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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_199#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1476 fasta sequence
[ATATATATATACACACAAACACACATATTTCAGATTAGCTTTGTAGCTAGCTAGCCATTGATCAGCTAGATAGAGATCGATCGATCCTGAATCGATATGGGTAGCTGCAATAGTTGGAAGCCAACATTGACAATGGTTGGGGTTGTGGTGGTGTTCGCGGTGATGAACACCCTCATCAAGATGGCCCTGAACGAGGGGATGCACGCCACCGTCCTCATCACGCTTCGTCAGCTCATCGCCACCCTCTTCCTCGCCCCGATCGCCTACTTCCGGGAGAGGAAGACAAGACCAAAGCTAACAGCTGAAATCTTGGTGTATCTCTTCTTCAGTGCGGTGCTCGGAGCGTCCCTTACCCAGTGGCTCTTCTTCCTGGGGCTGCAGTACACCACCGCAACATTCGCCTGCGCCTTCATCAACATGACTCCCATCTTCACCTTCCTTGTAGCTCTGCCTTATGGGCTGGAGAAAGTTAACCTGAACATAGCTGGCATAGCTAAAGTGGGAGGTACGGTGTTAGGATTCAGCGGAGCAATGGTCCTTGCTCTCTACCAGGGCCCATCGCTCACCAAGCTATCATCTTCATCTTCTTCATCATCATCTTCTTCCTCTCCGATGGCATCGGCGGCGGTGATCGCCGCCGGTCATGTCGGCGGCGCGCACAGATGGGCGATCGGGTCGGTGGCGTTGCTGGGTGGGTCGGCCTGCTGGTCGCTGTGGTTCATCCTGCAGTCGAGGATCGCCAGGAAGTACCCGGCTCTCTACTCGGGGACGGCCCTGATGTTCTTCCTCAGCTTCCTCCAGATGGCCGTGGTCGCCTTGGCCATCGACAGGGTTAGCTTGCCCCCATGGATCTTAAGGACCAAGCTTCAGATCATCACCGTGCTCTTTGTGGGGATAGTTGGGTCAGGAATAGGGTTCTTGGCAATGTCATGGTGTGTGGAGCAGAGAGGGCCGGTGTTCACGACTGCATTCACGCCTCTAATCCAGATCATTGCAGCTGCTATCAACGTCATCGTTCTCCGTGAGCAACTTCACCTTGGAACTGTGATAGGTTCTGCTTTGGTTATCATGGGCCTGTATTTCGTTCTCTGGGGAAAGAGTAAGGAGGCATCACCATCATCATCATCATCTCATCCAGCCAAGGAAGCTGTGCCTGTGCTGCAACAACAACACGGCCATGATGATCAAGAAACCACTAATGTACAGATGCAAACTGTCTAGTAATGTCGTAACAATAATTAACAAGCTATACGCAACGCATGCTCGCCGGTGAAGGACGTCGCACTCGACCGTGGATTAAAAGAAAAAATGAATTCATATGCATCAAGTAGTGAAATTAGTCCTCACGGCAGAAAAAAGATTTCCTGCCCTATATATATATATGCATTTCGACCAATTAGGAAGGAAGTTGGTCAAGATGATTAATTTTGTATGCTTGTAAGTTGTAACGGATCAAGAGAATGATATTTACATATA]
[+] EMBL AK107131 [ATATATATATACACACAAACACACATATTTCAGATTAGCTTTGTAGCTAGCTAGCCATTGATCAGCTAGATAGAGATCGATCGATCCTGAATCGATATGGGTAGCTGCAATAGTTGGAAGCCAACATTGACAATGGTTGGGGTTGTGGTGGTGTTCGCGGTGATGAACACCCTCATCAAGATGGCCCTGAACGAGGGGATGCACGCCACCGTCCTCATCACGCTTCGTCAGCTCATCGCCACCCTCTTCCTCGCCCCGATCGCCTACTTCCGGGAGAGGAAGACAAGACCAAAGCTAACAGCTGAAATCTTGGTGTATCTCTTCTTCAGTGCGGTGCTCGGAGCGTCCCTTACCCAGTGGCTCTTCTTCCTGGGGCTGCAGTACACCACCGCAACATTCGCCTGCGCCTTCATCAACATGACTCCCATCTTCACCTTCCTTGTAGCTCTGCCTTATGGGCTGGAGAAAGTTAACCTGAACATAGCTGGCATAGCTAAAGTGGGAGGTACGGTGTTAGGATTCAGCGGAGCAATGGTCCTTGCTCTCTACCAGGGCCCATCGCTCACCAAGCTATCATCTTCATCTTCTTCATCATCATCTTCTTCCTCTCCGATGGCATCGGCGGCGGTGATCGCCGCCGGTCATGTCGGCGGCGCGCACAGATGGGCGATCGGGTCGGTGGCGTTGCTGGGTGGGTCGGCCTGCTGGTCGCTGTGGTTCATCCTGCAGTCGAGGATCGCCAGGAAGTACCCGGCTCTCTACTCGGGGACGGCCCTGATGTTCTTCCTCAGCTTCCTCCAGATGGCCGTGGTCGCCTTGGCCATCGACAGGGTTAGCTTGCCCCCATGGATCTTAAGGACCAAGCTTCAGATCATCACCGTGCTCTTTGTGGGGATAGTTGGGTCAGGAATAGGGTTCTTGGCAATGTCATGGTGTGTGGAGCAGAGAGGGCCGGTGTTCACGACTGCATTCACGCCTCTAATCCAGATCATTGCAGCTGCTATCAACGTCATCGTTCTCCGTGAGCAACTTCACCTTGGAACTGTGATAGGTTCTGCTTTGGTTATCATGGGCCTGTATTTCGTTCTCTGGGGAAAGAGTAAGGAGGCATCACCATCATCATCATCATCTCATCCAGCCAAGGAAGCTGTGCCTGTGCTGCAACAACAACACGGCCATGATGATCAAGAAACCACTAATGTACAGATGCAAACTGTCTAGTAATGTCGTAACAATAATTAACAAGCTATACGCAACGCATGCTCGCCGGTGAAGGACGTCGCACTCGACCGTGGATTAAAAGAAAAAATGAATTCATATGCATCAAGTAGTGAAATTAGTCCTCACGGCAGAAAAAAGATTTCCTGCCCTATATATATATATGCATTTCGACCAATTAGGAAGGAAGTTGGTCAAGATGATTAATTTTGTATGCTTGTAAGTTGTAACGGATCAAGAGAATGATATTTACATATA]
consensusID : consensus_199#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1412 fasta sequence
[GGCGAAAGCAACATTAGCAAGCACACATATACATTTGCAGATAGGTATAGCTAAGCTCTAGCCAGATAAAAAGAAGATTATGGTCAAGAGATCCTGAATTAATGGGTAGCTGTAATAGTTGGAAGCCAACGTTGACAATGGTTGGGGTGGTGGTGGTGTTCGCGGTGATGAACACCCTCACCAAGATGGCCTTCAACGAGGGGATGCGCTCCACCGTCCTCATCACGCTCCGTCAGCTCATCGCCACTCTCTTCCTCGCCCCAATCGCCTACTTCCGGGAGAGGAAGACAAGACCAAAGCTTACGGCTGAAATCTTGAGCGTCCCTTACCCAATGGCTCTTCTTCTTGGGGCTGCAGTACACCACAGCAACATTCGCTTGCGCCTTCATCAACATGACTCCCATCTTCACTTTCATTGTAGCACTGCCTTATGGGCTGGAGAAAGTGGACCTGAAGACAGGAGCTGGCATAGCAAAAGTGGGAGGCACAGTGTTAGGATTCAGCGGAGCGATGATCCTCGCTCTCTACCAGGGTCCATCGCTCACCAAGCTAGGACCTGCTGCTGCTCGATCATCATCGTCATCATCTTCTTCTTCTGCAACGGCGGCAGTCGTCGGTCATGGCAGCGGCGGCGGCGCGCACAGGTGGGCGATCGGGTCGGTGGCGCTGCTGGGCGGTTCAGCTTGCTGGTCCCTGTGGTTCATCCTGCAGTCGAGGATCGCCAAGAAGTACCCGGCGCTCTACTCGGGCACTGCCCTGATGTTCCTGCTCAGCTTCCTTCAGATGGCTGCAGTCGCGTTGGCCGTCGACAGAATTAGCTTATCCCCATGGATCTTAACAACGAAGCTTCAGATCATCACCGTGCTCTTTGTGGGGATAGTTGGATCAGGAATAGCGTTCTTGGCGATGTCATGGTGCGTGGAGCAGAGAGGGCCTGTGTTCACGACGGCGTTCACGCCCCTCATCCAGATCATCGCAGCTGCTATCAACGTCATCGTTCTCCATGAGCAACTCCATCTTGGAATTGTGATAGGATCTGCTCTGGTAATCATTGGGCTGTATTTCGTACTGTGGGGAAAGAATAAGGAGGCCTCGTCGTCGTCTTCTCCAGCAAAGGAGGCTGTGCCTGCGCTGCGGCAACAATACGGCGGCCATGATCAAGAAACGACTAATGATGTACAAATGCAAACTGTCTAGTACTACTACGTACTGAAACAATAATTAGTAGTAGTAGCTAATTAGCATGCACACCGCGCACTTGATGATCGTGGATAAAGAAAAATGCATCATGAAAAAAGGAGTAAAAAAAATCCGGCCCTGTTTTTTTTCCCTTCCTCCTATAGTATATGCCCGAGTATGCATATCAGGAGGGAAGTTGGTCAAGATGAATTGCTTTTGATAATGAAAATCAT]
[+] EMBL AK061416 [GGCGAAAGCAACATTAGCAAGCACACATATACATTTGCAGATAGGTATAGCTAAGCTCTAGCCAGATAAAAAGAAGATTATGGTCAAGAGATCCTGAATTAATGGGTAGCTGTAATAGTTGGAAGCCAACGTTGACAATGGTTGGGGTGGTGGTGGTGTTCGCGGTGATGAACACCCTCACCAAGATGGCCTTCAACGAGGGGATGCGCTCCACCGTCCTCATCACGCTCCGTCAGCTCATCGCCACTCTCTTCCTCGCCCCAATCGCCTACTTCCGGGAGAGGAAGACAAGACCAAAGCTTACGGCTGAAATCTTGAGCGTCCCTTACCCAATGGCTCTTCTTCTTGGGGCTGCAGTACACCACAGCAACATTCGCTTGCGCCTTCATCAACATGACTCCCATCTTCACTTTCATTGTAGCACTGCCTTATGGGCTGGAGAAAGTGGACCTGAAGACAGGAGCTGGCATAGCAAAAGTGGGAGGCACAGTGTTAGGATTCAGCGGAGCGATGATCCTCGCTCTCTACCAGGGTCCATCGCTCACCAAGCTAGGACCTGCTGCTGCTCGATCATCATCGTCATCATCTTCTTCTTCTGCAACGGCGGCAGTCGTCGGTCATGGCAGCGGCGGCGGCGCGCACAGGTGGGCGATCGGGTCGGTGGCGCTGCTGGGCGGTTCAGCTTGCTGGTCCCTGTGGTTCATCCTGCAGTCGAGGATCGCCAAGAAGTACCCGGCGCTCTACTCGGGCACTGCCCTGATGTTCCTGCTCAGCTTCCTTCAGATGGCTGCAGTCGCGTTGGCCGTCGACAGAATTAGCTTATCCCCATGGATCTTAACAACGAAGCTTCAGATCATCACCGTGCTCTTTGTGGGGATAGTTGGATCAGGAATAGCGTTCTTGGCGATGTCATGGTGCGTGGAGCAGAGAGGGCCTGTGTTCACGACGGCGTTCACGCCCCTCATCCAGATCATCGCAGCTGCTATCAACGTCATCGTTCTCCATGAGCAACTCCATCTTGGAATTGTGATAGGATCTGCTCTGGTAATCATTGGGCTGTATTTCGTACTGTGGGGAAAGAATAAGGAGGCCTCGTCGTCGTCTTCTCCAGCAAAGGAGGCTGTGCCTGCGCTGCGGCAACAATACGGCGGCCATGATCAAGAAACGACTAATGATGTACAAATGCAAACTGTCTAGTACTACTACGTACTGAAACAATAATTAGTAGTAGTAGCTAATTAGCATGCACACCGCGCACTTGATGATCGTGGATAAAGAAAAATGCATCATGAAAAAAGGAGTAAAAAAAATCCGGCCCTGTTTTTTTTCCCTTCCTCCTATAGTATATGCCCGAGTATGCATATCAGGAGGGAAGTTGGTCAAGATGAATTGCTTTTGATAATGAAAATCAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_199#0 ------ATATATATATACACACAAACACACATATTT-CAGATTAGCTTTGTAGCTAGCTA 53
consensus_199#1 GGCGAAAGCAACATTAGCAAGCACACATATACATTTGCAGATAGGTATAGCTAAGCTCTA 60
* * ** ** ** *** * * **** ***** * * * ***
consensus_199#0 GCCATTGATCAGCTAGATAGAGATCGATCGATCCTGAATCGATATGGGTAGCTGCAATAG 113
consensus_199#1 GCCAGATAAAAAGAAGATTATGGTCAAGAGATCCTGAATTAA--TGGGTAGCTGTAATAG 118
**** * * **** * ** * ********** * ********** *****
consensus_199#0 TTGGAAGCCAACATTGACAATGGTTGGGGTTGTGGTGGTGTTCGCGGTGATGAACACCCT 173
consensus_199#1 TTGGAAGCCAACGTTGACAATGGTTGGGGTGGTGGTGGTGTTCGCGGTGATGAACACCCT 178
************ ***************** *****************************
consensus_199#0 CATCAAGATGGCCCTGAACGAGGGGATGCACGCCACCGTCCTCATCACGCTTCGTCAGCT 233
consensus_199#1 CACCAAGATGGCCTTCAACGAGGGGATGCGCTCCACCGTCCTCATCACGCTCCGTCAGCT 238
** ********** * ************* * ******************* ********
consensus_199#0 CATCGCCACCCTCTTCCTCGCCCCGATCGCCTACTTCCGGGAGAGGAAGACAAGACCAAA 293
consensus_199#1 CATCGCCACTCTCTTCCTCGCCCCAATCGCCTACTTCCGGGAGAGGAAGACAAGACCAAA 298
********* ************** ***********************************
consensus_199#0 GCTAACAGCTGAAATCTTGGTGTATCTCTTCTTCAGTGCGGTGCTCGGAGCGTCCCTTAC 353
consensus_199#1 GCTTACGGCTGAAATCTTG-----------------------------AGCGTCCCTTAC 329
*** ** ************ ************
consensus_199#0 CCAGTGGCTCTTCTTCCTGGGGCTGCAGTACACCACCGCAACATTCGCCTGCGCCTTCAT 413
consensus_199#1 CCAATGGCTCTTCTTCTTGGGGCTGCAGTACACCACAGCAACATTCGCTTGCGCCTTCAT 389
*** ************ ******************* *********** ***********
consensus_199#0 CAACATGACTCCCATCTTCACCTTCCTTGTAGCTCTGCCTTATGGGCTGGAGAAAGTTAA 473
consensus_199#1 CAACATGACTCCCATCTTCACTTTCATTGTAGCACTGCCTTATGGGCTGGAGAAAGTGGA 449
********************* *** ******* *********************** *
consensus_199#0 CCTGAACATAG---CTGGCATAGCTAAAGTGGGAGGTACGGTGTTAGGATTCAGCGGAGC 530
consensus_199#1 CCTGAAGACAGGAGCTGGCATAGCAAAAGTGGGAGGCACAGTGTTAGGATTCAGCGGAGC 509
****** * ** ********** *********** ** ********************
consensus_199#0 AATGGTCCTTGCTCTCTACCAGGGCCCATCGCTCACCAAGCTATCATCTTCATCTTCT-- 588
consensus_199#1 GATGATCCTCGCTCTCTACCAGGGTCCATCGCTCACCAAGCTAGGACCTGCTGCTGCTCG 569
*** **** ************** ****************** * ** * ** **
consensus_199#0 -TCATCATCATCTTCTTCCTCTCCGATGGCATCGGCGGCGGTGATCGCCGCCGGTCATGT 647
consensus_199#1 ATCATCATCGTCATCATCTTCTTCTTCTGCAACGGCGGCAGTCGTCGGTCATGGCAGCGG 629
******** ** ** ** *** * *** ******* ** *** ** *
consensus_199#0 CGGCGGCGCGCACAGATGGGCGATCGGGTCGGTGGCGTTGCTGGGTGGGTCGGCCTGCTG 707
consensus_199#1 CGGCGGCGCGCACAGGTGGGCGATCGGGTCGGTGGCGCTGCTGGGCGGTTCAGCTTGCTG 689
*************** ********************* ******* ** ** ** *****
consensus_199#0 GTCGCTGTGGTTCATCCTGCAGTCGAGGATCGCCAGGAAGTACCCGGCTCTCTACTCGGG 767
consensus_199#1 GTCCCTGTGGTTCATCCTGCAGTCGAGGATCGCCAAGAAGTACCCGGCGCTCTACTCGGG 749
*** ******************************* ************ ***********
consensus_199#0 GACGGCCCTGATGTTCTTCCTCAGCTTCCTCCAGATGGCCGTGGTCGCCTTGGCCATCGA 827
consensus_199#1 CACTGCCCTGATGTTCCTGCTCAGCTTCCTTCAGATGGCTGCAGTCGCGTTGGCCGTCGA 809
** ************ * *********** ******** * ***** ****** ****
consensus_199#0 CAGGGTTAGCTTGCCCCCATGGATCTTAAGGACCAAGCTTCAGATCATCACCGTGCTCTT 887
consensus_199#1 CAGAATTAGCTTATCCCCATGGATCTTAACAACGAAGCTTCAGATCATCACCGTGCTCTT 869
*** ******* *************** ** **************************
consensus_199#0 TGTGGGGATAGTTGGGTCAGGAATAGGGTTCTTGGCAATGTCATGGTGTGTGGAGCAGAG 947
consensus_199#1 TGTGGGGATAGTTGGATCAGGAATAGCGTTCTTGGCGATGTCATGGTGCGTGGAGCAGAG 929
*************** ********** ********* *********** ***********
consensus_199#0 AGGGCCGGTGTTCACGACTGCATTCACGCCTCTAATCCAGATCATTGCAGCTGCTATCAA 1007
consensus_199#1 AGGGCCTGTGTTCACGACGGCGTTCACGCCCCTCATCCAGATCATCGCAGCTGCTATCAA 989
****** *********** ** ******** ** *********** **************
consensus_199#0 CGTCATCGTTCTCCGTGAGCAACTTCACCTTGGAACTGTGATAGGTTCTGCTTTGGTTAT 1067
consensus_199#1 CGTCATCGTTCTCCATGAGCAACTCCATCTTGGAATTGTGATAGGATCTGCTCTGGTAAT 1049
************** ********* ** ******* ********* ****** **** **
consensus_199#0 CATGGGCCTGTATTTCGTTCTCTGGGGAAAGAGTAAGGAGGCATCACCATCATCATCATC 1127
consensus_199#1 CATTGGGCTGTATTTCGTACTGTGGGGAAAGAATAAGGAGGC---------CTCGTCGTC 1100
*** ** *********** ** ********** ********* ** ** **
consensus_199#0 ATCTCATCCAGCCAAGGAAGCTGTGCCTGTGCTGCAACAACAACACGGCCATGATGATCA 1187
consensus_199#1 GTCTTCTCCAGCAAAGGAGGCTGTGCCTGCGCTGCGGCAACAATACGGCGGCCATGATCA 1160
*** ****** ***** ********** ***** ****** ***** *******
consensus_199#0 AGAAACCACTAATG---TACAGATGCAAACTGTCTAGTAATGTCGTAACAATAATTAACA 1244
consensus_199#1 AGAAACGACTAATGATGTACAAATGCAAACTGTCTAGTACTACTACGTACTGAAACAATA 1220
****** ******* **** ***************** * ** ** *
consensus_199#0 AGCTATACGCAACGCATGCTCGCCGGTGAAGGACGTCGCACTCGACCGTGGATTAAAAGA 1304
consensus_199#1 ATTAGTA-GTAGTAGCTAATTAGCA-TGCACACCG-CGCACTTGATGATCGTGGATAAAG 1277
* ** * * * * * ** * ** ****** ** * * * **
consensus_199#0 AAAAATGAATTCATATGCATCAAGTAGTGAAATTAGTCCTCACGGCAGAAAAAAGATTTC 1364
consensus_199#1 AAAAATGCATC---ATGAAAAAAGGAGTAAAAAAAATCC----GGCCCTGTTTTTTTTCC 1330
******* ** *** * *** *** *** * *** *** ** *
consensus_199#0 CTGCCCTATATA-TATATATGCATTTCGACCAATTAGGAAGGAAGTTGGTCAAGATGATT 1423
consensus_199#1 CTTCCTCCTATAGTATATGCCCGAGTATGCATATCAGGAGGGAAGTTGGTCAAGATGAAT 1390
** ** **** ***** * * * ** **** ****************** *
consensus_199#0 AATTTTGTATGCTTGTAAGTTGTAACGGATCAAGAGAATGATATTTACATATA 1476
consensus_199#1 TGCTTTTGATAAT-GAAAATCAT------------------------------ 1412
*** ** * * ** * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||