGTG GTTGATGAGTTCTCTCGAACCTCAGTTGATTCTATATGGGCTGTGGGTGATGTTACTAAC AGGGTGAACTTGACACCGGTTGCATTAATGGAAGGTGGGGCATTAGCAAGGACTATTTTT GGCAATGAACCTACAAAACCAGATTACAGTGCTGTGCCATCTGCGGTGTTTTCCCAACCT CCAATTGGACAAGTTGGACTCACTGAAGAGAAGGCGATCGAAAAGTATGGAGATGTTGAT GTCTACACATCAAACTTCAGACCTCTCAGGGCCACTCTTTCTGGTCTACCTGATCGTGTA TACATGAAGGTTATCGTGTGTGCTAATACTAACAAAGTTCTAGGAGTGCACGTGTGTGGT GAAGATGCACCCGAGATTATTCAGGGTATTGCAATTGCTGTAAAGGCTGGGTTGATGAAG CAAAACTTTGATGCCACCATAGGTGTCCACCCAACCACTGCAGAAGAACTTGTCACAATG AGAAGCCCGACTAGGAAGGTCCGGAGAGATGCTGTGGATGAGGCCAAAATGAAAGATGAG GCCACAAGTCAGAAGTAGATACACCTGCCCTGCATAAATGAGTCTGACCAGTCGATTTCT AACCGCGGAAACAACAGACAGATATCGGTATTTCGAGCAGTACCAGAGAAATCCAACCCA CGATTGCAGCCAGTGAAGAACGGAGATGAGTTACAGCAAATGGCTAGCTATCTCGTATAT TGCATGGTTTATAAGTTCATTATTATAGAAACCAGCTCAAGTTCCTTTTATTTTTTTGGC CTAACATGTTACTGAAAGAAATGCTTCAGGTCCCGGTCAAAAAAAAGAAAGAAATGCTTC AGGATGTTGATAGTATTGCCGCATGAAATTTTTTG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)