These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1973#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence [GAATAGACTGAGGAATAGGGGATATGATATAGGTAACTGAGGANACCTGTGTGTTGAAAGCGTGATGCAAGCCGATCCTGGGCTGTGACGGAATGTTGATGCCGACTGATGCACAGGAATGTGCCTGAAGGTGTNTTGGGGCCGGAATGGGGAATTGGCTGATGTGCTGTGTGCTGACTGTCTGCGGAGGGTGATNAATGGACCAGATGCGAGAAGCTGCCGACTGAAACTCAGAATTGGGGGGGAGAAGTGCTTGATGNTGTGATGATGATGGTGAATGCGCCCCGCCTGATAGCGGTGAATCGCCCCCCCTATAGTTATAGTACCCCAATTCTATCTTGAACNTCCTGATTGTGTGTCAANCCAAAAGACCACGTGTGTTGTTTGATCTTGGAAAAAAAAAA] [+] EMBL BM421443 [GAATAGACTGAGGAATAGGGGATATGATATAGGTAACTGAGGANACCTGTGTGTTGAAAGCGTGATGCAAGCCGATCCTGGGCTGTGACGGAATGTTGATGCCGACTGATGCACAGGAATGTGCCTGAAGGTGTNTTGGGGCCGGAATGGGGAATTGGCTGATGTGCTGTGTGCTGACTGTCTGCGGAGGGTGATNAATGGACCAGATGCGAGAAGCTGCCGACTGAAACTCAGAATTGGGGGGGAGAAGTGCTTGATGNTGTGATGATGATGGTGAATGCGCCCCGCCTGATAGCGGTGAATCGCCCCCCCTATAGTTATAGTACCCCAATTCTATCTTGAACNTCCTGATTGTGTGTCAANCCAAAAGACCACGTGTGTTGTTTGATCTTGGAAAAAAAAAA] consensusID : consensus_1973#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [GTATCAGCCGACCTGGGCTTACGAATTTGATGGCCACTATCAAGGAATTCCTGAAGTTGTTGGCCGGAATGGGAATTGCTGATTGCTGTTGCTACTGTGCTGCGAGGGTATGATATCGACTAGATGCGAGAAGCTGCGACTGAAACTAGAATTGGGGGGAGAAGTGCTTGATGGTGTGATGATGATGGTGAATGCGCCCCGCCTGATGAGCGGTGAATGCGCCCCACCCTGATGAGTGTGATGAGTGACCCAAATGTGCTGATGCTTGGAACTTGCCTGATGTGTGTTG] [+] EMBL BI808724 [GTATCAGCCGACCTGGGCTTACGAATTTGATGGCCACTATCAAGGAATTCCTGAAGTTGTTGGCCGGAATGGGAATTGCTGATTGCTGTTGCTACTGTGCTGCGAGGGTATGATATCGACTAGATGCGAGAAGCTGCGACTGAAACTAGAATTGGGGGGAGAAGTGCTTGATGGTGTGATGATGATGGTGAATGCGCCCCGCCTGATGAGCGGTGAATGCGCCCCACCCTGATGAGTGTGATGAGTGACCCAAATGTGCTGATGCTTGGAACTTGCCTGATGTGTGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1973#0 GAATAGACTGAGGAATAGGGGATATGATATAGGTAACTGAGGANACCTGTGTGTTGAAAG 60 consensus_1973#1 ------------------------------------------------------------ consensus_1973#0 CGTGATGCAAGCCGATCCTGGGCTGTGACGGAATGTTGATGCCGACTGATGCACAGGAAT 120 consensus_1973#1 ----GTATCAGCCGA-CCTGGGCT--TACGAATT--TGATGGCCACTATCA---AGGAAT 48 * ****** ******** *** * * ***** * *** ****** consensus_1973#0 GTGCCTGAAGGTGTNTTGGGGCCGGAATGGGGAATTGGCTGATGTGCTGTGTGCTGACTG 180 consensus_1973#1 T--CCTGAAGTTGTT----GGCCGGAATGGGAATT--GCTGAT-TGCTGT-TGCT-ACTG 97 ******* *** ************ * * ****** ****** **** **** consensus_1973#0 TCTGCGGAGGGTGATNAATGGACCAGATGCGAGAAGCTGCCGACTGAAACTCAGAATTGG 240 consensus_1973#1 TGCTGCGAGGGTATGATATCGACTAGATGCGAGAAGCTGC-GACTGAAACT-AGAATTGG 155 * ****** ** *** **************** ********** ******** consensus_1973#0 GGGGGAGAAGTGCTTGATGNTGTGATGATGATGGTGAATGCGCCCCGCCTGAT-AGCGGT 299 consensus_1973#1 GGGG-AGAAGTGCTTGATGGTGTGATGATGATGGTGAATGCGCCCCGCCTGATGAGCGGT 214 **** ************** ********************************* ****** consensus_1973#0 GAATCGCCCCCCCTATAGTTATAGTACCCCAATTCTATCTTGAACNTCCTGATTGTGTGT 359 consensus_1973#1 GAATGCGCCCCACCCTGATGAGTGTGATGAG----TGACCCAAATGTGCTGATGCTTGG- 269 **** **** * * * * ** * * ** * ***** * * consensus_1973#0 CAANCCAAAAGACCACGTGTGTTGTTTGATCTTGGAAAAAAAAAA 404 consensus_1973#1 -AACTTGCCTGA---TGTGTGTTG--------------------- 289 ** ** ******** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||