These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_199#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1476 fasta sequence [ATATATATATACACACAAACACACATATTTCAGATTAGCTTTGTAGCTAGCTAGCCATTGATCAGCTAGATAGAGATCGATCGATCCTGAATCGATATGGGTAGCTGCAATAGTTGGAAGCCAACATTGACAATGGTTGGGGTTGTGGTGGTGTTCGCGGTGATGAACACCCTCATCAAGATGGCCCTGAACGAGGGGATGCACGCCACCGTCCTCATCACGCTTCGTCAGCTCATCGCCACCCTCTTCCTCGCCCCGATCGCCTACTTCCGGGAGAGGAAGACAAGACCAAAGCTAACAGCTGAAATCTTGGTGTATCTCTTCTTCAGTGCGGTGCTCGGAGCGTCCCTTACCCAGTGGCTCTTCTTCCTGGGGCTGCAGTACACCACCGCAACATTCGCCTGCGCCTTCATCAACATGACTCCCATCTTCACCTTCCTTGTAGCTCTGCCTTATGGGCTGGAGAAAGTTAACCTGAACATAGCTGGCATAGCTAAAGTGGGAGGTACGGTGTTAGGATTCAGCGGAGCAATGGTCCTTGCTCTCTACCAGGGCCCATCGCTCACCAAGCTATCATCTTCATCTTCTTCATCATCATCTTCTTCCTCTCCGATGGCATCGGCGGCGGTGATCGCCGCCGGTCATGTCGGCGGCGCGCACAGATGGGCGATCGGGTCGGTGGCGTTGCTGGGTGGGTCGGCCTGCTGGTCGCTGTGGTTCATCCTGCAGTCGAGGATCGCCAGGAAGTACCCGGCTCTCTACTCGGGGACGGCCCTGATGTTCTTCCTCAGCTTCCTCCAGATGGCCGTGGTCGCCTTGGCCATCGACAGGGTTAGCTTGCCCCCATGGATCTTAAGGACCAAGCTTCAGATCATCACCGTGCTCTTTGTGGGGATAGTTGGGTCAGGAATAGGGTTCTTGGCAATGTCATGGTGTGTGGAGCAGAGAGGGCCGGTGTTCACGACTGCATTCACGCCTCTAATCCAGATCATTGCAGCTGCTATCAACGTCATCGTTCTCCGTGAGCAACTTCACCTTGGAACTGTGATAGGTTCTGCTTTGGTTATCATGGGCCTGTATTTCGTTCTCTGGGGAAAGAGTAAGGAGGCATCACCATCATCATCATCATCTCATCCAGCCAAGGAAGCTGTGCCTGTGCTGCAACAACAACACGGCCATGATGATCAAGAAACCACTAATGTACAGATGCAAACTGTCTAGTAATGTCGTAACAATAATTAACAAGCTATACGCAACGCATGCTCGCCGGTGAAGGACGTCGCACTCGACCGTGGATTAAAAGAAAAAATGAATTCATATGCATCAAGTAGTGAAATTAGTCCTCACGGCAGAAAAAAGATTTCCTGCCCTATATATATATATGCATTTCGACCAATTAGGAAGGAAGTTGGTCAAGATGATTAATTTTGTATGCTTGTAAGTTGTAACGGATCAAGAGAATGATATTTACATATA] [+] EMBL AK107131 [ATATATATATACACACAAACACACATATTTCAGATTAGCTTTGTAGCTAGCTAGCCATTGATCAGCTAGATAGAGATCGATCGATCCTGAATCGATATGGGTAGCTGCAATAGTTGGAAGCCAACATTGACAATGGTTGGGGTTGTGGTGGTGTTCGCGGTGATGAACACCCTCATCAAGATGGCCCTGAACGAGGGGATGCACGCCACCGTCCTCATCACGCTTCGTCAGCTCATCGCCACCCTCTTCCTCGCCCCGATCGCCTACTTCCGGGAGAGGAAGACAAGACCAAAGCTAACAGCTGAAATCTTGGTGTATCTCTTCTTCAGTGCGGTGCTCGGAGCGTCCCTTACCCAGTGGCTCTTCTTCCTGGGGCTGCAGTACACCACCGCAACATTCGCCTGCGCCTTCATCAACATGACTCCCATCTTCACCTTCCTTGTAGCTCTGCCTTATGGGCTGGAGAAAGTTAACCTGAACATAGCTGGCATAGCTAAAGTGGGAGGTACGGTGTTAGGATTCAGCGGAGCAATGGTCCTTGCTCTCTACCAGGGCCCATCGCTCACCAAGCTATCATCTTCATCTTCTTCATCATCATCTTCTTCCTCTCCGATGGCATCGGCGGCGGTGATCGCCGCCGGTCATGTCGGCGGCGCGCACAGATGGGCGATCGGGTCGGTGGCGTTGCTGGGTGGGTCGGCCTGCTGGTCGCTGTGGTTCATCCTGCAGTCGAGGATCGCCAGGAAGTACCCGGCTCTCTACTCGGGGACGGCCCTGATGTTCTTCCTCAGCTTCCTCCAGATGGCCGTGGTCGCCTTGGCCATCGACAGGGTTAGCTTGCCCCCATGGATCTTAAGGACCAAGCTTCAGATCATCACCGTGCTCTTTGTGGGGATAGTTGGGTCAGGAATAGGGTTCTTGGCAATGTCATGGTGTGTGGAGCAGAGAGGGCCGGTGTTCACGACTGCATTCACGCCTCTAATCCAGATCATTGCAGCTGCTATCAACGTCATCGTTCTCCGTGAGCAACTTCACCTTGGAACTGTGATAGGTTCTGCTTTGGTTATCATGGGCCTGTATTTCGTTCTCTGGGGAAAGAGTAAGGAGGCATCACCATCATCATCATCATCTCATCCAGCCAAGGAAGCTGTGCCTGTGCTGCAACAACAACACGGCCATGATGATCAAGAAACCACTAATGTACAGATGCAAACTGTCTAGTAATGTCGTAACAATAATTAACAAGCTATACGCAACGCATGCTCGCCGGTGAAGGACGTCGCACTCGACCGTGGATTAAAAGAAAAAATGAATTCATATGCATCAAGTAGTGAAATTAGTCCTCACGGCAGAAAAAAGATTTCCTGCCCTATATATATATATGCATTTCGACCAATTAGGAAGGAAGTTGGTCAAGATGATTAATTTTGTATGCTTGTAAGTTGTAACGGATCAAGAGAATGATATTTACATATA] consensusID : consensus_199#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1412 fasta sequence [GGCGAAAGCAACATTAGCAAGCACACATATACATTTGCAGATAGGTATAGCTAAGCTCTAGCCAGATAAAAAGAAGATTATGGTCAAGAGATCCTGAATTAATGGGTAGCTGTAATAGTTGGAAGCCAACGTTGACAATGGTTGGGGTGGTGGTGGTGTTCGCGGTGATGAACACCCTCACCAAGATGGCCTTCAACGAGGGGATGCGCTCCACCGTCCTCATCACGCTCCGTCAGCTCATCGCCACTCTCTTCCTCGCCCCAATCGCCTACTTCCGGGAGAGGAAGACAAGACCAAAGCTTACGGCTGAAATCTTGAGCGTCCCTTACCCAATGGCTCTTCTTCTTGGGGCTGCAGTACACCACAGCAACATTCGCTTGCGCCTTCATCAACATGACTCCCATCTTCACTTTCATTGTAGCACTGCCTTATGGGCTGGAGAAAGTGGACCTGAAGACAGGAGCTGGCATAGCAAAAGTGGGAGGCACAGTGTTAGGATTCAGCGGAGCGATGATCCTCGCTCTCTACCAGGGTCCATCGCTCACCAAGCTAGGACCTGCTGCTGCTCGATCATCATCGTCATCATCTTCTTCTTCTGCAACGGCGGCAGTCGTCGGTCATGGCAGCGGCGGCGGCGCGCACAGGTGGGCGATCGGGTCGGTGGCGCTGCTGGGCGGTTCAGCTTGCTGGTCCCTGTGGTTCATCCTGCAGTCGAGGATCGCCAAGAAGTACCCGGCGCTCTACTCGGGCACTGCCCTGATGTTCCTGCTCAGCTTCCTTCAGATGGCTGCAGTCGCGTTGGCCGTCGACAGAATTAGCTTATCCCCATGGATCTTAACAACGAAGCTTCAGATCATCACCGTGCTCTTTGTGGGGATAGTTGGATCAGGAATAGCGTTCTTGGCGATGTCATGGTGCGTGGAGCAGAGAGGGCCTGTGTTCACGACGGCGTTCACGCCCCTCATCCAGATCATCGCAGCTGCTATCAACGTCATCGTTCTCCATGAGCAACTCCATCTTGGAATTGTGATAGGATCTGCTCTGGTAATCATTGGGCTGTATTTCGTACTGTGGGGAAAGAATAAGGAGGCCTCGTCGTCGTCTTCTCCAGCAAAGGAGGCTGTGCCTGCGCTGCGGCAACAATACGGCGGCCATGATCAAGAAACGACTAATGATGTACAAATGCAAACTGTCTAGTACTACTACGTACTGAAACAATAATTAGTAGTAGTAGCTAATTAGCATGCACACCGCGCACTTGATGATCGTGGATAAAGAAAAATGCATCATGAAAAAAGGAGTAAAAAAAATCCGGCCCTGTTTTTTTTCCCTTCCTCCTATAGTATATGCCCGAGTATGCATATCAGGAGGGAAGTTGGTCAAGATGAATTGCTTTTGATAATGAAAATCAT] [+] EMBL AK061416 [GGCGAAAGCAACATTAGCAAGCACACATATACATTTGCAGATAGGTATAGCTAAGCTCTAGCCAGATAAAAAGAAGATTATGGTCAAGAGATCCTGAATTAATGGGTAGCTGTAATAGTTGGAAGCCAACGTTGACAATGGTTGGGGTGGTGGTGGTGTTCGCGGTGATGAACACCCTCACCAAGATGGCCTTCAACGAGGGGATGCGCTCCACCGTCCTCATCACGCTCCGTCAGCTCATCGCCACTCTCTTCCTCGCCCCAATCGCCTACTTCCGGGAGAGGAAGACAAGACCAAAGCTTACGGCTGAAATCTTGAGCGTCCCTTACCCAATGGCTCTTCTTCTTGGGGCTGCAGTACACCACAGCAACATTCGCTTGCGCCTTCATCAACATGACTCCCATCTTCACTTTCATTGTAGCACTGCCTTATGGGCTGGAGAAAGTGGACCTGAAGACAGGAGCTGGCATAGCAAAAGTGGGAGGCACAGTGTTAGGATTCAGCGGAGCGATGATCCTCGCTCTCTACCAGGGTCCATCGCTCACCAAGCTAGGACCTGCTGCTGCTCGATCATCATCGTCATCATCTTCTTCTTCTGCAACGGCGGCAGTCGTCGGTCATGGCAGCGGCGGCGGCGCGCACAGGTGGGCGATCGGGTCGGTGGCGCTGCTGGGCGGTTCAGCTTGCTGGTCCCTGTGGTTCATCCTGCAGTCGAGGATCGCCAAGAAGTACCCGGCGCTCTACTCGGGCACTGCCCTGATGTTCCTGCTCAGCTTCCTTCAGATGGCTGCAGTCGCGTTGGCCGTCGACAGAATTAGCTTATCCCCATGGATCTTAACAACGAAGCTTCAGATCATCACCGTGCTCTTTGTGGGGATAGTTGGATCAGGAATAGCGTTCTTGGCGATGTCATGGTGCGTGGAGCAGAGAGGGCCTGTGTTCACGACGGCGTTCACGCCCCTCATCCAGATCATCGCAGCTGCTATCAACGTCATCGTTCTCCATGAGCAACTCCATCTTGGAATTGTGATAGGATCTGCTCTGGTAATCATTGGGCTGTATTTCGTACTGTGGGGAAAGAATAAGGAGGCCTCGTCGTCGTCTTCTCCAGCAAAGGAGGCTGTGCCTGCGCTGCGGCAACAATACGGCGGCCATGATCAAGAAACGACTAATGATGTACAAATGCAAACTGTCTAGTACTACTACGTACTGAAACAATAATTAGTAGTAGTAGCTAATTAGCATGCACACCGCGCACTTGATGATCGTGGATAAAGAAAAATGCATCATGAAAAAAGGAGTAAAAAAAATCCGGCCCTGTTTTTTTTCCCTTCCTCCTATAGTATATGCCCGAGTATGCATATCAGGAGGGAAGTTGGTCAAGATGAATTGCTTTTGATAATGAAAATCAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_199#0 ------ATATATATATACACACAAACACACATATTT-CAGATTAGCTTTGTAGCTAGCTA 53 consensus_199#1 GGCGAAAGCAACATTAGCAAGCACACATATACATTTGCAGATAGGTATAGCTAAGCTCTA 60 * * ** ** ** *** * * **** ***** * * * *** consensus_199#0 GCCATTGATCAGCTAGATAGAGATCGATCGATCCTGAATCGATATGGGTAGCTGCAATAG 113 consensus_199#1 GCCAGATAAAAAGAAGATTATGGTCAAGAGATCCTGAATTAA--TGGGTAGCTGTAATAG 118 **** * * **** * ** * ********** * ********** ***** consensus_199#0 TTGGAAGCCAACATTGACAATGGTTGGGGTTGTGGTGGTGTTCGCGGTGATGAACACCCT 173 consensus_199#1 TTGGAAGCCAACGTTGACAATGGTTGGGGTGGTGGTGGTGTTCGCGGTGATGAACACCCT 178 ************ ***************** ***************************** consensus_199#0 CATCAAGATGGCCCTGAACGAGGGGATGCACGCCACCGTCCTCATCACGCTTCGTCAGCT 233 consensus_199#1 CACCAAGATGGCCTTCAACGAGGGGATGCGCTCCACCGTCCTCATCACGCTCCGTCAGCT 238 ** ********** * ************* * ******************* ******** consensus_199#0 CATCGCCACCCTCTTCCTCGCCCCGATCGCCTACTTCCGGGAGAGGAAGACAAGACCAAA 293 consensus_199#1 CATCGCCACTCTCTTCCTCGCCCCAATCGCCTACTTCCGGGAGAGGAAGACAAGACCAAA 298 ********* ************** *********************************** consensus_199#0 GCTAACAGCTGAAATCTTGGTGTATCTCTTCTTCAGTGCGGTGCTCGGAGCGTCCCTTAC 353 consensus_199#1 GCTTACGGCTGAAATCTTG-----------------------------AGCGTCCCTTAC 329 *** ** ************ ************ consensus_199#0 CCAGTGGCTCTTCTTCCTGGGGCTGCAGTACACCACCGCAACATTCGCCTGCGCCTTCAT 413 consensus_199#1 CCAATGGCTCTTCTTCTTGGGGCTGCAGTACACCACAGCAACATTCGCTTGCGCCTTCAT 389 *** ************ ******************* *********** *********** consensus_199#0 CAACATGACTCCCATCTTCACCTTCCTTGTAGCTCTGCCTTATGGGCTGGAGAAAGTTAA 473 consensus_199#1 CAACATGACTCCCATCTTCACTTTCATTGTAGCACTGCCTTATGGGCTGGAGAAAGTGGA 449 ********************* *** ******* *********************** * consensus_199#0 CCTGAACATAG---CTGGCATAGCTAAAGTGGGAGGTACGGTGTTAGGATTCAGCGGAGC 530 consensus_199#1 CCTGAAGACAGGAGCTGGCATAGCAAAAGTGGGAGGCACAGTGTTAGGATTCAGCGGAGC 509 ****** * ** ********** *********** ** ******************** consensus_199#0 AATGGTCCTTGCTCTCTACCAGGGCCCATCGCTCACCAAGCTATCATCTTCATCTTCT-- 588 consensus_199#1 GATGATCCTCGCTCTCTACCAGGGTCCATCGCTCACCAAGCTAGGACCTGCTGCTGCTCG 569 *** **** ************** ****************** * ** * ** ** consensus_199#0 -TCATCATCATCTTCTTCCTCTCCGATGGCATCGGCGGCGGTGATCGCCGCCGGTCATGT 647 consensus_199#1 ATCATCATCGTCATCATCTTCTTCTTCTGCAACGGCGGCAGTCGTCGGTCATGGCAGCGG 629 ******** ** ** ** *** * *** ******* ** *** ** * consensus_199#0 CGGCGGCGCGCACAGATGGGCGATCGGGTCGGTGGCGTTGCTGGGTGGGTCGGCCTGCTG 707 consensus_199#1 CGGCGGCGCGCACAGGTGGGCGATCGGGTCGGTGGCGCTGCTGGGCGGTTCAGCTTGCTG 689 *************** ********************* ******* ** ** ** ***** consensus_199#0 GTCGCTGTGGTTCATCCTGCAGTCGAGGATCGCCAGGAAGTACCCGGCTCTCTACTCGGG 767 consensus_199#1 GTCCCTGTGGTTCATCCTGCAGTCGAGGATCGCCAAGAAGTACCCGGCGCTCTACTCGGG 749 *** ******************************* ************ *********** consensus_199#0 GACGGCCCTGATGTTCTTCCTCAGCTTCCTCCAGATGGCCGTGGTCGCCTTGGCCATCGA 827 consensus_199#1 CACTGCCCTGATGTTCCTGCTCAGCTTCCTTCAGATGGCTGCAGTCGCGTTGGCCGTCGA 809 ** ************ * *********** ******** * ***** ****** **** consensus_199#0 CAGGGTTAGCTTGCCCCCATGGATCTTAAGGACCAAGCTTCAGATCATCACCGTGCTCTT 887 consensus_199#1 CAGAATTAGCTTATCCCCATGGATCTTAACAACGAAGCTTCAGATCATCACCGTGCTCTT 869 *** ******* *************** ** ************************** consensus_199#0 TGTGGGGATAGTTGGGTCAGGAATAGGGTTCTTGGCAATGTCATGGTGTGTGGAGCAGAG 947 consensus_199#1 TGTGGGGATAGTTGGATCAGGAATAGCGTTCTTGGCGATGTCATGGTGCGTGGAGCAGAG 929 *************** ********** ********* *********** *********** consensus_199#0 AGGGCCGGTGTTCACGACTGCATTCACGCCTCTAATCCAGATCATTGCAGCTGCTATCAA 1007 consensus_199#1 AGGGCCTGTGTTCACGACGGCGTTCACGCCCCTCATCCAGATCATCGCAGCTGCTATCAA 989 ****** *********** ** ******** ** *********** ************** consensus_199#0 CGTCATCGTTCTCCGTGAGCAACTTCACCTTGGAACTGTGATAGGTTCTGCTTTGGTTAT 1067 consensus_199#1 CGTCATCGTTCTCCATGAGCAACTCCATCTTGGAATTGTGATAGGATCTGCTCTGGTAAT 1049 ************** ********* ** ******* ********* ****** **** ** consensus_199#0 CATGGGCCTGTATTTCGTTCTCTGGGGAAAGAGTAAGGAGGCATCACCATCATCATCATC 1127 consensus_199#1 CATTGGGCTGTATTTCGTACTGTGGGGAAAGAATAAGGAGGC---------CTCGTCGTC 1100 *** ** *********** ** ********** ********* ** ** ** consensus_199#0 ATCTCATCCAGCCAAGGAAGCTGTGCCTGTGCTGCAACAACAACACGGCCATGATGATCA 1187 consensus_199#1 GTCTTCTCCAGCAAAGGAGGCTGTGCCTGCGCTGCGGCAACAATACGGCGGCCATGATCA 1160 *** ****** ***** ********** ***** ****** ***** ******* consensus_199#0 AGAAACCACTAATG---TACAGATGCAAACTGTCTAGTAATGTCGTAACAATAATTAACA 1244 consensus_199#1 AGAAACGACTAATGATGTACAAATGCAAACTGTCTAGTACTACTACGTACTGAAACAATA 1220 ****** ******* **** ***************** * ** ** * consensus_199#0 AGCTATACGCAACGCATGCTCGCCGGTGAAGGACGTCGCACTCGACCGTGGATTAAAAGA 1304 consensus_199#1 ATTAGTA-GTAGTAGCTAATTAGCA-TGCACACCG-CGCACTTGATGATCGTGGATAAAG 1277 * ** * * * * * ** * ** ****** ** * * * ** consensus_199#0 AAAAATGAATTCATATGCATCAAGTAGTGAAATTAGTCCTCACGGCAGAAAAAAGATTTC 1364 consensus_199#1 AAAAATGCATC---ATGAAAAAAGGAGTAAAAAAAATCC----GGCCCTGTTTTTTTTCC 1330 ******* ** *** * *** *** *** * *** *** ** * consensus_199#0 CTGCCCTATATA-TATATATGCATTTCGACCAATTAGGAAGGAAGTTGGTCAAGATGATT 1423 consensus_199#1 CTTCCTCCTATAGTATATGCCCGAGTATGCATATCAGGAGGGAAGTTGGTCAAGATGAAT 1390 ** ** **** ***** * * * ** **** ****************** * consensus_199#0 AATTTTGTATGCTTGTAAGTTGTAACGGATCAAGAGAATGATATTTACATATA 1476 consensus_199#1 TGCTTTTGATAAT-GAAAATCAT------------------------------ 1412 *** ** * * ** * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||