cluster # 1974

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Oryza sativa
cluster # 1974 cluster # 1974 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1974#0 length = 189 sequences # 1

consensus_1974#1 length = 120 sequences # 1

consensusID : consensus_1974#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 189
fasta sequence

                              [GCCATCACCGCCCGTGGCAAAGCTTAAAGAATCGGATTGCTCACCCCCCTTCTTCTCTGTCTCACCATGACCATGTGTCATCTCCCAGTTTAAGCTTTCTTGTAGGAGACCTTGGTGTNTGCCGTGGCTCTGAATTCTGAAGTAAAGATATAGCCATGCAGGCAGCCAAGATAAGGAATGGCTCCTTGG]

[+] EMBL C25835               [GCCATCACCGCCCGTGGCAAAGCTTAAAGAATCGGATTGCTCACCCCCCTTCTTCTCTGTCTCACCATGACCATGTGTCATCTCCCAGTTTAAGCTTTCTTGTAGGAGACCTTGGTGTNTGCCGTGGCTCTGAATTCTGAAGTAAAGATATAGCCATGCAGGCAGCCAAGATAAGGAATGGCTCCTTGG]




>consensus_1974#0
GCCATCACCGCCCGTGGCAAAGCTTAAAGAATCGGATTGCTCACCCCCCTTCTTCTCTGT
CTCACCATGACCATGTGTCATCTCCCAGTTTAAGCTTTCTTGTAGGAGACCTTGGTGTNT
GCCGTGGCTCTGAATTCTGAAGTAAAGATATAGCCATGCAGGCAGCCAAGATAAGGAATG
GCTCCTTGG

consensusID : consensus_1974#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 120
fasta sequence

                              [TTCACGCAACGAACAGGAGTNGTNACCCACCTTCTGCTCTGTCTCACCATGACCATGTGTCATCTCCCAGTTTAAGCTTTCTTGTAGGAGACCTTGGTGTNTGNCGTGGCTCTGAATTCT]

[+] EMBL C25836               [TTCACGCAACGAACAGGAGTNGTNACCCACCTTCTGCTCTGTCTCACCATGACCATGTGTCATCTCCCAGTTTAAGCTTTCTTGTAGGAGACCTTGGTGTNTGNCGTGGCTCTGAATTCT]




>consensus_1974#1
TTCACGCAACGAACAGGAGTNGTNACCCACCTTCTGCTCTGTCTCACCATGACCATGTGT
CATCTCCCAGTTTAAGCTTTCTTGTAGGAGACCTTGGTGTNTGNCGTGGCTCTGAATTCT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1974#0      GCCATCACCGCCCGTGGCAAAGCTTAAAGAATCGGATTGCTCACCCCCCTTCTTCTCTGT 60
consensus_1974#1      ------------------TTCACGCAACGAACAGGAGTNGTNACCCACCTTCTGCTCTGT 42
                                            *  ** ***  *** *  * **** ****** ******

consensus_1974#0      CTCACCATGACCATGTGTCATCTCCCAGTTTAAGCTTTCTTGTAGGAGACCTTGGTGTNT 120
consensus_1974#1      CTCACCATGACCATGTGTCATCTCCCAGTTTAAGCTTTCTTGTAGGAGACCTTGGTGTNT 102
                      ************************************************************

consensus_1974#0      GCCGTGGCTCTGAATTCTGAAGTAAAGATATAGCCATGCAGGCAGCCAAGATAAGGAATG 180
consensus_1974#1      GNCGTGGCTCTGAATTCT------------------------------------------ 120
                      * ****************                                          

consensus_1974#0      GCTCCTTGG 189
consensus_1974#1      ---------